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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1371 fasta sequence
[CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGGAGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTGACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCAAAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTTTTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAAT-GGGAACGTAAACTGACTGAACTCGATTGGACTTTACTGT-GAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTT-GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGATTTATTGTTGTTGTTGTTATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAACGTCTAAAAAACTGTACGCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTGTTATCGTCCGTTATCGACAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTCTATAGTAAACGGGATCGGGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCAAGCTGTGTAGCGTAGGCTTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAAACCATAGCAGATATAACATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGCGTTAGCGTGTCTTAGGCAAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAAAACAATAATAAAACGTTAAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATCCTCTACAATCCGGAAGGCGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATATAGGAAAGCTGCCGTATGGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA]
[+] EMBL BM620445 [CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGGAGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTGACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCAAAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTTTTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAATGGGGAACGTAAACTGACTGAACTCGATTGGACTTTACTGTGGAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTTGGGCCCCCG ]
[+] EMBL BX624026 [ GCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTGACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCAAAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTTTTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAAT GGGAACGTAAACTGACTGAACTCGATTGGACTTTACTGT GAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTT GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGT ]
[+] EMBL BX613231 [ AGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAAT GGGAACGTAAACTGACTGAACTCGATGGGACTTTACTGT GAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTT GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGG ]
[+] EMBL BX615553 [ CTAACTCCGTAAGGCCGTTT GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGATTTATTGTTGTTGTTGTTATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAACGTCTAAAAAACTGTACGCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTGTTATCGTCCGTTATCGACAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTCTATAGTAAACGGGATCGGGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCAAGCTGTGTAGCGTAGGCTTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAAACCATAGCAGATATAACATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGCGTTAGCGTGTCTTAGGCAAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAAAACAATAATAAAACGTTAAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATCCTCTACAATCCGGAAGGCGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATATAGGAAAGCTGCCGTATGGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA]
consensusID : consensus_6413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence
[CCGAGGTTTGTCTAATGGAACTCATGTTTCTGCTACGCTATAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTATTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTTGTTAAGCGCGTAAAGTTGTATTACGTATAAGTTTATAACAACTGTACGAACTTTAAGCGGGGGCGCGCGTATGTAGGTGTATGTAGTAGGCGTAGGGGAGACAAATGGGAACGTAAACCTGACTGAACTCGATTTGGGACTATATAACTAGTAGAACACCGTGTGTGCACTACTCTAACATACCGTCAAGTGCCGTTTCTGTGGCCCCGTATGGGGAAAGCTNGCTGCGGATGGAACGATACACGGATTCATATAGTCCTGGTTTGGTATGTAGCNAACCGNGATGTTGGCCAATCGCCAAGCGCTTNGGCATTCCCGCGGGTCATTCCCGGCTCATCTCTCACGNNGTTTAACCTANTATACCCCNACAGTCNTTGGGTTGACCGCACTTTCAATTCGGGCCACGGNTAGNGNCACNAGGCTCATCACTCCGGGTTCTCGAAACCTAAACATTGGGGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAAAT]
[+] EMBL AL692321 [CCGAGGTTTGTCTAATGGAACTCATGTTTCTGCTACGCTATAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTATTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTTGTTAAGCGCGTAAAGTTGTATTACGTATAAGTTTATAACAACTGTACGAACTTTAAGCGGGGGCGCGCGTATGTAGGTGTATGTAGTAGGCGTAGGGGAGACAAATGGGAACGTAAACCTGACTGAACTCGATTTGGGACTATATAACTAGTAGAACACCGTGTGTGCACTACTCTAACATACCGTCAAGTGCCGTTTCTGTGGCCCCGTATGGGGAAAGCTNGCTGCGGATGGAACGATACACGGATTCATATAGTCCTGGTTTGGTATGTAGCNAACCGNGATGTTGGCCAATCGCCAAGCGCTTNGGCATTCCCGCGGGTCATTCCCGGCTCATCTCTCACGNNGTTTAACCTANTATACCCCNACAGTCNTTGGGTTGACCGCACTTTCAATTCGGGCCACGGNTAGNGNCACNAGGCTCATCACTCCGGGTTCTCGAAACCTAAACATTGGGGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6413#0 CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGG 60
consensus_6413#1 ------------------------------------------------------------
consensus_6413#0 AGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTG 120
consensus_6413#1 ------------------------------------------------------------
consensus_6413#0 ACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCA 180
consensus_6413#1 ------------------------------------------------------------
consensus_6413#0 AAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTT 240
consensus_6413#1 --------------------------------CCGAGGTTTGTCTAATGGAACTCATGTT 28
* ** ******************
consensus_6413#0 T-TGCTACGCT-TAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGT-TTTTCGAA 297
consensus_6413#1 TCTGCTACGCTATAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTATTTTCGAA 88
* ********* *************************************** ********
consensus_6413#0 CGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGT 357
consensus_6413#1 CGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGT 148
************************************************************
consensus_6413#0 GCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTA 417
consensus_6413#1 GCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTA 208
************************************************************
consensus_6413#0 CGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCAT 477
consensus_6413#1 CGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCAT 268
************************************************************
consensus_6413#0 CGAATCACGAGCGATT-GTTAAGCGCGTAA-GTTGTTTT-CGT-TAAGTTTATAAAACGT 533
consensus_6413#1 CGAATCACGAGCGATTTGTTAAGCGCGTAAAGTTGTATTACGTATAAGTTTATAACAACT 328
**************** ************* ***** ** *** *********** * *
consensus_6413#0 ---CGAACTTTAAG-GGGGGCGCGCGTTTGTGG-----TGTTGTGTGGGT-GGGGAGA-A 582
consensus_6413#1 GTACGAACTTTAAGCGGGGGCGCGCGTATGTAGGTGTATGTAGTAGGCGTAGGGGAGACA 388
*********** ************ *** * *** ** * ** ******* *
consensus_6413#0 AATGGGAACGTAAAC-TGACTGAACTCGATT--GGACTTTACT----GTGAAAC---GTG 632
consensus_6413#1 AATGGGAACGTAAACCTGACTGAACTCGATTTGGGACTATATAACTAGTAGAACACCGTG 448
*************** *************** ***** ** ** *** ***
consensus_6413#0 TGTGC-CTACTCTAACT--CCGTAAGG--CCGTTT----GGCCCCCGTTTGGGAAAGCTG 683
consensus_6413#1 TGTGCACTACTCTAACATACCGTCAAGTGCCGTTTCTGTGGCCCCGTATGGGGAAAGCTN 508
***** ********** **** * * ****** ****** * *********
consensus_6413#0 -CTGCG-ATGGAACGATACACGGATC---ATTGTCCTGGTT-GTTGTGCACGGGGTGCAG 737
consensus_6413#1 GCTGCGGATGGAACGATACACGGATTCATATAGTCCTGGTTTGGTATGTAGCNAACCGNG 568
***** ****************** ** ********* * * ** * *
consensus_6413#0 CAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGATTTATTGTTGTTGTTGT 797
consensus_6413#1 ATGTTGGCCAATCGCCAAGCGCTTNGGCATTCCCGCGGGTCATTCCCGGCTCATCTCTCA 628
**** * * * * **** * * * * *
consensus_6413#0 TATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAACGTCTAAAAAACTGTAC 857
consensus_6413#1 CGNNGTTTAACCTANTATACCCCNACAGTCNTTGGGT--TGACCGCACTTTCAATTCGGG 686
*** *** * * * * ** * * *** ** ** *
consensus_6413#0 GCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTGTTATCGTCCGTTATCGA 917
consensus_6413#1 CCACGGNTAGNGNCACNA-GGCTCATCACTCCGG--GTTCTCGAAACC--TAAACATTGG 741
* * ** * * ** * ** ** * ** * * * * ** *
consensus_6413#0 CAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTCTATAGTAAACGGGATCG 977
consensus_6413#1 -GGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAAAT------------------ 782
*** * ** * * * * ** * * *
consensus_6413#0 GGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCAAGCTGTGTAGCGTAGGC 1037
consensus_6413#1 ------------------------------------------------------------
consensus_6413#0 TTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAAACCATAGCAGATATAAC 1097
consensus_6413#1 ------------------------------------------------------------
consensus_6413#0 ATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGCGTTAGCGTGTCTTAGGC 1157
consensus_6413#1 ------------------------------------------------------------
consensus_6413#0 AAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAAAACAATAATAAAACGTT 1217
consensus_6413#1 ------------------------------------------------------------
consensus_6413#0 AAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATCCTCTACAATCCGGAAGG 1277
consensus_6413#1 ------------------------------------------------------------
consensus_6413#0 CGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATATAGGAAAGCTGCCGTAT 1337
consensus_6413#1 ------------------------------------------------------------
consensus_6413#0 GGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA 1371
consensus_6413#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||