These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1098 fasta sequence [GAGTTATTGCGCTTNATAGGACAATGAAGTTTTCGAACTACTGTAACTACCGTAACCTTCCTCTGAGGAGCATTGTATACAGAAATTTCTTCGTTTTTTTTTAACCGGCAGACAATCGTCGGACTCAGTAATCAATCATCATTTAGTGAGCAAAAGTATTACGCAAACAACTTTGAACAATCGAAACAATTCCTATTGTGAAGGAGAAGAAGCGGAGGGAGAGGTGATACATTTTCCCAGCACGAGGATTTACTTGTCAAACACACAATCCTCGCCTTTAGAAATAATAATAAAAAAAAGAAACAGATAGATTAAAGGTAGGTGAAAGAGAAGTATCGATGATGAAGAAGAAGTTAGAAAGGCAGAGGCGATGAGCCGCCTTGCTATTCCGGAACATACATCTCCGAGGAGCGCAAAACAAGTAGAGTGAATGCATTTTATGGTTTTGTTTTTATCACCACACACTATTTAATTGTAAGCTGTGTGGTTAGACAGCCGAGTGTGCACCGATTGCAGGCGAACATGTCTGCGAGACAGCACCGTATATGAAGGTATCTGAAATGCACTTGCACGTTGGAGAGCTGCAACTGAGCGTAAGGAGCCGCCCAGGGCGAACAAAGCAAAGCTTAGGAGCTTTCGTGTTTGAGGGCCATATTGAAGTGCACGTGTTGGTTTCATTTAGCCGTAAAAGGATTCTCCTCCATTCCTAGCCCCGTTTATGTATCATAAATATATATGAAAAGGAATTACCTACATACTTGCATTCATAGGCTCTGCATTTTTCTCTCATTTCTGCAGTTTGTTTGAAATTCTTCGTTACTCGAAACCGTTATTTAGGG--CAGTGTTGCAGTGAAGTTGATCTGGATTATTAGTTACGTACGAGCAGAGTTTAAATCTTGTACTCGTTTTAAAAGCTTAATGTAAAAGGGAGTTTTGCTTTTAGTTTTGGTTTAGATCTTAATCTAACGAAAGAGAAAGA-TAGTCGTGCACTGAACCC-AGCGAAA-GAGAAAGAGAGGAAAAGCAAAAAGAGAATGCATTTTTAACTAATGTGGTGTGTGTTCGAATTTGTCTAACAAAATTTTCGATATGAATAAATGT] [+] EMBL BX626195 [GAGTTATTGCGCTTNATAGGACAATGAAGTTTTCGAACTACTGTAACTACCGTAACCTTCCTCTGAGGAGCATTGTATACAGAAATTTCTTCGTTTTTTTTTAACCGGCAGACAATCGTCGGACTCAGTAATCAATCATCATTTAGTGAGCAAAAGTATTACGCAAACAACTTTGAACAATCGAAACAATTCCTATTGTGAAGGAGAAGAAGCGGAGGGAGAGGTGATACATTTTCCCAGCACGAGGATTTACTTGTCAAACACACAATCCTCGCCTTTAGAAATAATAATAAAAAAAAGAAACAGATAGATTAAAGGTAGGTGAAAGAGAAGTATCGATGATGAAGAAGAAGTTAGAAAGGCAGAGGCGATGAGCCGCCTTGCTATTCCGGAACATACATCTCCGAGGAGCGCAAAACAAGTAGAGTGAATGCATTTTATGGTTTTGTTTTTATCACCACACACTATTTAATTGTAAGCTGTGTGGTTAGACAGCCGAGTGTGCACCGATTGCAGGCGAACATGTCTGCGAGACAGCACCGTATATGAAGGTATCTGAAATGCACTTGCACGTTGGAGAGCTGCAACTGAGCGTAAGGAGCCGCCCAGGGCGAACAAAGCAAAGCTTAGGAGCTTTCGTGTTTG ] [+] EMBL BX624529 [ TCCTATTGTGAAGGAGAAGAAGCGGAGGGAGAGGTGATACATTTTCCCAGCACGAGGATTTACTTGTCAAACACACAATCCTCGCCTTTAGAAATAATAATAAAAAAAAGAAACAGATAGATTAAAGGTAGGTGAAAGAGAAGTATCGATGATGAAGAAGAAGTTAGAAAGGCAGAGGCGATGAGCCGCCTTGCTATTCCGGAACATACATCTCCGAGGAGCGCAAAACAAGTAGAGTGAATGCATTTTATGGTTTTGTTTTTATCACCACACACTATTTAATTGTAAGCTGTGTGGTTAGACAGCCGAGTGTGCACCGATTGCAGGCGAACATGTCTGCGAGACAGCACCGTATATGAAGGTATCTGAAATGCACTTGCACGTTGGAGAGCTGCAACTGAGCGTAAGGAGCCGCCCAGGGCGAACAAAGCAAAGCTTAGGAGCTTTCGTGTTTGAGGGCCATATTGAAGTGCACGTGTTGGTTTCATTTAGCCGTAAAAGGATTCTCCTCCATTCCTAGCCCCGTTTATGTATCATAAATATATATGAAAAGGAATTACCTACATACTTGCATTCATAGGCTCTGCATTTTTCTC ] [+] EMBL BX615686 [ AACATGTCTGCGAGACAGCACCGTATATGAAGGTATCTGAAATGCACTTGCACGTTGGAGAGCTGCAACTGAGCGTAAGGAGCCGCCCAGGGCGAACAAAGCAAAGCTTAGGAGCTTTCGTATTTGAGGGCCATATTGAAGTGCACGTGTTGGTTTCATTTAGCCGTAAAAGGATTCTCCTCCATTCCTAGCCCCGTTTATGTATCATAAATATATATGAAAAGGAATTACCTACATACTTGCATTCATAGGCTCTGCATTTTTCTCTCATTTCTGCAGTTTGTTTGAAATTCTTCGTTACTCGAAACCGTTATTTAGGGCACAGTGTTGCAGTGAAGTTGATCTGGATTATTAGTTACGTACGAGCAGAGTTTAAATCTTGTACTCGTTTTAAAAGCTTAATGTAAAAGGGAGTTTTGCTTTTAGTTTTGGTTTAGATCTTAATCTAACGAAAGAGAAAGA TAGTCGTGCACTGAACCC AGCGAAA GAGAAAGAGAGGAAAAGCAAAAAGAGAATGCATTTTTAACTAATGTGGTGTGTGTTCGAATTTGTCTAACAAAATTTTCGATATGAATAAATGT] [-] EMBL CNS08J1Y [ acTATATATGAAAAGGAATTACCTACATACTTGCATTCATAGGCTCTGCATTTTTCTCTCATTTCTGCAGTTTGTTTGAAATTCTTCGTTACTCGAAACCGTTATTTAGGG CAGTGTTGCAGTGAAGTTGATCTGGATTATTAGTTACGTACGAGCAGAGTTTAAATCTTGTACTCGTTTTACAAGCTTAATGTAAAAGGGAGTTTTGCTTTTAGTTTTGGTTTAGATCTTAATCTAACGAAAGAGAAAGACAAGTCGTGCACTGAACCCAAGCGAAAGGAGAAAGAGAGGAAAAGCAAA ] consensusID : consensus_6397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CAGTGTTACATNTCTTGATGTTGTGAAGCGGCCGCAACATGCCTGGTCNTTTTTTTATTTTTTACCGGCAGACAATCGTCGGACTCAGTAATCAATCATCATTTAGTGAGCAAAAGTATTACGCAAACAACTTTGAACAATCGAAACAATTCCTATTGTGAAGGAGAAGAAGCGGAGGGAGAGGTGATACATTTTCCCAGCACGAGGATTTACTTGTCAAACACACAATCCTCGCCTTTAGAAATAATAATAAAAAAAAGAAGCAGATAGATTAAAGGTAGGTGACAGAGAAGTATCGATGATGAAGAAGAAGTTAGAAAGGCAGAGGCGATGAGCCGCGTTGCAATTCCGGAACATACATCTCCGAGGAGCGCAAAACAAGTTGAGTGAATGCATTTTATGGTTTTGTTTTGTATCACCACGACACTATTTAATTGTAAGCTGTGTGGTTAGACAGCCGAGTGTGCACCGATTGCAGGCGAACATGTCTGCGAGACAGCACCGTATATGAAGGTATCTGAAATGCACTTGCACGTTGGAGAGCTGCAACTGAGCGTAAGGAGCCGCCCAGGGCGAACAAAGCAAAGGCTTAGGAGCTTTCGGTATTTGAGGGCCATATTGAAGTGCACGTGTNGGTTTCATT] [+] EMBL BX466333 [CAGTGTTACATNTCTTGATGTTGTGAAGCGGCCGCAACATGCCTGGTCNTTTTTTTATTTTTTACCGGCAGACAATCGTCGGACTCAGTAATCAATCATCATTTAGTGAGCAAAAGTATTACGCAAACAACTTTGAACAATCGAAACAATTCCTATTGTGAAGGAGAAGAAGCGGAGGGAGAGGTGATACATTTTCCCAGCACGAGGATTTACTTGTCAAACACACAATCCTCGCCTTTAGAAATAATAATAAAAAAAAGAAGCAGATAGATTAAAGGTAGGTGACAGAGAAGTATCGATGATGAAGAAGAAGTTAGAAAGGCAGAGGCGATGAGCCGCGTTGCAATTCCGGAACATACATCTCCGAGGAGCGCAAAACAAGTTGAGTGAATGCATTTTATGGTTTTGTTTTGTATCACCACGACACTATTTAATTGTAAGCTGTGTGGTTAGACAGCCGAGTGTGCACCGATTGCAGGCGAACATGTCTGCGAGACAGCACCGTATATGAAGGTATCTGAAATGCACTTGCACGTTGGAGAGCTGCAACTGAGCGTAAGGAGCCGCCCAGGGCGAACAAAGCAAAGGCTTAGGAGCTTTCGGTATTTGAGGGCCATATTGAAGTGCACGTGTNGGTTTCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6397#0 GAGTTATTGCGCTTNATAGGACAATGAAGTTTTCGAACTACTGTAAC-TACCGTAACCTT 59 consensus_6397#1 --------------------------------------CAGTGTTACATNTCTTGATGTT 22 * *** ** * * * * ** consensus_6397#0 CCTCTGAGGAGCATTGTATACAGAAATTTCTTCGTTTTTTTTTAACCGGCAGACAATCGT 119 consensus_6397#1 G---TGAAGCGGCCGCAACATGCCTGGTCNTTTTTTTATTTTTTACCGGCAGACAATCGT 79 *** * * * * * ** *** ***** **************** consensus_6397#0 CGGACTCAGTAATCAATCATCATTTAGTGAGCAAAAGTATTACGCAAACAACTTTGAACA 179 consensus_6397#1 CGGACTCAGTAATCAATCATCATTTAGTGAGCAAAAGTATTACGCAAACAACTTTGAACA 139 ************************************************************ consensus_6397#0 ATCGAAACAATTCCTATTGTGAAGGAGAAGAAGCGGAGGGAGAGGTGATACATTTTCCCA 239 consensus_6397#1 ATCGAAACAATTCCTATTGTGAAGGAGAAGAAGCGGAGGGAGAGGTGATACATTTTCCCA 199 ************************************************************ consensus_6397#0 GCACGAGGATTTACTTGTCAAACACACAATCCTCGCCTTTAGAAATAATAATAAAAAAAA 299 consensus_6397#1 GCACGAGGATTTACTTGTCAAACACACAATCCTCGCCTTTAGAAATAATAATAAAAAAAA 259 ************************************************************ consensus_6397#0 GAAACAGATAGATTAAAGGTAGGTGAAAGAGAAGTATCGATGATGAAGAAGAAGTTAGAA 359 consensus_6397#1 GAAGCAGATAGATTAAAGGTAGGTGACAGAGAAGTATCGATGATGAAGAAGAAGTTAGAA 319 *** ********************** ********************************* consensus_6397#0 AGGCAGAGGCGATGAGCCGCCTTGCTATTCCGGAACATACATCTCCGAGGAGCGCAAAAC 419 consensus_6397#1 AGGCAGAGGCGATGAGCCGCGTTGCAATTCCGGAACATACATCTCCGAGGAGCGCAAAAC 379 ******************** **** ********************************** consensus_6397#0 AAGTAGAGTGAATGCATTTTATGGTTTTGTTTT-TATCACCAC-ACACTATTTAATTGTA 477 consensus_6397#1 AAGTTGAGTGAATGCATTTTATGGTTTTGTTTTGTATCACCACGACACTATTTAATTGTA 439 **** **************************** ********* **************** consensus_6397#0 AGCTGTGTGGTTAGACAGCCGAGTGTGCACCGATTGCAGGCGAACATGTCTGCGAGACAG 537 consensus_6397#1 AGCTGTGTGGTTAGACAGCCGAGTGTGCACCGATTGCAGGCGAACATGTCTGCGAGACAG 499 ************************************************************ consensus_6397#0 CACCGTATATGAAGGTATCTGAAATGCACTTGCACGTTGGAGAGCTGCAACTGAGCGTAA 597 consensus_6397#1 CACCGTATATGAAGGTATCTGAAATGCACTTGCACGTTGGAGAGCTGCAACTGAGCGTAA 559 ************************************************************ consensus_6397#0 GGAGCCGCCCAGGGCGAACAAAGCAAAG-CTTAGGAGCTTTCG-TGTTTGAGGGCCATAT 655 consensus_6397#1 GGAGCCGCCCAGGGCGAACAAAGCAAAGGCTTAGGAGCTTTCGGTATTTGAGGGCCATAT 619 **************************** ************** * ************** consensus_6397#0 TGAAGTGCACGTGTTGGTTTCATTTAGCCGTAAAAGGATTCTCCTCCATTCCTAGCCCCG 715 consensus_6397#1 TGAAGTGCACGTGTNGGTTTCATT------------------------------------ 643 ************** ********* consensus_6397#0 TTTATGTATCATAAATATATATGAAAAGGAATTACCTACATACTTGCATTCATAGGCTCT 775 consensus_6397#1 ------------------------------------------------------------ consensus_6397#0 GCATTTTTCTCTCATTTCTGCAGTTTGTTTGAAATTCTTCGTTACTCGAAACCGTTATTT 835 consensus_6397#1 ------------------------------------------------------------ consensus_6397#0 AGGGCAGTGTTGCAGTGAAGTTGATCTGGATTATTAGTTACGTACGAGCAGAGTTTAAAT 895 consensus_6397#1 ------------------------------------------------------------ consensus_6397#0 CTTGTACTCGTTTTAAAAGCTTAATGTAAAAGGGAGTTTTGCTTTTAGTTTTGGTTTAGA 955 consensus_6397#1 ------------------------------------------------------------ consensus_6397#0 TCTTAATCTAACGAAAGAGAAAGATAGTCGTGCACTGAACCCAGCGAAAGAGAAAGAGAG 1015 consensus_6397#1 ------------------------------------------------------------ consensus_6397#0 GAAAAGCAAAAAGAGAATGCATTTTTAACTAATGTGGTGTGTGTTCGAATTTGTCTAACA 1075 consensus_6397#1 ------------------------------------------------------------ consensus_6397#0 AAATTTTCGATATGAATAAATGT 1098 consensus_6397#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||