cluster # 6386

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Anopheles gambiae
cluster # 6386 cluster # 6386 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6386#0 length = 707 sequences # 2

consensus_6386#1 length = 653 sequences # 3

consensusID : consensus_6386#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 707
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGAGAAGGGACACCACCACCAATAGCGGGGCTACAGCTACTACGTCCCTCCCTCCCCCCTGCAGAACCGGTGTTCCGATTGCGCGCTGTGATGTGCCCCCGCTTCGCTCCAGTGACGAACGTGAAACATCCGGTTGGAACCGTCATCTTCCCGTCGCATTAGGATCGCACCCGAGTGGCGCCTCACCTCACCGTGTGCCGCCGCCGTGCATCCGTTGACTGCCGTAGTTAACGCTCCCACGTTCCCCAGTGCCCCCTTCGCCGTCCCCGGTCGAGAATCCTCCCGGGCGCCGGTTGTGGCTTGGGATGCCGTGGCGAGAAGAAGACACCTAGCTGTTACTGCCCCGTGATAGAGCGAGACGTGTGTGTGTGTTGGTGTGTGAAGAACGAGTTTTGGAGCCGCGAGAGTCGAGGCCAACGCGCAGAAATTAGCCCCCAACTGCATTCTCTCGGTGACTCATTCCCCGCTCATCCCGCCGGTTGCTGCTCAAGATGGATGGATGGTACACGACCATTTGCTCCTGTGAAAAGGGAAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCTACTACTACTACTACGACGTACCTTCCTCGTCATCGTGCAACGGGCTGTGGATGTGTGCGTGTATTAGAGCGATGGAACCGTCATTGTTCCTCCCGCACACCCCTTCTACA]

[+] EMBL BM592066             [CCGCCCACGCGTCCGCCCACGCGTCCGGGAGAAGGGACACCACCACCAATAGCGGGGCTACAGCTACTACGTCCCTCCCTCCCCCCTGCAGAACCGGTGTTCCGATTGCGCGCTGTGATGTGCCCCCGCTTCGCTCCAGTGACGAACGTGAAACATCCGGTTGGAACCGTCATCTTCCCGTCGCATTAGGATCGCACCCGAGTGGCGCCTCACCTCACCGTGTGCCGCCGCCGTGCATCCGTTGACTGCCGTAGTTAACGCTCCCACGTTCCCCAGTGCCCCCTTCGCCGTCCCCGGTCGAGAATCCTCCCGGGCGCCGGTTGTGGCTTGGGATGCCGTGGCGAGAAGAAGACACCTAGCTGTTACTGCCCCGTGATAGAGCGAGACGTGTGTGTGTGTTGGTGTGTGAAGAACGAGTTTTGGAGCCGCGAGAGTCGAGGCCAACGCGCAGAAATTAGCCCCCAACTGCATTCTCTCGGTGACTCATTCCCCGCTCATCCCGCCGGTTGCTGCTCAAGATGGATGGATGGTACACGACCATTTGCTCCTGTGAAAAGGGAAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCTACTACTACTACTACGACGTACCTTCCTCGTCATCGTGCAACGGGCTGTGGATGTGTGCGTGTATTAGAGCGATGGAACCGTCATTGTTCCTCCCG               ]
[+] EMBL BM644487             [            CCGCCCACGCGTCCG     AGGGACACCACCACCAATAGCGGGGCTACAGCTACTACGTCCCTCCCTCCCCCCTGCAGAACCGGTGTTCCGATTGCGCGCTGTGATGTGCCCCCGCTTCGCTCCAGTGACGAACGTGAAACATCCGGTTGGAACCGTCATCTTCCCGTCGCATTAGGATCGCACCCGAGTGGCGCCTCACCTCACCGTGTGCCGCCGCCGTGCATCCGTTGACTGCCGTAGTTAACGCTCCCACGTTCCCCAGTGCCCCCTTCGCCGTCCCCGGTCGAGAATCCTCCCGGGCGCCGGTTGTGGCTTGGGATGCCGTGGCGAGAAGAAGACACCTAGCTGTTACTGCCCCGTGATAGAGCGAGACGTGTGTGTGTGTTGGTGTGTGAAGAACGAGTTTTGGAGCCGCGAGAGTCGAGGCCAACGCGCAGAAATTAGCCCCCAACTGCATTCTCTCGGTGACTCATTCCCCGCTCATCCCGCCGGTTGCTGCTCAAGATGGATGGATGGTACACGACCATTTGCTCCTGTGAAAAGGGAAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCTACTACTACTACTACGACGTACCTTCCTCGTCATCGTGCAACGGGCTGTGGATGTGTGCGTGTATTAGAGCGATGGAACCGTCATTGTTCCTCCCGCACACCCCTTCTACA]




>consensus_6386#0
CCGCCCACGCGTCCGCCCACGCGTCCGGGAGAAGGGACACCACCACCAATAGCGGGGCTA
CAGCTACTACGTCCCTCCCTCCCCCCTGCAGAACCGGTGTTCCGATTGCGCGCTGTGATG
TGCCCCCGCTTCGCTCCAGTGACGAACGTGAAACATCCGGTTGGAACCGTCATCTTCCCG
TCGCATTAGGATCGCACCCGAGTGGCGCCTCACCTCACCGTGTGCCGCCGCCGTGCATCC
GTTGACTGCCGTAGTTAACGCTCCCACGTTCCCCAGTGCCCCCTTCGCCGTCCCCGGTCG
AGAATCCTCCCGGGCGCCGGTTGTGGCTTGGGATGCCGTGGCGAGAAGAAGACACCTAGC
TGTTACTGCCCCGTGATAGAGCGAGACGTGTGTGTGTGTTGGTGTGTGAAGAACGAGTTT
TGGAGCCGCGAGAGTCGAGGCCAACGCGCAGAAATTAGCCCCCAACTGCATTCTCTCGGT
GACTCATTCCCCGCTCATCCCGCCGGTTGCTGCTCAAGATGGATGGATGGTACACGACCA
TTTGCTCCTGTGAAAAGGGAAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCTACT
ACTACTACTACGACGTACCTTCCTCGTCATCGTGCAACGGGCTGTGGATGTGTGCGTGTA
TTAGAGCGATGGAACCGTCATTGTTCCTCCCGCACACCCCTTCTACA

consensusID : consensus_6386#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 653
fasta sequence

                              [CCGGTTACGACAGTGGCGACCTCCTTTTCATTTCCGCCATCGACGGACACGTACTTGTGAAGCACGCGAATACGCCGAATAAAGCCCAAAACGCGTGATTTTTTCTCACAATTGTCCTGCAACAGCATTAAAATGGCCGGTACTCTGTACACTTACCCGGAAAACTTTCGTGCCTACAAAGTGCTGATCGCGGCCCAATACTCCGGCACGCCGGTGAAGGTTGCCGCCGACTTCGTGTTCGGCGAAACCAACTGCAGCGAGCCCTTCCTGCAGAAGTTCCCGAGCGGCAAGGTGCCGGCGTACGAGACTAAGGATGGCAAGTACCTGACGGAGAGCAACGCGATCGCCTACTACGTGGCCAATGAGCAGCTGCGCGGTGCGAACGACTTCCACCGGGCCGAGGTGCAGTCCTTCCTCAGCTTCGCCGACAATGTGCTGCTGCCTGCTGTCCAGGGCTGGACGTTCCCGATGATTGGCATCGTGCCGTACAACAAGAACAACGTTGAGCGTGCGAAGGAGGAGCTGCGTCGCGGCCTGGCCGCCCTCAACAGCCGCCTGCTGAAGCAGACGTACCTGGTCGGCGAGCGGATCACGCTGGCCGATGTGGTCGTGTTTGCCAC-GCTGCTGCCGAGAAGAAGGAGGAGAAGAAGGAA]

[+] EMBL BM657304             [CCGGTTACGACAGTGGCGACCTCCTTTTCATTTCCGCCATCGACGGACACGTACTTGTGAAGCACGCGAATACGCCGAATAAAGCCCAAAACGCGTGATTTTTTCTCACAATTGTCCTGCAACAGCATTAAAATGGCCGGTACTCTGTACACTTACCCGGAAAACTTTCGTGCCTACAAAGTGCTGATCGCGGCCCAATACTCCGGCACGCCGGTGAAGGTTGCCGCCGACTTCGTGTTCGGCGAAACCAACTGCAGCGAGCCCTTCCTGCAGAAGTTCCCGAGCGGCAAGGTGCCGGCGTACGAGACTAAGGATGGCAAGTACCTGACGGAGAGCAACGCGATCGCCTACTACGTGGCCAATGAGCAGCTGCGCGGTGCGAACGACTTCCACCGGGCCGAGGTGCAGTCCTTCCTCAGCTTCGCCGACAATGTGCTGCTGCCTGCTGTCCAGGGCTGGACGTTCCCGATGATTGGCATCGTGCCGTACAACAAGAACAACGTTGAGCGTGCGAAGGAGGAGCTGCGTCGCGGCCTGGCCGCCCTCAACAGCCGCCTGCTGAAGCAGACGTACCTGGTCGGCGAGCGGATCACGCTGGCCGATGTGGTCGTGTTT                                       ]
[+] EMBL BM619788             [         ccgGTGGCGACCTCCTTTTCATTTCCGCCATCGACGGACACGTACTTGTGAAGCACGCGAATACGCCGAATAAAGCCCAAAACGCGTGATTTTTTCTCACAATTGTCCTGCAACAGCATTAAAATGGCCGGTACTCTGTACACTTACCCGGAAAACTTTCGTGCCTACAAAGTGCTGATCGCGGCCCAATACTCCGGCACGCCGGTGAAGGTTGCCGCCGACTTCGTGTTCGGCGAAACCAACTGCAGCGAGCCCTTCCTGCAGAAGTTCCCGAGCGGCAAGGTGCCGGCGTACGAGACTAAGGATGGCAAGTACCTGACGGAGAGCAACGCGATCGCCTACTACGTGGCCAATGAGCAGCTGCGCGGTGCGAACGACTTCCACCGGGCCGAGGTGCAGTCCTTCCTCAGCTTCGCCGACAATGTGCTGCTGCCTGCTGTCCAGGGCTGGACGTTCCCGATGATTGGCATCGTGCCGTACAACAAGAACAACGTTGAGCGTGCGAAGGAGGAGCTGCGTCGCGGCCTGGCCGCCCTCAACAGCCGCCTGTTGAAGCAGACGTACCTGGTCGGCGAGCGGATCACGCTGGCCGATGTGGTCGTGTTTGCCAC GCTGCT                           ]
[+] EMBL BM587330             [                                    CCGTCGACGGACACGTACTTGTGAAGCACGCGAATACGCCGAATAAAGCCCAAAACGCGTGATTTTTTCTCACAATTGTCCTGCAACAGCATTAAAATGGCCGGTACTCTGTACACTTACCCGGAAAACTTTCGTGCCTACAAAGTGCTGATCGCGGCCCAATACTCCGGCACGCCGGTGAAGGTTGCCGCCGACTTCGTGTTCGGCGAAACCAACTGCAGCGAGCCCTTCCTGCAGAAGTTCCCGAGCGGCAAGGTGCCGGCGTACGAGACTAAGGATGGCAAGTACCTGACGGAGAGCAACGCGATCGCCTACTACGTGGCCAATGAGCAGCTGCGCGGTGCGAACGACTTCCACCGGGCCGAGGTGCAGTCCTTCCTCAGCTTCGCCGACAATGTGCTGCTGCCTGCTGTCCAGGGCTGGACGTTCCCGATGATTGGCATCGTGCCGTACAACAAGAACAACGTTGAGCGTGCGAAGGAGGAGCTGCGTCGCGGCCTGGCCGCCCTCAACAGCCGCCTGCTGAAGCAGACGTACCTGGTCGGCGAGCGGATCACGCTGGCCGATGTGGTCGTGTCTGCCCCGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAA]




>consensus_6386#1
CCGGTTACGACAGTGGCGACCTCCTTTTCATTTCCGCCATCGACGGACACGTACTTGTGA
AGCACGCGAATACGCCGAATAAAGCCCAAAACGCGTGATTTTTTCTCACAATTGTCCTGC
AACAGCATTAAAATGGCCGGTACTCTGTACACTTACCCGGAAAACTTTCGTGCCTACAAA
GTGCTGATCGCGGCCCAATACTCCGGCACGCCGGTGAAGGTTGCCGCCGACTTCGTGTTC
GGCGAAACCAACTGCAGCGAGCCCTTCCTGCAGAAGTTCCCGAGCGGCAAGGTGCCGGCG
TACGAGACTAAGGATGGCAAGTACCTGACGGAGAGCAACGCGATCGCCTACTACGTGGCC
AATGAGCAGCTGCGCGGTGCGAACGACTTCCACCGGGCCGAGGTGCAGTCCTTCCTCAGC
TTCGCCGACAATGTGCTGCTGCCTGCTGTCCAGGGCTGGACGTTCCCGATGATTGGCATC
GTGCCGTACAACAAGAACAACGTTGAGCGTGCGAAGGAGGAGCTGCGTCGCGGCCTGGCC
GCCCTCAACAGCCGCCTGCTGAAGCAGACGTACCTGGTCGGCGAGCGGATCACGCTGGCC
GATGTGGTCGTGTTTGCCACGCTGCTGCCGAGAAGAAGGAGGAGAAGAAGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6386#0      CCGCCCACGCGTCCGCCCACGCGTCCGGGAGAAGGGACACCACCACCAATAGCGGGGCTA 60
consensus_6386#1      ------------------CCGGTTACGACAGTGGCGACCTCCTTTTCATTTCCGC--CAT 40
                                         **  * **  **  * ***  *     ** *  **   *  

consensus_6386#0      CAGCTACTACGTCCCTCCCTCCCCCCTGCAGAACCGGTGTTCCGATTGCGCGCTGTGATG 120
consensus_6386#1      CGACGGACACGTACTTGTGAAGCACGCGAATACGCCGAATAAAGCCCAAAACGCGTGATT 100
                      *  *    **** * *      * *  * * *  * *  *   *          ***** 

consensus_6386#0      TGCCCCCGCTTCGCTCCAGTGACGAACGTGAAACATCCGGTTGGAACCGTCATCTTCCCG 180
consensus_6386#1      TTTTCTCACAATTGTCCTGCAACAGCATTAAAATGGCCGGT--ACTCTGTACACTTACC- 157
                      *   * * *     *** *  **     * ***   *****     * **   *** ** 

consensus_6386#0      TCGCATTAGGATCGCACCCGAGTGGCGCCTCACCTCACCGTGTGCCGCCGCCGTGCATCC 240
consensus_6386#1      -CGGAAAACTTTCGTGCCTACAAAGTGC-TGATCGCGGCCCAATACTCCGGCACGCCGGT 215
                       ** *  *   ***  **      * ** * * * *  *      * *** *  **    

consensus_6386#0      GTTGACTGCCGTAGTTAACGCTCCCACGTTCCCCAGTGCCCCCTTCGCCGTCCCCGGTC- 299
consensus_6386#1      GAAGGTTGCCGC------CGACTTCGTGTTCGGCGAAACCAACTGCAGCGAGCCCTTCCT 269
                      *  *  *****       **    *  ****  *    **  ** *  **  ***   * 

consensus_6386#0      GAGAATCCTCCCGGGCGCCGGTTGTGGCTTGGGATGCCGTGGCGAGAAGAAGACACCTAG 359
consensus_6386#1      GCAGAAGTTCCCGAGCGGCA-----------AGGTGCCGGCGTACGAGA-------CTAA 311
                      *   *   ***** *** *             * *****  *   **         *** 

consensus_6386#0      CTGTTACTGCCCCGTGATAGAGCGAGACGTGTGTGTGTGTTGGTGTGTGAAGAACGAGTT 419
consensus_6386#1      GGATGGCAAGTACCTGACGGAGAGCAACGCGATCGC---CTACTACGTGGCCAATGAGCA 368
                         *  *     * ***  *** *  *** *   *     *  *  ***   ** ***  

consensus_6386#0      TTGGAGCCGCGAGAGTCGAGGCCAACGCGCAGAAATTAGCCCCCAACTGCATTCTCTCGG 479
consensus_6386#1      GCTGCGCGGTGCGAACGACTTCCACCGGGCCGAGGTGCAGTCCTTCCTCAGCTTCGCCGA 428
                         * ** * * **       *** ** ** **  *     **   **    *    ** 

consensus_6386#0      TGACTCATTCCCCGCTCATCCCGCCGGTTGC-TGCTCAAGATGGATGG-ATGGTACACGA 537
consensus_6386#1      CAATGTGCTGCTGCCTGCTGTCCAGGGCTGGACGTTCCCGATGATTGGCATCGTGCCGTA 488
                        *     * *   **  *  *   ** **   * **  ****  *** ** ** *   *

consensus_6386#0      CCATTTGCTCC-TGTGAAAAGGGAAAAGATGGACGCTGCTGCTACTGCAAACACCACTGC 596
consensus_6386#1      CAACAAGAACAACGTTGAGCGTGCGAAGGAGGA-GCTGC-GTCGCGGCCTGGCCGCCCTC 546
                      * *   *  *   **  *  * *  ***  *** ***** *   * **     *  *  *

consensus_6386#0      TACTACTAC-TACTACGACGTACCTTCCTCGTCATCGTGCAA--CGGGCTG-TGGATGTG 652
consensus_6386#1      AACAGCCGCCTGCTGAAGCAGACGTACCTGGTCGGCGAGCGGATCACGCTGGCCGATGTG 606
                       **  *  * * **    *  ** * *** ***  ** **    *  ****   ******

consensus_6386#0      TGCGTGTATTAGAGCGATGGAACCGTCATTGTTCCTCCCGCACACCCCTTCTACA 707
consensus_6386#1      GTCGTGT-TTGCCACGCTGCTGCCGAGAAGAAGGAGGAGAAGAAGGAA------- 653
                        ***** **    ** **   ***  *               *