These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1005 fasta sequence [GGCAGTAGCAGTAGTACCTCCTCTTATATCCGCTGGCATCGACCTGTAAATGATTTACTCGAAAACCATGGCCTAAACATGAGCGAATCTCGTCGGGTACCAGCCTGGGTGGGTACAACGACCTGGCAAGAAGCACATCAACACCCGTCCTTTACGCTAGTGAATATTTCAAACAAGGTGGAACAGTTGCACGATGCCGAAAGTGACGAGGACTCGCATGGCGACGGTCAGTACCCGGTGGTACACACAGAGCTGCTTCCGTTCGGAAATCGGTACGAGGAAGAGTCGATCGAATCGATCGCTGCGAACGGAGCACCAAAGGCCATCCTTCATTATGTGGCACCGTCCGTGGCTCACTTTGACGATTTCGATGACTACGACGAAATATTGCCGCAGGTGCATCAGGTGAAGCCAAAACCTCCGAACAGCGAGATAGAAGACGAGGAGGAGGAGGAGTACGTAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATCGAGGAATTTGAAACAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGACTAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAGCGAACGGCACACACGATCGGTGACAAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACCATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACAACGATATGTACCAGTCCGAGCAGCGTAGCCGGGCCAAGCGCGGTTGGATGGAACCGCACGCAGACACGGAGGCCATGGACTTCCCGTCAGCCGAA-GGGGCGCTGCTTACCATTTC-TTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTTAAACGCACCCGGCGCCAAACGGTTGATCC] [+] EMBL BX621860 [GGCAGTAGCAGTAGTACCTCCTCTTATATCCGCTGGCATCGACCTGTAAATGATTTACTCGAAAACCATGGCCTAAACATGAGCGAATCTCGTCGGGTACCAGCCTGGGTGGGTACAACGACCTGGCAAGAAGCACATCAACACCCGTCCTTTACGCTAGTGAATATTTCAAACAAGGTGGAACAGTTGCACGATGCCGAAAGTGACGAGGACTCGCATGGCGACGGTCAGTACCCGGTGGTACACACAGAGCTGCTTCCGTTCGGAAATCGGTACGAGGAAGAGTCGATCGAATCGATCGCTGCGAACGGAGCACCAAAGGCCATCCTTCATTATGTGGCACCGTCCGTGGCTCACTTTGACGATTTCGATGACTACGACGAAATATTGCCGCAGGTGCATCAGGTGAAGCCAAAACCTCCGAACAGCGAGATAGAAGACGAGGAGGAGGAGGAGTACGTAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATCGAGGAATTTGAAACAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGACTAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAGCGAACGGCACACACGATCGGTGACNAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACCATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACNACGATATGTACCAGTCCGAGCAGCGTAGCCGGGTC AGCGCGGTTGGATNGAACCGCACGCAGACACGGAGGCCATGG ] [+] EMBL BX614808 [ CGAACAGCGAGATAGAAGTAGAGGAGGAGGAGGAGTACGTAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATTGAGGAATTTGAAACAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGACTAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAGCGAACGGCACACACGATCGGTGACAAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACCATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACAACGATATGTACCAGTCCGAGCAGCGTAGCCGGGCCAAGCGCGGTTGGATGGAACCGCACGCAGACACGGAGGCCATGGACTTCCCGTCAGCCGAA GGGGCGCTGCTTACCATTTC TTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTTAAACGCACCCGGCGCCAAACGGTTGATCC] [+] EMBL BX616749 [ GGAGGAGGAGTACGTAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATCGAGGAATTTGAAACAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGACTAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAGCGAACGGCACACACGATCGGTGACAAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACCATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACAACGATATGTACCAGTCCGAGCAGCGTAGCCGTGCCAAGCGCGGTTGGATGGAACCGCACGCAGACACGGAGGCCATGGACTTCCCGTCAGCCGAAGGGGGCGCTGCTTACCATTTCTTTTTCTCACCTT ] consensusID : consensus_6403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [TTTAATCTATTCCAGCTAAACCAGCCTAACATATATCATCACTAAAAAGAGCCTCCTAGTAAACAGCGATCGAAAATTCACAAATATACGAAATCTAATGAAAGCGTAAACAAAAACTCATACCCTTGCGTGTAATCAACCAAATAGAGCACTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCGATTTTATGGCAGATTGTGAGTTGTTGTCCCCAGTTTGGTGTCCTTTCTATTTTGTACCTTCCATTCCTTGTCGAGATAATTATGATCTTGCACATTTTTGCATTGTTCCAGCAACCAAAAAAGCCTTCAGTGGATAAGTTTTGTGTGTGGTGCGTTCTATAAAGAAAATAACAACTACATTTCTTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTAAACGCACCCGGCGACAAACGGTTGAACCGCACGAACTGCAGGTGATCCTGGGTGCACTCAATGGCTTTCGGCCCACGTAGTACACCACCTCAGGCGTGTGCTGCTTACTTTTTGGAGGCAATTTTACAAGCTGTCTATAATTCATTTCTCATTTGATTCGGACGCGTGGGCGG] [-] EMBL BM593090 [TTTAATCTATTCCAGCTAAACCAGCCTAACATATATCATCACTAAAAAGAGCCTCCTAGTAAACAGCGATCGAAAATTCACAAATATACGAAATCTAATGAAAGCGTAAACAAAAACTCATACCCTTGCGTGTAATCAACCAAATAGAGCACTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCGATTTTATGGCAGATTGTGAGTTGTTGTCCCCAGTTTGGTGTCCTTTCTATTTTGTACCTTCCATTCCTTGTCGAGATAATTATGATCTTGCACATTTTTGCATTGTTCCAGCAACCAAAAAAGCCTTCAGTGGATAAGTTTTGTGTGTGGTGCGTTCTATAAAGAAAATAACAACTACATTTCTTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTAAACGCACCCGGCGACAAACGGTTGAACCGCACGAACTGCAGGTGATCCTGGGTGCACTCAATGGCTTTCGGCCCACGTAGTACACCACCTCAGGCGTGTGCTGCTTACTTTTTGGAGGCAATTTTACAAGCTGTCTATAATTCATTTCTCATTTGATTCGGACGCGTGGGCGG] consensusID : consensus_6403#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [ATGAAAGCGTAAACAAAAACTCATACCCTTGCGTGTAATCAACCAAATAGAGCACTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCGATTTTATGGCAGATTGTGAGTTGTTGTCTAAAACAGTTAAGAAAAAATCAGCAATAAGTTCTAGTCACGTTATAAGTTCTTACCCCCAGTTTGGTGTCCTTTCTATTTTGTACCTTCCATTCCCTGTCGAGATAATTATGATCCATTGGCAGTTTTTTTTCGAATCTTGCACATTTTTGCATTGTTCCAGCAACCAAAAAAGCCTTCAGTGGATAAGTTTTGTGTGTGGTGCGTTCTATAAAGAAAATAACAACTACTAACAACAAGGAAGATAAGCAACATCGCAAAACAAATTAACTAGATTATTTGTAATTTGTGTAAGAGTTCGCTTTAAATTTGGGTTTTTTATGTGTTTAATGTGCGTAGTATTGAAGTTAGCTTTGCTTTAACAGTTCAGGCTACTCCAACTAATAGTGAAGAGAAAAAAAGAAAACTCTTTTAGATGTAAATCTTACAAC] [+] EMBL BX618884 [ATGAAAGCGTAAACAAAAACTCATACCCTTGCGTGTAATCAACCAAATAGAGCACTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCGATTTTATGGCAGATTGTGAGTTGTTGTCTAAAACAGTTAAGAAAAAATCAGCAATAAGTTCTAGTCACGTTATAAGTTCTTACCCCCAGTTTGGTGTCCTTTCTATTTTGTACCTTCCATTCCCTGTCGAGATAATTATGATCCATTGGCAGTTTTTTTTCGAATCTTGCACATTTTTGCATTGTTCCAGCAACCAAAAAAGCCTTCAGTGGATAAGTTTTGTGTGTGGTGCGTTCTATAAAGAAAATAACAACTACTAACAACAAGGAAGATAAGCAACATCGCAAAACAAATTAACTAGATTATTTGTAATTTGTGTAAGAGTTCGCTTTAAATTTGGGTTTTTTATGTGTTTAATGTGCGTAGTATTGAAGTTAGCTTTGCTTTAACAGTTCAGGCTACTCCAACTAATAGTGAAGAGAAAAAAAGAAAACTCTTTTAGATGTAAATCTTACAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6403#1 -----------------TTTAATCTATTCCAGCTAAACCAGCCTAACATATATCATCACT 43 consensus_6403#2 ------------------------------------------------------------ consensus_6403#0 GGCAGTAGCAGTAGTACCTCCTCTTATATCCGCTGGCATCGACCTGTAAATGATTTACTC 60 consensus_6403#1 AAAAAGAGCCTCCTAGTAAACAGCGA------TCGAAAATTCAC----AAATATACGAAA 93 consensus_6403#2 ------------------------------------------------------------ consensus_6403#0 GAAAACCATGGCCTAAACATGAGCGAATCTCGTCGGGTACCAGCCTGGGTGGGTACAACG 120 consensus_6403#1 TCTAATGAAAGCGTAAACAAAAACTCATACCCT-TGCGTGTAATCAAC-CAAATAGAGCA 151 consensus_6403#2 ----ATGAAAGCGTAAACAAAAACTCATACCCT-TGCGTGTAATCAAC-CAAATAGAGCA 54 consensus_6403#0 ACCTGGCAAGAAGCACATCAACACCCGTCCTTTACGCTAGTGAATATTTCAAACAAGGTG 180 ** * * * ** ** * * * * ** ** * * **** * * consensus_6403#1 CTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCG-ATTTTAT 210 consensus_6403#2 CTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCG-ATTTTAT 113 consensus_6403#0 GAACAGTTGCACGATGCCGAAAGTGACGAGGA-CTCGCATGGCGACGGTCAGTACCCGGT 239 * * *** * * * * * ** * ** ** * * * consensus_6403#1 GGCAGATTGTGAGTTGTTGTC--------------------------------------- 231 consensus_6403#2 GGCAGATTGTGAGTTGTTGTCTAAAACAGTTAAGAAAAAATCAGCAATAAGTTCTAGTCA 173 consensus_6403#0 GGTACACACAGAGCTGCTTCCGTTCGGAAATCGGTACGAGGAAGAGTCGATCGAATCGAT 299 ** * * *** ** * * consensus_6403#1 -----------------CCCAGTTTGGTGTCCTTT-CTATTTTGTACCTTCCATTCCTTG 273 consensus_6403#2 CGTTATAAGTTCTTACCCCCAGTTTGGTGTCCTTT-CTATTTTGTACCTTCCATTCCCTG 232 consensus_6403#0 CGCTGCGAA---CGGAGCACCAAAGGCCATCCTTCATTATGTGGCACCGTCCGTGGCTCA 356 * * * ***** *** * * *** *** * * consensus_6403#1 TCGAGATAATTATGATC-----------------------TTGCACATTTTTGCAT-TGT 309 consensus_6403#2 TCGAGATAATTATGATCCATTGGCAGTTTTTTTTCGAATCTTGCACATTTTTGCAT-TGT 291 consensus_6403#0 CTTTGACGATTTCGATGACTACGA----------------CGAAATATTGCCGCAGGTGC 400 ** *** *** * *** *** ** consensus_6403#1 TCCAGCAACCAAAAAAGCCTTC----AGTG-GATAAGTTTTGTGTGTGGTGCGTTCTATA 364 consensus_6403#2 TCCAGCAACCAAAAAAGCCTTC----AGTG-GATAAGTTTTGTGTGTGGTGCGTTCTATA 346 consensus_6403#0 ATCAGGTGAAGCCAAAACCTCCGAACAGCGAGATAGAAGACGAGGAGGAGGAGGAGTACG 460 *** *** *** * ** * **** * * * * * ** consensus_6403#1 AAGAAAATAACAAC-TACATTTCTTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTG 423 consensus_6403#2 AAGAAAATAACAAC-TACTAACAACAAGGAAGATAAGCAACATCGCAAAACAAATTAAC- 404 consensus_6403#0 TAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATCGAGGAATTTGAAA 520 **** * * ** ** * * * ** * consensus_6403#1 CTACAG-GTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGC 482 consensus_6403#2 ---TAG-ATTATTTGTAATTT----GTGTAAGAGTTCGCTT----TAAATTTGGGTTTTT 452 consensus_6403#0 CAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGAC 580 * * * * * * * * consensus_6403#1 CACACCGGTGTCGGGCGGATTACTAGTTAAACGCACCCGGCGACAAACGGTTGAACCGCA 542 consensus_6403#2 TATGTGTTTAATGTGCGTAGTATTG---AAGTTAGCTTTGCTTTAACAGTTCAGGCTACT 509 consensus_6403#0 TAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAG-CGAACGGCA 639 * * * * ** * * consensus_6403#1 CGAACTGCAGGTGAT--CCTGGGTGCACTCAATGGCTTTCG-GCCCACGTAGTACACCAC 599 consensus_6403#2 CCAACTAATAGTGAA--GAGAAAAAAAGAAAACTCTTTTAG-ATGTAAATCTTACAAC-- 564 consensus_6403#0 CACACGATCGGTGACAAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACC 699 * ** **** * * * * * consensus_6403#1 CTCAGGCGTGTGCTGCTTACTTTTTGGAGGCAATTTTACAAGCTGT-CTATAATTCATTT 658 consensus_6403#2 ------------------------------------------------------------ consensus_6403#0 ATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACAACGATATGTACCAGTCCGAGCAG 759 consensus_6403#1 CTCATTTGATTCGGACGCG--TGGGCGG-------------------------------- 684 consensus_6403#2 ------------------------------------------------------------ consensus_6403#0 CGTAGCCGGGCCAAGCGCGGTTGGATGGAACCGCACGCAGACACGGAGGCCATGGACTTC 819 consensus_6403#1 ------------------------------------------------------------ consensus_6403#2 ------------------------------------------------------------ consensus_6403#0 CCGTCAGCCGAAGGGGCGCTGCTTACCATTTCTTTTCTCACCTTCGCCGTATTTCTGATC 879 consensus_6403#1 ------------------------------------------------------------ consensus_6403#2 ------------------------------------------------------------ consensus_6403#0 AAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTC 939 consensus_6403#1 ------------------------------------------------------------ consensus_6403#2 ------------------------------------------------------------ consensus_6403#0 GCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTTAAACGCACCCGGCGCCAAACGGT 999 consensus_6403#1 ------ consensus_6403#2 ------ consensus_6403#0 TGATCC 1005 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||