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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCGAATCACCTTTAGCAACTGAAATGCTCCTGCAGTGTTGATCAATGGCAAGGAAATAGCCTTCCTCGAACAGAAAAAAAGGAATTTTCCTTTAAATTACCAAAGTGATTGTTTGAGCATAACTTGCCAAGAAGTCCCGTTATACCGGTTTGGAGCTTCTTTTTGTGATTTGTTGTTTTTATCATTGCCTGCCTCTTCGATTCAGTGAAAGGCGTCGCTGGTTAAATTTTCTACAGATTGAAAGCCATCTGGTCTCCGAGCGAAGAATGAACCGTGTGGAGTTCTTATTTGCTATGCTTTCTGCACCGTGTAGCATTATTACCTCGTTCTGAAAGCAAGTGAATTGTTTGTCCAAGTGTGTGGCTGCATTGGGGCACAATTGCCAGCTCATCATATTGAAAAGGGGTGCAGCTCGGAGATGAGGAGAAACGTACGTACGCTGATAAAGTACTTGTTTGTATCAGGAGGAGCGTTGTTGTTTATTACATTGCTAATCCGTTCATTTAGCGACAATGCTAAACATACTCTGGATGGGGTGTTTGGGCCGGAAGCACAAATGCAGAAGGAATCACACGCAAGAGAAGGATCCTTCTTCAACAATCCATCTAAGAATGTGCATCAGAAGCGGATCGATTGGCATAACTATGATCTCATCCATGAAGAAGCCAAGCGGA]
[+] EMBL BM579742 [CCGAATCACCTTTAGCAACTGAAATGCTCCTGCAGTGTTGATCAATGGCAAGGAAATAGCCTTCCTCGAACAGAAAAAAAGGAATTTTCCTTTAAATTACCAAAGTGATTGTTTGAGCATAACTTGCCAAGAAGTCCCGTTATACCGGTTTGGAGCTTCTTTTTGTGATTTGTTGTTTTTATCATTGCCTGCCTCTTCGATTCAGTGAAAGGCGTCGCTGGTTAAATTTTCTACAGATTGAAAGCCATCTGGTCTCCGAGCGAAGAATGAACCGTGTGGAGTTCTTATTTGCTATGCTTTCTGCACCGTGTAGCATTATTACCTCGTTCTGAAAGCAAGTGAATTGTTTGTCCAAGTGTGTGGCTGCATTGGGGCACAATTGCCAGCTCATCATATTGAAAAGGGGTGCAGCTCGGAGATGAGGAGAAACGTACGTACGCTGATAAAGTACTTGTTTGTATCAGGAGGAGCGTTGTTGTTTATTACATTGCTAATCCGTTCATTTAGCGACAATGCTAAACATACTCTGGATGGGGTGTTTGGGCCGGAAGCACAAATGCAGAAGGAATCACACGCAAGAGAAGGATCCTTCTTCAACAATCCATCTAAGAATGTGCATCAGAAGCGGATCGATTGGCATAACTATGATCTCATCCATGAAGAAGCCAAGCGGA]
consensusID : consensus_638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CCGCCCACGCGTCCGAATTTTCTACAGATTGAAAGCCATCTGGTCTCCGAGCGAAGAATGAACCGTGTGGAGTTCTTATTTGCTATGCTTTCTGCACCGTGTAGCATTATTACCTCGTTCTGAAAGCAAGTGAATTGTTTGTCCAAGTGTGTGGCTGCATTGGGGCACAATTGCCAGCTCATCATATTGAAAAGGGGTGCAGCTCGGAGATGAGGAGAAACGTACGTACGCTGATAAAGTACTTGTTTGTATCAGGAGGAGCGTTGTTGTTTATTACATTGCTAATCCGTTCATTTAGCGACAATGCTAAACATACTCTGGATGGGGTGTTTGGGCCGGAAGCACAAATGCAGAAGGAATCACACGCAAGAGAAGGATCCTTCTTCAACAATCCATCTAAGAATGTGCATCAGAAGCGGATCGATTGGCATAACTATGATCTCATCCATGAAGAAGCCAAGCGGAGCGGTATCGGGGAACATGGAAAAGCAGGCCAGCTTGATAAAAGCGAACATGAGATGAAGGATAAACTATTCAAAAAGAATGGATTCAATGCAGTATTAAGCGATAAAATTTCTCTTAATAGATCGCTTCCCGATATAC]
[+] EMBL BM613800 [CCGCCCACGCGTCCGAATTTTCTACAGATTGAAAGCCATCTGGTCTCCGAGCGAAGAATGAACCGTGTGGAGTTCTTATTTGCTATGCTTTCTGCACCGTGTAGCATTATTACCTCGTTCTGAAAGCAAGTGAATTGTTTGTCCAAGTGTGTGGCTGCATTGGGGCACAATTGCCAGCTCATCATATTGAAAAGGGGTGCAGCTCGGAGATGAGGAGAAACGTACGTACGCTGATAAAGTACTTGTTTGTATCAGGAGGAGCGTTGTTGTTTATTACATTGCTAATCCGTTCATTTAGCGACAATGCTAAACATACTCTGGATGGGGTGTTTGGGCCGGAAGCACAAATGCAGAAGGAATCACACGCAAGAGAAGGATCCTTCTTCAACAATCCATCTAAGAATGTGCATCAGAAGCGGATCGATTGGCATAACTATGATCTCATCCATGAAGAAGCCAAGCGGAGCGGTATCGGGGAACATGGAAAAGCAGGCCAGCTTGATAAAAGCGAACATGAGATGAAGGATAAACTATTCAAAAAGAATGGATTCAATGCAGTATTAAGCGATAAAATTTCTCTTAATAGATCGCTTCCCGATATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_638#0 CCGAATCACCTTTAGCAACTGAAATGCTCCTGCAGTGTTGATCAATGGCAAGGAAATAGC 60
consensus_638#1 ------------------------------------------------------------
consensus_638#0 CTTCCTCGAACAGAAAAAAAGGAATTTTCCTTTAAATTACCAAAGTGATTGTTTGAGCAT 120
consensus_638#1 ------------------------------------------------------------
consensus_638#0 AACTTGCCAAGAAGTCCCGTTATACCGGTTTGGAGCTTCTTTTTGTGATTTGTTGTTTTT 180
consensus_638#1 ------------------------------------------------------------
consensus_638#0 ATCATTGCCTGCCTCTTCGATTCAGTGAAAGGCGTCGCTGGTTAAATTTTCTACAGATTG 240
consensus_638#1 ----------------------------CCGCCCACGC-GTCCGAATTTTCTACAGATTG 31
* * *** * ****************
consensus_638#0 AAAGCCATCTGGTCTCCGAGCGAAGAATGAACCGTGTGGAGTTCTTATTTGCTATGCTTT 300
consensus_638#1 AAAGCCATCTGGTCTCCGAGCGAAGAATGAACCGTGTGGAGTTCTTATTTGCTATGCTTT 91
************************************************************
consensus_638#0 CTGCACCGTGTAGCATTATTACCTCGTTCTGAAAGCAAGTGAATTGTTTGTCCAAGTGTG 360
consensus_638#1 CTGCACCGTGTAGCATTATTACCTCGTTCTGAAAGCAAGTGAATTGTTTGTCCAAGTGTG 151
************************************************************
consensus_638#0 TGGCTGCATTGGGGCACAATTGCCAGCTCATCATATTGAAAAGGGGTGCAGCTCGGAGAT 420
consensus_638#1 TGGCTGCATTGGGGCACAATTGCCAGCTCATCATATTGAAAAGGGGTGCAGCTCGGAGAT 211
************************************************************
consensus_638#0 GAGGAGAAACGTACGTACGCTGATAAAGTACTTGTTTGTATCAGGAGGAGCGTTGTTGTT 480
consensus_638#1 GAGGAGAAACGTACGTACGCTGATAAAGTACTTGTTTGTATCAGGAGGAGCGTTGTTGTT 271
************************************************************
consensus_638#0 TATTACATTGCTAATCCGTTCATTTAGCGACAATGCTAAACATACTCTGGATGGGGTGTT 540
consensus_638#1 TATTACATTGCTAATCCGTTCATTTAGCGACAATGCTAAACATACTCTGGATGGGGTGTT 331
************************************************************
consensus_638#0 TGGGCCGGAAGCACAAATGCAGAAGGAATCACACGCAAGAGAAGGATCCTTCTTCAACAA 600
consensus_638#1 TGGGCCGGAAGCACAAATGCAGAAGGAATCACACGCAAGAGAAGGATCCTTCTTCAACAA 391
************************************************************
consensus_638#0 TCCATCTAAGAATGTGCATCAGAAGCGGATCGATTGGCATAACTATGATCTCATCCATGA 660
consensus_638#1 TCCATCTAAGAATGTGCATCAGAAGCGGATCGATTGGCATAACTATGATCTCATCCATGA 451
************************************************************
consensus_638#0 AGAAGCCAAGCGGA---------------------------------------------- 674
consensus_638#1 AGAAGCCAAGCGGAGCGGTATCGGGGAACATGGAAAAGCAGGCCAGCTTGATAAAAGCGA 511
**************
consensus_638#0 ------------------------------------------------------------
consensus_638#1 ACATGAGATGAAGGATAAACTATTCAAAAAGAATGGATTCAATGCAGTATTAAGCGATAA 571
consensus_638#0 --------------------------------
consensus_638#1 AATTTCTCTTAATAGATCGCTTCCCGATATAC 603
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||