These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1222 fasta sequence [GCGAAGGTGGTGGGGGGTAGCACAACCCCATTTGCTACCGCGCACACCCTTTATAAATTGTATATGTATGAAGAATTGTGGGAGGGCTTGTGGGAGACGGGAAGAATGGTATAGTTTGAAACGGGCGGTGCAAGGCAAACAGTGACAGTTGATGATAGCAAACAAATGAAGTAAATAAGCATGTAACGTGTGATAAGAAAACAAAAACAAAAACCGGAAGTGAGAAAACGGCTAGTTGCGGGCGGAAAAGCGCTCACATCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACATTAGCTACTTCAAACGAGGACGAAGGAAGTCGAGCGACAAAAGCAGTTGAGAAAAGAGAGAGAGAAAAGAGTAGGAGTAGGAGAAAAGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAAAGCACAACACCTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTTTAATCAAAAATACCAACGACGAGCACGCGGTATAAATCTCTCGTTCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAACGCGCATCGAGCGCACACAAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATACACTGCTGGCTACCACGAATTCAGATGTGTTCTATACTATTTTACAAAGCGAGAACAGCAGCATACACAGCTGCCCCGCGTGGCAATTGAATCAAGCAAACAGAACAAACAACTGAAAATACTGAAATATCCAAGCAGAAGAACAAAACAATGAAAAGTGAAGAAAACTTGTTGTTATCGTGTAAGTCTTTTGAGAATCTATAGAACATAACACAAACACACATAACTACAACAACAACACATTAAATACTTTAACAATTGTAATAGTGATCATAAAACACATCACTAA] [+] EMBL CNS08G85 [GCGAAGGTGGTGGGGGGTAGCACAACCCCATTTGCTACCGCGCACACCCTTTATAAATTGTATATGTATGAAGAATTGTGGGAGGGCTTGTGGGAGACGGGAAGAATGGTATAGTTTGAAACGGGCGGTGCAAGGCAAACAGTGACAGTTGATGATAGCAAACAAATGAAGTAAATAAGCATGTAACGTGTGATAAGAAAACAAAAACAAAAACCGGAAGTGAGAAAACGGCTAGTTGCGGGCGGAAAAGCGCTCACATCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACATTAGCTACTTCAAACGAGGACGAAGGAAGTCGAGCGACAAAAGCAGTTGAGAAAAGAGAGAGAGAAAAGAGTAGGAGTAGGAGAAAAGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAAAGCACAACACCTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTTTAATCAAAAATACCAACGACGAGCACGCGGTATAAATCTCTCGTTCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAACGCGCATCGAGCGCACACAAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAAC ] [-] EMBL CNS08G86 [ AGTAGGAGTAGGAGAAAAGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATAAAAAAACACACGACCACCGCCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAAAGCACAACACCTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTTTAATCAAAAATACCAACGACGAGCACGCGGTATAAATCTCTCGTTCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAACGCGCATCGAGCGCACACAAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATACACTGCTGGCTACCACGAATTCAGATGTGTTCTATACTATTTTACAAAGCGAGAACAGCAGCATACACAGCTGCCCCGCGTGGCAATTGAATCAAGCAAACAGAACAAACAACTGAAAATACTGAAATATCCAAGCAGAAGAACAAAACAATGAAAAGTGAAGAAAACTTGTTGTTATCGTGTAAGTCTTTTGAGAATCTATAGAACATAACACAAACACACATAACTACAACAACAACACATTAAATACTTTAACAATTGTAATAGTGATCATAAAA ] [-] EMBL CNS08LIK [ ACTAAATTTCGCGTTTGTTTTTTTTATCGTTATTATTTACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATACACTGCTGGCTACCACGAATTCAGATGTGTTCTATACTATTTTACAAAGCGAGAACAGCAGCATACACAGCTGCCCCGCGTGGCAATTGAATCAAGCAAACAGAACAAACAACTGAAAATACTGAAATATCCAAGCAGAAGAACAAAACAATGAAAAGTGAAGAAAACTTGTTGTTATCGTGTAAGTCTTTTGAGAATCTATAGAACATAACACAAACACACATAACTACAACAACAACACATTAAATACTTTAACAATTGTAATAGTGATCATAAAACACATCACTAA] consensusID : consensus_6412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACATTAGCTACTTCAAACGAGGACGAAGGAAGACGAGCGACAAAAGCAGTTGAAAAGAGAGAGAGAAAAGGGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTCTTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACACATTTGAACGCAAAAGTTGTTAGAAAGCACAACACTTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTAACCAAAAACACAAACGACGAGCACGCGGTATTAATCTCTCGTTTCTTATCCCCTTCGCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAGCGCGCATCGAGCGCGCACGAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATA] [+] EMBL BM631866 [CCGCCCACGCGTCCGCCCACGCGTCCGCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACATTAGCTACTTCAAACGAGGACGAAGGAAGACGAGCGACAAAAGCAGTTGAAAAGAGAGAGAGAAAAGGGAAAGTGAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTCTTTTTTTTCCATTGAAAAGCACCACGTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACACATTTGAACGCAAAAGTTGTTAGAAAGCACAACACTTTATCATTCCCCTCTCTTGTGGGGTATGATTTGTTTGTTTTTTTTTTAACCAAAAACACAAACGACGAGCACGCGGTATTAATCTCTCGTTTCTTATCCCCTTCGCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAACAGCGCAAATCTGGCAGCGCGCATCGAGCGCGCACGAAACACCGGTTGTGGTTAAACATTAGTTAATGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAAAAAAAACTAAATGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACGAACAAAACGCAATGAACGAAATCACAATATATCGAAAACAAAAATGTACACCTTACCAATA] consensusID : consensus_6412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [GGCAAGAATCGCCCGAGGNTACAAAGCAGTTGAAAAGAGAGAAAATGAGAGAGAGAGAAGGATAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCATGGATAGAGAAGAGATTGTTTCAGTTCTTTTCCCATTGAAAAGCACCACTGTACACAAGACATATACACACTCACGACCACCACCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAGAGCACAAAACCTTATCATGCGTGCAGTGGCGGATGCACCAACGGTACAGCGCAAATCTGGCAGCGCGCATCTGAGCGCGCACGAAACACCGGTTGTGGTTAAACATTAGCTTAACTGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCCGGAACACANACAAACTAANATGTCGCGGCTNAGAGTTCATCGTTATCATTCACAGCAGAAACGAACGANCGAACAAACACGCANATGAACGAAATCACNNACACTNCTCGAAAACAAAAATGTACACTTTACCAAATACACTGCTGGCTACCACGAATTCCACGATGTGTTCTATACCTATTCTCACACANAGCGACGAACAGCAGCACTACTACGCCTTGCCCCGCTGCTGNG] [+] EMBL AL931860 [GGCAAGAATCGCCCGAGGNTACAAAGCAGTTGAAAAGAGAGAAAATGAGAGAGAGAGAAGGATAGTAGGATGCTAGAACATTGTTTAGTTAAGGATAGTAGAGCCCATGGATAGAGAAGAGATTGTTTCAGTTCTTTTCCCATTGAAAAGCACCACTGTACACAAGACATATACACACTCACGACCACCACCGTTAAAACGCATTCGAACGCAAAAGTTGTTAGAGAGCACAAAACCTTATCATGCGTGCAGTGGCGGATGCACCAACGGTACAGCGCAAATCTGGCAGCGCGCATCTGAGCGCGCACGAAACACCGGTTGTGGTTAAACATTAGCTTAACTGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCCGGAACACANACAAACTAANATGTCGCGGCTNAGAGTTCATCGTTATCATTCACAGCAGAAACGAACGANCGAACAAACACGCANATGAACGAAATCACNNACACTNCTCGAAAACAAAAATGTACACTTTACCAAATACACTGCTGGCTACCACGAATTCCACGATGTGTTCTATACCTATTCTCACACANAGCGACGAACAGCAGCACTACTACGCCTTGCCCCGCTGCTGNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6412#0 GCGAAGGTGGTGGGGGGTAGCACAACCCCATTTGCTACCGCGCACACCCTTTATAAATTG 60 consensus_6412#1 ------------------------------------------------------------ consensus_6412#2 ------------------------------------------------------------ consensus_6412#0 TATATGTATGAAGAATTGTGGGAGGGCTTGTGGGAGACGGGAAGAATGGTATAGTTTGAA 120 consensus_6412#1 ------------------------------------------------------------ consensus_6412#2 ------------------------------------------------------------ consensus_6412#0 ACGGGCGGTGCAAGGCAAACAGTGACAGTTGATGATAGCAAACAAATGAAGTAAATAAGC 180 consensus_6412#1 ------------------------------------------------------------ consensus_6412#2 ------------------------------------------------------------ consensus_6412#0 ATGTAACGTGTGATAAGAAAACAAAAACAAAAACCGGAAGTGAGAAAACGGCTAGTTGCG 240 consensus_6412#1 -----------------------------------------------CCGCCCA--CGCG 11 consensus_6412#2 ------------------------------------------------------------ consensus_6412#0 GGCGGAAAAGCGCTCACATCAAACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACAT 300 consensus_6412#1 TCCGCCCACGCGTCCGCA---AACTTTAGTAGGCAGGGCACAGTTCTTCTACCGGGACAT 68 consensus_6412#2 ------------------------------------------------------------ consensus_6412#0 TAGCTACTTCAAACGAGGACGAAGGAAGTCGAGCGACA-AAAGCAGTTGAGAAAAGAGAG 359 consensus_6412#1 TAGCTACTTCAAACGAGGACGAAGGAAGACGAGCGACA-AAAGCAGTTGA--AAAGAGAG 125 consensus_6412#2 -----------------GGCAAGAATCGCCCGAGGNTACAAAGCAGTTGAAAAGAGAGAA 43 * * * * * * * *********** * ***** consensus_6412#0 AGAGAAAAGAGTAGGAGTAGGAGAAAAGAAAGTGAGTAGGATGCTAGAACATTGTTTAGT 419 consensus_6412#1 AGAGAAAAGGG-----------------AAAGTGAGTAGGATGCTAGAACATTGTTTAGT 168 consensus_6412#2 AATGAGAGAGAGA--------------GAAGGATAGTAGGATGCTAGAACATTGTTTAGT 89 * ** * ** * ************************** consensus_6412#0 TAAGGATAGTAGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTT----TTTTTCCATTGA 475 consensus_6412#1 TAAGGAT---AGAGCCCAAGGATAGAGAAGAGATTGTTTCAGTTCTTTTTTTTCCATTGA 225 consensus_6412#2 TAAGGATAGTAGAGCCCATGGATAGAGAAGAGATTGTTTCAGTTC---TTTTCCCATTGA 146 ******* ******** ************************* **** ******* consensus_6412#0 AAAGCACCAC-GTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACGCAT 534 consensus_6412#1 AAAGCACCAC-GTACACAAGACATATACACACACACACGACCACCGCCGTTAAAACACAT 284 consensus_6412#2 AAAGCACCACTGTACACAAGACATATACACACTCAC--GACCACCACCGTTAAAACGCAT 204 ********** ********************* *** ******* ********** *** consensus_6412#0 TCGAACGCAAAAGTTGTTAGAAAGCACAACACCTTATCATTCCCCTCTCTTGTGGGGTAT 594 consensus_6412#1 TTGAACGCAAAAGTTGTTAGAAAGCACAACACTTTATCATTCCCCTCTCTTGTGGGGTAT 344 consensus_6412#2 TCGAACGCAAAAGTTGTTAGAGAGCACAAAACCTTATCAT-------------------- 244 * ******************* ******* ** ******* consensus_6412#0 GATTTGTTTGTTTTTTTTTTTTAATCAAAAATACCAACGACGAGCACGCGGTATAAATCT 654 consensus_6412#1 GATTTGTTTGTTTTTTTTT--TAACCAAAAACACAAACGACGAGCACGCGGTATTAATCT 402 consensus_6412#2 ------------------------------------------------------------ consensus_6412#0 CTCGTT--------------CATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAA 700 consensus_6412#1 CTCGTTTCTTATCCCCTTCGCATGCGTATGCGCATGCAGTGGCGGATGCACCAACGGTAA 462 consensus_6412#2 ---G----------------------------CGTGCAGTGGCGGATGCACCAACGGTA- 272 * * ************************* consensus_6412#0 CAGCGCAAATCTGGCAACGCGCATC-GAGCGCACACAAAACACCGGTTGTGGTTAAACAT 759 consensus_6412#1 CAGCGCAAATCTGGCAGCGCGCATC-GAGCGCGCACGAAACACCGGTTGTGGTTAAACAT 521 consensus_6412#2 CAGCGCAAATCTGGCAGCGCGCATCTGAGCGCGCACGAAACACCGGTTGTGGTTAAACAT 332 **************** ******** ****** *** *********************** consensus_6412#0 TAGTTAA--TGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAA----AAAA 813 consensus_6412#1 TAGTTAA--TGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCTGAAA----AAAA 575 consensus_6412#2 TAGCTTAACTGTTTTAACTCTATCATTAGTATCGTTTGTCGTATGGCCGGAACACANACA 392 *** * * ************************************** * ** * * consensus_6412#0 AACTAAA-TGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACG 872 consensus_6412#1 AACTAAA-TGTCGCGTTTGTTTGTTTCATCGTTATCATTCACAGCAGAAACGAACGAACG 634 consensus_6412#2 AACTAANATGTCGCGGCTNAGAGTT-CATCGTTATCATTCACAGCAGAAACGAACGANCG 451 ****** ******* * *** ******************************* ** consensus_6412#0 AACAAA-ACGCAA-TGAACGAAATCACAA---TATATCGAAAACAAAAATGTACACCTTA 927 consensus_6412#1 AACAAA-ACGCAA-TGAACGAAATCACAA---TATATCGAAAACAAAAATGTACACCTTA 689 consensus_6412#2 AACAAACACGCANATGAACGAAATCACNNACACTNCTCGAAAACAAAAATGTACACTTTA 511 ****** ***** ************* ******************** *** consensus_6412#0 CCAA-TACACTGCTGGCTACCACGAATTCAGATGTGTTCTATACTATTTTACAAAGCGAG 986 consensus_6412#1 CCAA-TA----------------------------------------------------- 695 consensus_6412#2 CCAAATACACTGCTGGCTACCACGAATTCCACGATGTGTTCTATACCTATTCTCACACAN 571 **** ** consensus_6412#0 AACAGCAGCATACACAGCTGCCCCGCGTGGCAATTGAATCAAGCAAACAGAACAAACAAC 1046 consensus_6412#1 ------------------------------------------------------------ consensus_6412#2 AGCGACGAACAGCAGCACTACTACGCCTTGCCCCGCTGCTGNG----------------- 614 consensus_6412#0 TGAAAATACTGAAATATCCAAGCAGAAGAACAAAACAATGAAAAGTGAAGAAAACTTGTT 1106 consensus_6412#1 ------------------------------------------------------------ consensus_6412#2 ------------------------------------------------------------ consensus_6412#0 GTTATCGTGTAAGTCTTTTGAGAATCTATAGAACATAACACAAACACACATAACTACAAC 1166 consensus_6412#1 ------------------------------------------------------------ consensus_6412#2 ------------------------------------------------------------ consensus_6412#0 AACAACACATTAAATACTTTAACAATTGTAATAGTGATCATAAAACACATCACTAA 1222 consensus_6412#1 -------------------------------------------------------- consensus_6412#2 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||