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Anopheles gambiae
cluster # 6413 cluster # 6413       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6413#0 length = 1371 sequences # 4  
consensus_6413#1 length = 782 sequences # 1  

consensusID : consensus_6413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1371
fasta sequence
                              [CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGGAGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTGACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCAAAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTTTTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAAT-GGGAACGTAAACTGACTGAACTCGATTGGACTTTACTGT-GAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTT-GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGATTTATTGTTGTTGTTGTTATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAACGTCTAAAAAACTGTACGCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTGTTATCGTCCGTTATCGACAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTCTATAGTAAACGGGATCGGGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCAAGCTGTGTAGCGTAGGCTTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAAACCATAGCAGATATAACATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGCGTTAGCGTGTCTTAGGCAAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAAAACAATAATAAAACGTTAAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATCCTCTACAATCCGGAAGGCGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATATAGGAAAGCTGCCGTATGGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA]

[+] EMBL BM620445             [CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGGAGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTGACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCAAAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTTTTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAATGGGGAACGTAAACTGACTGAACTCGATTGGACTTTACTGTGGAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTTGGGCCCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX624026             [                                                                                  GCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTGACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCAAAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTTTTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAAT GGGAACGTAAACTGACTGAACTCGATTGGACTTTACTGT GAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTT GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX613231             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTTTAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAAT GGGAACGTAAACTGACTGAACTCGATGGGACTTTACTGT GAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGTTT GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX615553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTAACTCCGTAAGGCCGTTT GGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTGTTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGATTTATTGTTGTTGTTGTTATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAACGTCTAAAAAACTGTACGCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTGTTATCGTCCGTTATCGACAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTCTATAGTAAACGGGATCGGGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCAAGCTGTGTAGCGTAGGCTTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAAACCATAGCAGATATAACATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGCGTTAGCGTGTCTTAGGCAAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAAAACAATAATAAAACGTTAAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATCCTCTACAATCCGGAAGGCGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATATAGGAAAGCTGCCGTATGGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA]


>consensus_6413#0 CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGG AGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTG ACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCA AAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTT TTGCTACGCTTAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTTTTTCGAACGA CTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCA AAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGC AAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGA ATCACGAGCGATTGTTAAGCGCGTAAGTTGTTTTCGTTAAGTTTATAAAACGTCGAACTT TAAGGGGGGCGCGCGTTTGTGGTGTTGTGTGGGTGGGGAGAAAATGGGAACGTAAACTGA CTGAACTCGATTGGACTTTACTGTGAAACGTGTGTGCCTACTCTAACTCCGTAAGGCCGT TTGGCCCCCGTTTGGGAAAGCTGCTGCGATGGAACGATACACGGATCATTGTCCTGGTTG TTGTGCACGGGGTGCAGCAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGA TTTATTGTTGTTGTTGTTATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAA CGTCTAAAAAACTGTACGCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTG TTATCGTCCGTTATCGACAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTC TATAGTAAACGGGATCGGGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCA AGCTGTGTAGCGTAGGCTTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAA ACCATAGCAGATATAACATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGC GTTAGCGTGTCTTAGGCAAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAA AACAATAATAAAACGTTAAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATC CTCTACAATCCGGAAGGCGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATA TAGGAAAGCTGCCGTATGGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA



consensusID : consensus_6413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence
                              [CCGAGGTTTGTCTAATGGAACTCATGTTTCTGCTACGCTATAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTATTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTTGTTAAGCGCGTAAAGTTGTATTACGTATAAGTTTATAACAACTGTACGAACTTTAAGCGGGGGCGCGCGTATGTAGGTGTATGTAGTAGGCGTAGGGGAGACAAATGGGAACGTAAACCTGACTGAACTCGATTTGGGACTATATAACTAGTAGAACACCGTGTGTGCACTACTCTAACATACCGTCAAGTGCCGTTTCTGTGGCCCCGTATGGGGAAAGCTNGCTGCGGATGGAACGATACACGGATTCATATAGTCCTGGTTTGGTATGTAGCNAACCGNGATGTTGGCCAATCGCCAAGCGCTTNGGCATTCCCGCGGGTCATTCCCGGCTCATCTCTCACGNNGTTTAACCTANTATACCCCNACAGTCNTTGGGTTGACCGCACTTTCAATTCGGGCCACGGNTAGNGNCACNAGGCTCATCACTCCGGGTTCTCGAAACCTAAACATTGGGGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAAAT]

[+] EMBL AL692321             [CCGAGGTTTGTCTAATGGAACTCATGTTTCTGCTACGCTATAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTATTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTTGTTAAGCGCGTAAAGTTGTATTACGTATAAGTTTATAACAACTGTACGAACTTTAAGCGGGGGCGCGCGTATGTAGGTGTATGTAGTAGGCGTAGGGGAGACAAATGGGAACGTAAACCTGACTGAACTCGATTTGGGACTATATAACTAGTAGAACACCGTGTGTGCACTACTCTAACATACCGTCAAGTGCCGTTTCTGTGGCCCCGTATGGGGAAAGCTNGCTGCGGATGGAACGATACACGGATTCATATAGTCCTGGTTTGGTATGTAGCNAACCGNGATGTTGGCCAATCGCCAAGCGCTTNGGCATTCCCGCGGGTCATTCCCGGCTCATCTCTCACGNNGTTTAACCTANTATACCCCNACAGTCNTTGGGTTGACCGCACTTTCAATTCGGGCCACGGNTAGNGNCACNAGGCTCATCACTCCGGGTTCTCGAAACCTAAACATTGGGGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAAAT]


>consensus_6413#1 CCGAGGTTTGTCTAATGGAACTCATGTTTCTGCTACGCTATAAGTTAAGGTTGTTAGGAA GTGTGTGTGCGTTTGTTGTATTTTCGAACGACTTTTCCTTTGGCTTGTTTTTTTTTCACC TCAACAACCCGGTGAATAGTGGCTGCGTGCAAAACAAGACACCACTACCATACCTGAAGA AAAAGTGCAATTGGATATTACTTCCGTACGCAAACGAAATCCAATCAATCATTCCCATTG CCGGACGACTTGTTTTTCTTACTAGCATCGAATCACGAGCGATTTGTTAAGCGCGTAAAG TTGTATTACGTATAAGTTTATAACAACTGTACGAACTTTAAGCGGGGGCGCGCGTATGTA GGTGTATGTAGTAGGCGTAGGGGAGACAAATGGGAACGTAAACCTGACTGAACTCGATTT GGGACTATATAACTAGTAGAACACCGTGTGTGCACTACTCTAACATACCGTCAAGTGCCG TTTCTGTGGCCCCGTATGGGGAAAGCTNGCTGCGGATGGAACGATACACGGATTCATATA GTCCTGGTTTGGTATGTAGCNAACCGNGATGTTGGCCAATCGCCAAGCGCTTNGGCATTC CCGCGGGTCATTCCCGGCTCATCTCTCACGNNGTTTAACCTANTATACCCCNACAGTCNT TGGGTTGACCGCACTTTCAATTCGGGCCACGGNTAGNGNCACNAGGCTCATCACTCCGGG TTCTCGAAACCTAAACATTGGGGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAA AT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6413#0      CCGAGCAGCTTAACCTGCGCTCCGAGCAGCGCGAATCCGACACGTACATGATGGACGAGG 60
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      AGCTCGTCAGCCCGCTGGTCGTGCTGTTCAAGTACAGCGAAATCAACCTGGAGGAGATTG 120
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      ACTTGCCGCCGGAGCTGAATCTGGAGGGTTTGGTTACCAAGATCTAGACTTAATTGCGCA 180
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      AAAGCGACTACTTACTGTTAGAAAAAAGGGGAGCTCCTTTGCTCTAATGGAACTCATGTT 240
consensus_6413#1      --------------------------------CCGAGGTTTGTCTAATGGAACTCATGTT 28
                                                       *    **  ******************

consensus_6413#0      T-TGCTACGCT-TAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGT-TTTTCGAA 297
consensus_6413#1      TCTGCTACGCTATAAGTTAAGGTTGTTAGGAAGTGTGTGTGCGTTTGTTGTATTTTCGAA 88
                      * ********* *************************************** ********

consensus_6413#0      CGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGT 357
consensus_6413#1      CGACTTTTCCTTTGGCTTGTTTTTTTTTCACCTCAACAACCCGGTGAATAGTGGCTGCGT 148
                      ************************************************************

consensus_6413#0      GCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTA 417
consensus_6413#1      GCAAAACAAGACACCACTACCATACCTGAAGAAAAAGTGCAATTGGATATTACTTCCGTA 208
                      ************************************************************

consensus_6413#0      CGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCAT 477
consensus_6413#1      CGCAAACGAAATCCAATCAATCATTCCCATTGCCGGACGACTTGTTTTTCTTACTAGCAT 268
                      ************************************************************

consensus_6413#0      CGAATCACGAGCGATT-GTTAAGCGCGTAA-GTTGTTTT-CGT-TAAGTTTATAAAACGT 533
consensus_6413#1      CGAATCACGAGCGATTTGTTAAGCGCGTAAAGTTGTATTACGTATAAGTTTATAACAACT 328
                      **************** ************* ***** ** *** *********** *  *

consensus_6413#0      ---CGAACTTTAAG-GGGGGCGCGCGTTTGTGG-----TGTTGTGTGGGT-GGGGAGA-A 582
consensus_6413#1      GTACGAACTTTAAGCGGGGGCGCGCGTATGTAGGTGTATGTAGTAGGCGTAGGGGAGACA 388
                         *********** ************ *** *     *** **  * ** ******* *

consensus_6413#0      AATGGGAACGTAAAC-TGACTGAACTCGATT--GGACTTTACT----GTGAAAC---GTG 632
consensus_6413#1      AATGGGAACGTAAACCTGACTGAACTCGATTTGGGACTATATAACTAGTAGAACACCGTG 448
                      *************** ***************  ***** **      **  ***   ***

consensus_6413#0      TGTGC-CTACTCTAACT--CCGTAAGG--CCGTTT----GGCCCCCGTTTGGGAAAGCTG 683
consensus_6413#1      TGTGCACTACTCTAACATACCGTCAAGTGCCGTTTCTGTGGCCCCGTATGGGGAAAGCTN 508
                      ***** **********   **** * *  ******    ******   * ********* 

consensus_6413#0      -CTGCG-ATGGAACGATACACGGATC---ATTGTCCTGGTT-GTTGTGCACGGGGTGCAG 737
consensus_6413#1      GCTGCGGATGGAACGATACACGGATTCATATAGTCCTGGTTTGGTATGTAGCNAACCGNG 568
                       ***** ******************    ** ********* * * ** *         *

consensus_6413#0      CAGTTGATCGGTATCGTTTTAAGTTACTTTTCCAATTGTGAGATTTATTGTTGTTGTTGT 797
consensus_6413#1      ATGTTGGCCAATCGCCAAGCGCTTNGGCATTCCCGCGGGTCATTCCCGGCTCATCTCTCA 628
                        ****  *  *  *        *     ****    *     *      *  *   *  

consensus_6413#0      TATTGTTGAACTAATTGGATGGGAAAAGCCGGGAAGAAATGAACGTCTAAAAAACTGTAC 857
consensus_6413#1      CGNNGTTTAACCTANTATACCCCNACAGTCNTTGGGT--TGACCGCACTTTCAATTCGGG 686
                          *** ***  * *  *     * ** *     *   *** **       ** *    

consensus_6413#0      GCTTGCAAAGCATTTCAATAACTTAACATACCTGCGCTTTTTGTTATCGTCCGTTATCGA 917
consensus_6413#1      CCACGGNTAGNGNCACNA-GGCTCATCACTCCGG--GTTCTCGAAACC--TAAACATTGG 741
                       *  *   **     * *   ** * **  ** *   ** * *  * *       ** * 

consensus_6413#0      CAGACGAAGTGGCAACTCGCATATTAGTCAAACGGTGGAGTTCTATAGTAAACGGGATCG 977
consensus_6413#1      -GGACTTGGGGGACAAACAAGGCCCNGGCNGACAACGAAAAT------------------ 782
                        ***   * **  *  *        * *  **   * *  *                  

consensus_6413#0      GGGGAGAAATAAGCATTATATTTACATCAATGTACATCCAGCAAGCTGTGTAGCGTAGGC 1037
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      TTTAGCAGTAGTCTATTATCCACACAGTAAAGGATGGATTAAAACCATAGCAGATATAAC 1097
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      ATACTTACATATTACATCTGAACTAGAACGAGAACTTAGTAGCGTTAGCGTGTCTTAGGC 1157
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      AAAGTGTCGCGATCGCGCATGATCGTGCAGAATGATAAAAAAAAACAATAATAAAACGTT 1217
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      AAATGAATTGTATTGAAATTTGGAGGGGTTTATAAAGCGAATCCTCTACAATCCGGAAGG 1277
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      CGTAGATCATTAATCTTATTTGAACTATCTAGACCGACCAATATAGGAAAGCTGCCGTAT 1337
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      GGAAACGGCGGACGCGCGTGTGTTTCAGAGAGAA 1371
consensus_6413#1      ----------------------------------
                                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)