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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1222 fasta sequence
[GCGAAGGTGGTGGGGGGTAGCACAACCCCATTTGCTACCGCGCACACCCTTTATAAATTGTATATGTATGAAGAATTGTGGGAGGGCTTGTGGGAGACGGGAAGAATGGTATAGTTTGAAACGGGCGGTGCAAGGCAAACAGTGACAGTTGATGATAGCAAACAAATGAAGTAAATAAGCATGTAACGTGTGATAAGAAAACAAAAACAAAAACCGGAAGTGAGAAAACGGCTAGTTGCGGGCGGAAAAGCGCTCACATCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACATTAGCTACTTCAAACGAGGACGAAGGAAGTCGAGCGACAAAAGCAGTTGAGAAAAGAGAGAGAGAAAAGAGTAGGAGTAGGAGAAAAGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAAAGCACAACACCTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTTTAATCAAAAATACCAACGACGAGCACGCGGTATAAATCTCTCGTTCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAACGCGCATCGAGCGCACACAAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATACACTGCTGGCTACCACGAATTCAGATGTGTTCTATACTATTTTACAAAGCGAGAACAGCAGCATACACAGCTGCCCCGCGTGGCAATTGAATCAAGCAAACAGAACAAACAACTGAAAATACTGAAATATCCAAGCAGAAGAACAAAACAATGAAAAGTGAAGAAAACTTGTTGTTATCGTGTAAGTCTTTTGAGAATCTATAGAACATAACACAAACACACATAACTACAACAACAACACATTAAATACTTTAACAATTGTAATAGTGATCATAAAACACATCACTAA]
[+] EMBL CNS08G85 [GCGAAGGTGGTGGGGGGTAGCACAACCCCATTTGCTACCGCGCACACCCTTTATAAATTGTATATGTATGAAGAATTGTGGGAGGGCTTGTGGGAGACGGGAAGAATGGTATAGTTTGAAACGGGCGGTGCAAGGCAAACAGTGACAGTTGATGATAGCAAACAAATGAAGTAAATAAGCATGTAACGTGTGATAAGAAAACAAAAACAAAAACCGGAAGTGAGAAAACGGCTAGTTGCGGGCGGAAAAGCGCTCACATCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACATTAGCTACTTCAAACGAGGACGAAGGAAGTCGAGCGACAAAAGCAGTTGAGAAAAGAGAGAGAGAAAAGAGTAGGAGTAGGAGAAAAGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAAAGCACAACACCTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTTTAATCAAAAATACCAACGACGAGCACGCGGTATAAATCTCTCGTTCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAACGCGCATCGAGCGCACACAAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAAC ]
[-] EMBL CNS08G86 [ AGTAGGAGTAGGAGAAAAGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATAAAAAAACACACGACCACCGCCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAAAGCACAACACCTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTTTAATCAAAAATACCAACGACGAGCACGCGGTATAAATCTCTCGTTCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAACGCGCATCGAGCGCACACAAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATACACTGCTGGCTACCACGAATTCAGATGTGTTCTATACTATTTTACAAAGCGAGAACAGCAGCATACACAGCTGCCCCGCGTGGCAATTGAATCAAGCAAACAGAACAAACAACTGAAAATACTGAAATATCCAAGCAGAAGAACAAAACAATGAAAAGTGAAGAAAACTTGTTGTTATCGTGTAAGTCTTTTGAGAATCTATAGAACATAACACAAACACACATAACTACAACAACAACACATTAAATACTTTAACAATTGTAATAGTGATCATAAAA ]
[-] EMBL CNS08LIK [ ACTAAATTTCGCGTTTGTTTTTTTTATCGTTATTATTTACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATACACTGCTGGCTACCACGAATTCAGATGTGTTCTATACTATTTTACAAAGCGAGAACAGCAGCATACACAGCTGCCCCGCGTGGCAATTGAATCAAGCAAACAGAACAAACAACTGAAAATACTGAAATATCCAAGCAGAAGAACAAAACAATGAAAAGTGAAGAAAACTTGTTGTTATCGTGTAAGTCTTTTGAGAATCTATAGAACATAACACAAACACACATAACTACAACAACAACACATTAAATACTTTAACAATTGTAATAGTGATCATAAAACACATCACTAA]
consensusID : consensus_6412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACATTAGCTACTTCAAACGAGGACGAAGGAAGACGAGCGACAAAAGCAGTTGAAAAGAGAGAGAGAAAAGGGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTCTTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACACATTTGAACGCAAAAGTTGTTAGAAAGCACAACACTTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTAACCAAAAACACAAACGACGAGCACGCGGTATTAATCTCTCGTTTCTTATCCCCTTCGCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAGCGCGCATCGAGCGCGCACGAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATA]
[+] EMBL BM631866 [CCGCCCACGCGTCCGCCCACGCGTCCGCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACATTAGCTACTTCAAACGAGGACGAAGGAAGACGAGCGACAAAAGCAGTTGAAAAGAGAGAGAGAAAAGGGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTCTTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACACATTTGAACGCAAAAGTTGTTAGAAAGCACAACACTTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTAACCAAAAACACAAACGACGAGCACGCGGTATTAATCTCTCGTTTCTTATCCCCTTCGCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAGCGCGCATCGAGCGCGCACGAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATA]
consensusID : consensus_6412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[GGCAAGAATCGCCCGAGGNTACAAAGCAGTTGAAAAGAGAGAAAATGAGAGAGAGAGAAGGATAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCATGGATAGAGAAGAGATTGTTTCAGTTCTTTTCCCATTGAAAAGCACCACTGTACACAAGACATATACACACTCACGACCACCACCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAGAGCACAAAACCTTATCATGCGTGCAGTGGCGGATGCACCAACGGTACAGCGCAAATCTGGCAGCGCGCATCTGAGCGCGCACGAAACACCGGTTGTGGTTAAACATTAGCTTAACTGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCCGGAACACANACAAACTAANATGTCGCGGCTNAGAGTTCATCGTTATCATTCACAGCAGAAACGAACGANCGAACAAACACGCANATGAACGAAATCACNNACACTNCTCGAAAACAAAAATGTACACTTTACCAAATACACTGCTGGCTACCACGAATTCCACGATGTGTTCTATACCTATTCTCACACANAGCGACGAACAGCAGCACTACTACGCCTTGCCCCGCTGCTGNG]
[+] EMBL AL931860 [GGCAAGAATCGCCCGAGGNTACAAAGCAGTTGAAAAGAGAGAAAATGAGAGAGAGAGAAGGATAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCATGGATAGAGAAGAGATTGTTTCAGTTCTTTTCCCATTGAAAAGCACCACTGTACACAAGACATATACACACTCACGACCACCACCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAGAGCACAAAACCTTATCATGCGTGCAGTGGCGGATGCACCAACGGTACAGCGCAAATCTGGCAGCGCGCATCTGAGCGCGCACGAAACACCGGTTGTGGTTAAACATTAGCTTAACTGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCCGGAACACANACAAACTAANATGTCGCGGCTNAGAGTTCATCGTTATCATTCACAGCAGAAACGAACGANCGAACAAACACGCANATGAACGAAATCACNNACACTNCTCGAAAACAAAAATGTACACTTTACCAAATACACTGCTGGCTACCACGAATTCCACGATGTGTTCTATACCTATTCTCACACANAGCGACGAACAGCAGCACTACTACGCCTTGCCCCGCTGCTGNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6412#0 GCGAAGGTGGTGGGGGGTAGCACAACCCCATTTGCTACCGCGCACACCCTTTATAAATTG 60
consensus_6412#1 ------------------------------------------------------------
consensus_6412#2 ------------------------------------------------------------
consensus_6412#0 TATATGTATGAAGAATTGTGGGAGGGCTTGTGGGAGACGGGAAGAATGGTATAGTTTGAA 120
consensus_6412#1 ------------------------------------------------------------
consensus_6412#2 ------------------------------------------------------------
consensus_6412#0 ACGGGCGGTGCAAGGCAAACAGTGACAGTTGATGATAGCAAACAAATGAAGTAAATAAGC 180
consensus_6412#1 ------------------------------------------------------------
consensus_6412#2 ------------------------------------------------------------
consensus_6412#0 ATGTAACGTGTGATAAGAAAACAAAAACAAAAACCGGAAGTGAGAAAACGGCTAGTTGCG 240
consensus_6412#1 -----------------------------------------------CCGCCCA--CGCG 11
consensus_6412#2 ------------------------------------------------------------
consensus_6412#0 GGCGGAAAAGCGCTCACATCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACAT 300
consensus_6412#1 TCCGCCCACGCGTCCGCA---AACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACAT 68
consensus_6412#2 ------------------------------------------------------------
consensus_6412#0 TAGCTACTTCAAACGAGGACGAAGGAAGTCGAGCGACA-AAAGCAGTTGAGAAAAGAGAG 359
consensus_6412#1 TAGCTACTTCAAACGAGGACGAAGGAAGACGAGCGACA-AAAGCAGTTGA--AAAGAGAG 125
consensus_6412#2 -----------------GGCAAGAATCGCCCGAGGNTACAAAGCAGTTGAAAAGAGAGAA 43
* * * * * * * *********** * *****
consensus_6412#0 AGAGAAAAGAGTAGGAGTAGGAGAAAAGAAAGTGAGTAGGATGCTAGAACATTGTTTAGT 419
consensus_6412#1 AGAGAAAAGGG-----------------AAAGTGAGTAGGATGCTAGAACATTGTTTAGT 168
consensus_6412#2 AATGAGAGAGAGA--------------GAAGGATAGTAGGATGCTAGAACATTGTTTAGT 89
* ** * ** * **************************
consensus_6412#0 TAAGGATAGTAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTT----TTTTTCCATTGA 475
consensus_6412#1 TAAGGAT---AGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTCTTTTTTTTCCATTGA 225
consensus_6412#2 TAAGGATAGTAGAGCCCATGGATAGAGAAGAGATTGTTTCAGTTC---TTTTCCCATTGA 146
******* ******** ************************* **** *******
consensus_6412#0 AAAGCACCAC-GTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACGCAT 534
consensus_6412#1 AAAGCACCAC-GTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACACAT 284
consensus_6412#2 AAAGCACCACTGTACACAAGACATATACACACTCAC--GACCACCACCGTTAAAACGCAT 204
********** ********************* *** ******* ********** ***
consensus_6412#0 TCGAACGCAAAAGTTGTTAGAAAGCACAACACCTTATCATTCCCCTCTCTTGTGGGGTAT 594
consensus_6412#1 TTGAACGCAAAAGTTGTTAGAAAGCACAACACTTTATCATTCCCCTCTCTTGTGGGGTAT 344
consensus_6412#2 TCGAACGCAAAAGTTGTTAGAGAGCACAAAACCTTATCAT-------------------- 244
* ******************* ******* ** *******
consensus_6412#0 GATTTGTTTGTTTTTTTTTTTTAATCAAAAATACCAACGACGAGCACGCGGTATAAATCT 654
consensus_6412#1 GATTTGTTTGTTTTTTTTT--TAACCAAAAACACAAACGACGAGCACGCGGTATTAATCT 402
consensus_6412#2 ------------------------------------------------------------
consensus_6412#0 CTCGTT--------------CATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAA 700
consensus_6412#1 CTCGTTTCTTATCCCCTTCGCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAA 462
consensus_6412#2 ---G----------------------------CGTGCAGTGGCGGATGCACCAACGGTA- 272
* * *************************
consensus_6412#0 CAGCGCAAATCTGGCAACGCGCATC-GAGCGCACACAAAACACCGGTTGTGGTTAAACAT 759
consensus_6412#1 CAGCGCAAATCTGGCAGCGCGCATC-GAGCGCGCACGAAACACCGGTTGTGGTTAAACAT 521
consensus_6412#2 CAGCGCAAATCTGGCAGCGCGCATCTGAGCGCGCACGAAACACCGGTTGTGGTTAAACAT 332
**************** ******** ****** *** ***********************
consensus_6412#0 TAGTTAA--TGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAA----AAAA 813
consensus_6412#1 TAGTTAA--TGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAA----AAAA 575
consensus_6412#2 TAGCTTAACTGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCCGGAACACANACA 392
*** * * ************************************** * ** * *
consensus_6412#0 AACTAAA-TGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACG 872
consensus_6412#1 AACTAAA-TGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACG 634
consensus_6412#2 AACTAANATGTCGCGGCTNAGAGTT-CATCGTTATCATTCACAGCAGAAACGAACGANCG 451
****** ******* * *** ******************************* **
consensus_6412#0 AACAAA-ACGCAA-TGAACGAAATCACAA---TATATCGAAAACAAAAATGTACACCTTA 927
consensus_6412#1 AACAAA-ACGCAA-TGAACGAAATCACAA---TATATCGAAAACAAAAATGTACACCTTA 689
consensus_6412#2 AACAAACACGCANATGAACGAAATCACNNACACTNCTCGAAAACAAAAATGTACACTTTA 511
****** ***** ************* ******************** ***
consensus_6412#0 CCAA-TACACTGCTGGCTACCACGAATTCAGATGTGTTCTATACTATTTTACAAAGCGAG 986
consensus_6412#1 CCAA-TA----------------------------------------------------- 695
consensus_6412#2 CCAAATACACTGCTGGCTACCACGAATTCCACGATGTGTTCTATACCTATTCTCACACAN 571
**** **
consensus_6412#0 AACAGCAGCATACACAGCTGCCCCGCGTGGCAATTGAATCAAGCAAACAGAACAAACAAC 1046
consensus_6412#1 ------------------------------------------------------------
consensus_6412#2 AGCGACGAACAGCAGCACTACTACGCCTTGCCCCGCTGCTGNG----------------- 614
consensus_6412#0 TGAAAATACTGAAATATCCAAGCAGAAGAACAAAACAATGAAAAGTGAAGAAAACTTGTT 1106
consensus_6412#1 ------------------------------------------------------------
consensus_6412#2 ------------------------------------------------------------
consensus_6412#0 GTTATCGTGTAAGTCTTTTGAGAATCTATAGAACATAACACAAACACACATAACTACAAC 1166
consensus_6412#1 ------------------------------------------------------------
consensus_6412#2 ------------------------------------------------------------
consensus_6412#0 AACAACACATTAAATACTTTAACAATTGTAATAGTGATCATAAAACACATCACTAA 1222
consensus_6412#1 --------------------------------------------------------
consensus_6412#2 --------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||