These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1371 fasta sequence [CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGGAGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTGACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCAAAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTTTTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAAT-GGGAACGTAAACTGACTGAACTCGATTGGACTTTACTGT-GAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTT-GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGATTTATTGTTGTTGTTGTTATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAACGTCTAAAAAACTGTACGCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTGTTATCGTCCGTTATCGACAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTCTATAGTAAACGGGATCGGGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCAAGCTGTGTAGCGTAGGCTTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAAACCATAGCAGATATAACATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGCGTTAGCGTGTCTTAGGCAAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAAAACAATAATAAAACGTTAAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATCCTCTACAATCCGGAAGGCGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATATAGGAAAGCTGCCGTATGGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA] [+] EMBL BM620445 [CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGGAGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTGACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCAAAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTTTTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAATGGGGAACGTAAACTGACTGAACTCGATTGGACTTTACTGTGGAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTTGGGCCCCCG ] [+] EMBL BX624026 [ GCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTGACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCAAAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTTTTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAAT GGGAACGTAAACTGACTGAACTCGATTGGACTTTACTGT GAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTT GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGT ] [+] EMBL BX613231 [ AGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAAT GGGAACGTAAACTGACTGAACTCGATGGGACTTTACTGT GAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTT GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGG ] [+] EMBL BX615553 [ CTAACTCCGTAAGGCCGTTT GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGATTTATTGTTGTTGTTGTTATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAACGTCTAAAAAACTGTACGCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTGTTATCGTCCGTTATCGACAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTCTATAGTAAACGGGATCGGGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCAAGCTGTGTAGCGTAGGCTTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAAACCATAGCAGATATAACATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGCGTTAGCGTGTCTTAGGCAAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAAAACAATAATAAAACGTTAAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATCCTCTACAATCCGGAAGGCGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATATAGGAAAGCTGCCGTATGGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA] consensusID : consensus_6413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence [CCGAGGTTTGTCTAATGGAACTCATGTTTCTGCTACGCTATAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTATTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTTGTTAAGCGCGTAAAGTTGTATTACGTATAAGTTTATAACAACTGTACGAACTTTAAGCGGGGGCGCGCGTATGTAGGTGTATGTAGTAGGCGTAGGGGAGACAAATGGGAACGTAAACCTGACTGAACTCGATTTGGGACTATATAACTAGTAGAACACCGTGTGTGCACTACTCTAACATACCGTCAAGTGCCGTTTCTGTGGCCCCGTATGGGGAAAGCTNGCTGCGGATGGAACGATACACGGATTCATATAGTCCTGGTTTGGTATGTAGCNAACCGNGATGTTGGCCAATCGCCAAGCGCTTNGGCATTCCCGCGGGTCATTCCCGGCTCATCTCTCACGNNGTTTAACCTANTATACCCCNACAGTCNTTGGGTTGACCGCACTTTCAATTCGGGCCACGGNTAGNGNCACNAGGCTCATCACTCCGGGTTCTCGAAACCTAAACATTGGGGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAAAT] [+] EMBL AL692321 [CCGAGGTTTGTCTAATGGAACTCATGTTTCTGCTACGCTATAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTATTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTTGTTAAGCGCGTAAAGTTGTATTACGTATAAGTTTATAACAACTGTACGAACTTTAAGCGGGGGCGCGCGTATGTAGGTGTATGTAGTAGGCGTAGGGGAGACAAATGGGAACGTAAACCTGACTGAACTCGATTTGGGACTATATAACTAGTAGAACACCGTGTGTGCACTACTCTAACATACCGTCAAGTGCCGTTTCTGTGGCCCCGTATGGGGAAAGCTNGCTGCGGATGGAACGATACACGGATTCATATAGTCCTGGTTTGGTATGTAGCNAACCGNGATGTTGGCCAATCGCCAAGCGCTTNGGCATTCCCGCGGGTCATTCCCGGCTCATCTCTCACGNNGTTTAACCTANTATACCCCNACAGTCNTTGGGTTGACCGCACTTTCAATTCGGGCCACGGNTAGNGNCACNAGGCTCATCACTCCGGGTTCTCGAAACCTAAACATTGGGGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6413#0 CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGG 60 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 AGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTG 120 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 ACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCA 180 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 AAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTT 240 consensus_6413#1 --------------------------------CCGAGGTTTGTCTAATGGAACTCATGTT 28 * ** ****************** consensus_6413#0 T-TGCTACGCT-TAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGT-TTTTCGAA 297 consensus_6413#1 TCTGCTACGCTATAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTATTTTCGAA 88 * ********* *************************************** ******** consensus_6413#0 CGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGT 357 consensus_6413#1 CGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGT 148 ************************************************************ consensus_6413#0 GCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTA 417 consensus_6413#1 GCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTA 208 ************************************************************ consensus_6413#0 CGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCAT 477 consensus_6413#1 CGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCAT 268 ************************************************************ consensus_6413#0 CGAATCACGAGCGATT-GTTAAGCGCGTAA-GTTGTTTT-CGT-TAAGTTTATAAAACGT 533 consensus_6413#1 CGAATCACGAGCGATTTGTTAAGCGCGTAAAGTTGTATTACGTATAAGTTTATAACAACT 328 **************** ************* ***** ** *** *********** * * consensus_6413#0 ---CGAACTTTAAG-GGGGGCGCGCGTTTGTGG-----TGTTGTGTGGGT-GGGGAGA-A 582 consensus_6413#1 GTACGAACTTTAAGCGGGGGCGCGCGTATGTAGGTGTATGTAGTAGGCGTAGGGGAGACA 388 *********** ************ *** * *** ** * ** ******* * consensus_6413#0 AATGGGAACGTAAAC-TGACTGAACTCGATT--GGACTTTACT----GTGAAAC---GTG 632 consensus_6413#1 AATGGGAACGTAAACCTGACTGAACTCGATTTGGGACTATATAACTAGTAGAACACCGTG 448 *************** *************** ***** ** ** *** *** consensus_6413#0 TGTGC-CTACTCTAACT--CCGTAAGG--CCGTTT----GGCCCCCGTTTGGGAAAGCTG 683 consensus_6413#1 TGTGCACTACTCTAACATACCGTCAAGTGCCGTTTCTGTGGCCCCGTATGGGGAAAGCTN 508 ***** ********** **** * * ****** ****** * ********* consensus_6413#0 -CTGCG-ATGGAACGATACACGGATC---ATTGTCCTGGTT-GTTGTGCACGGGGTGCAG 737 consensus_6413#1 GCTGCGGATGGAACGATACACGGATTCATATAGTCCTGGTTTGGTATGTAGCNAACCGNG 568 ***** ****************** ** ********* * * ** * * consensus_6413#0 CAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGATTTATTGTTGTTGTTGT 797 consensus_6413#1 ATGTTGGCCAATCGCCAAGCGCTTNGGCATTCCCGCGGGTCATTCCCGGCTCATCTCTCA 628 **** * * * * **** * * * * * consensus_6413#0 TATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAACGTCTAAAAAACTGTAC 857 consensus_6413#1 CGNNGTTTAACCTANTATACCCCNACAGTCNTTGGGT--TGACCGCACTTTCAATTCGGG 686 *** *** * * * * ** * * *** ** ** * consensus_6413#0 GCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTGTTATCGTCCGTTATCGA 917 consensus_6413#1 CCACGGNTAGNGNCACNA-GGCTCATCACTCCGG--GTTCTCGAAACC--TAAACATTGG 741 * * ** * * ** * ** ** * ** * * * * ** * consensus_6413#0 CAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTCTATAGTAAACGGGATCG 977 consensus_6413#1 -GGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAAAT------------------ 782 *** * ** * * * * ** * * * consensus_6413#0 GGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCAAGCTGTGTAGCGTAGGC 1037 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 TTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAAACCATAGCAGATATAAC 1097 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 ATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGCGTTAGCGTGTCTTAGGC 1157 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 AAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAAAACAATAATAAAACGTT 1217 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 AAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATCCTCTACAATCCGGAAGG 1277 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 CGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATATAGGAAAGCTGCCGTAT 1337 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 GGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA 1371 consensus_6413#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||