These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1172 fasta sequence [CTGTTTGAGTTTGCAACTGATTGAAGACGAAAAAAAAAACAAATGCAAATCGCCAGTGTGAGTGAGTGTACAAAATAAAAGAAAAGAAAATTAACAACCAAGCGCGCCTATCAGCCAACGATGCGATGGTGAGTGGGGTGAAAAAAGTGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAAATGTTCCCTTCTCCCGCCCGCAATCAACGAGTGAGATTTGTTTGCGCATTGTTGTTCAACATTAATCAGCGCAATTCACCGAACGCCAGCAGTTGGCCATGAGTGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAG-CGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGTGTTAACGGATTGGCGTCCCTTGTACCGTGCTACACATCCTTGCCCTGTTTGTGTGTATTTTCCGTGAAAAGAAAAGAAAAGGAAAATTTAGAAGGCAATGTTTTAAGCATGTGGACAATTGTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCATCTGGCATGTGATGAAGAATTGTATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTAGATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCCATTTTGCTCCGACAAAAACGAACTAGCATTGCGATAGAATTTACAAAGAAAGCATCAGCAACCTACCCAACCGGAACAATGTACACCGGAAAGGCGAAAATATAATGATGTAAATGCAACGCGGTGTATCAAAAGGTGCAAAATACTGCAATGAAAGCACTTGCAGTTATGCCACCTGATCCACACCCACAGCACAAGGAGCGTCACCTTCGACAACGAGACATCAAACAAGCGCAGCTAATAATTCGATCCCTTTATCCAACGAGCCAATTATTTGTGCAGGGATAGGAAGGAAAAATCAGAAAAAGGTATGTCGCCACTCGCTCGGTGTATTCATCGTTAAAAATCGATCTGGATTTAACGGGACGGGACTGCTAACTTGACTCGAATAAAAGACTCGTCCCAG] [+] EMBL CNS094F3 [CTGTTTGAGTTTGCAACTGATTGAAGACGAAAAAAAAAACAAATGCAAATCGCCAGTGTGAGTGAGTGTACAAAATAAAAGAAAAGAAAATTAACAACCAAGCGCGCCTATCAGCCAACGATGCGATGGTGAGTGGGGTGAAAAAAGTGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAAATGTTCCCTTCTCCCGCCCGCAATCAACGAGTGAGATTTGTTTGCGCATTGTTGTTCAACATTAATCAGCGCAATTCACCGAACGCCAGCAGTTGGCCATGAGTGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAG CGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGTGTTAACGGATTGGCGTCCCTTGTACCGTGCTACACATCCTTGCCCTGTTTGTGTGTATTTTCCGTGAAAAGAAAAGAAAAGGAAAATTTAGAAGGCAATGTTTTAAGCATGTGGACAATTGTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCATCTGGCATGTGATGAAGAATTGTATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTAGATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCAATTTTGCTCCGA ] [+] EMBL CNS094OE [ GCGCGCCTATCAGCCAACGATGCGATGGTGAGTGGGGTGAAAAAAGTGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAAATGTTCCCTTCTCCCGCCCGCAATCAACGAGTGAGATTTGTTTGCGCATTGTTGTTCAACATTAATCAGCGCAATTCACCGAACGCCAGCAGTTGGCCATGAGTGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAGTCGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGTGTTAACGGATTGGCGTCCCTTGTACCGTGCTACACATCCTTGCCCTGTTTGTGTGTATTTTCCGTGAAAAGAAAAGAAAAGGAATTTTTAGAAGGCAATGTTTTAAGCATGTGGACAATTGTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCATCTGGCATGTGATGAAGAATTGTATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTAGATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCCATTTTGCTCCGACAAAAACGAACTAGCATTGCGATAGAATTTACAAAGAAAGCATCAGCAACCTACCCAACCGGAACAATGTACACCGGAAAGGCGAAAATATAATGATGTAAATGCAACGCGGTGTATCAAAAGGTGCAAAATACTGCAATGAA ] [-] EMBL CNS094OF [ GCCAGCAGTTGGCCATGAGTGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAG CGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGTGTTAACGGATTGGCGTCCCTTGTACCGTGCTAAACATCCTTGCCCTGTTTGTGTGTATTTTCCGTGAAAAGAAAAGAAAAGGAAAATTTAGAAGGCAATGTTTTAAGCATGTGGACAATTGTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCCTCTGGCATGTGATGGAGga ] [-] EMBL CNS094F4 [ CGGAATGTTTGACTCGATGAAGTTATCGCAATCAGAATGGATTCTGGATTTAGGACTGAGACATCCTCTGGCATGTGATGAAGAATTGTATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTAGATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCCATTTTGCTCCGACAAAAACGAACTAGCATTGCGATAGAATTTATAAAGAAAGCATCAGCAACCTACCCAACCGGAACAATGTACCCCGGAAAGGCGAAAATATAATGATGTAAATGCAACGCGGTGTATCAAAAGGTGCAAAATACTGCAATGAAAGCACTTGCAGTTATGCCACCTGATCCACACCCACAGCACAAGGAGCGTCACCTTCGACAACGAGACATCAAACAAGCGCAGCTAATAATTCGATCCCTTTATCCAACGAGCCAATTATTTGTGCAGGGATAGGAAGGAAAAATCAGAAAAAGGTATGTCGCCACTCGCTCGGTGTATTCATCGTTAAAAATCGATCTGGATTTAACGGGACGGGACTGCTAACTTGACTCGAATAAAAGACTCGTCCCAG] consensusID : consensus_6417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence [CCATTTCCGTGTCACCGAACACGTGGTGTTTAATTAATTGTTTATGTTTGCAAAAGTGTTGAGAGCCGCGTTGAAGAAGTTGAATACCAAAAAAACCGAAGGAAACGAACCGTGCCGCAGCAAACAAAACTTAACGGATCGCTGTTTATCAGTTTTGCTCGGGGTCGGGCTTTGGCCATAACAACCAAGTCTGGCGACGGCGGATAGCAAGAAAAGTGATTGAAAAGTGAAATCAAACGACACGGAAATCGATCAAGCGTGACCAATTGTTTTTATCTCCTTCATTTTTAGTGTGTTTTTGTCCATCTGTTCGAGTTTGCAACTGATTGGAGACGGAAAAAAACAAATGCAAATCGCCAGTGTGAGTGAGTGTACAAAAAAAATGAAAATTAACAACCAAGTGCGGTGAGTGAGGTGGAAAAAGCGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAATTGTTCCCTTCTCCCGCCCGCAATCAACGAGTGTGATTTGTTTGCGCACCGTAGTTCAACATTAATCAGCGCAAATCGCCGAACGCCAGCAGTTGGCCATGAGCGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAGCGAGAAAGCATAGCAGCAGCAGCACGTGTTAGTGAAGAAGGTATTAACGAATTGGCGCCACTTTTACCGTGCTACACATCCTTGTCCTGTTTGTTTGTATT] [+] EMBL BX608630 [CCATTTCCGTGTCACCGAACACGTGGTGTTTAATTAATTGTTTATGTTTGCAAAAGTGTTGAGAGCCGCGTTGAAGAAGTTGAATACCAAAAAAACCGAAGGAAACGAACCGTGCCGCAGCAAACAAAACTTAACGGATCGCTGTTTATCAGTTTTGCTCGGGGTCGGGCTTTGGCCATAACAACCAAGTCTGGCGACGGCGGATAGCAAGAAAAGTGATTGAAAAGTGAAATCAAACGACACGGAAATCGATCAAGCGTGACCAATTGTTTTTATCTCCTTCATTTTTAGTGTGTTTTTGTCCATCTGTTCGAGTTTGCAACTGATTGGAGACGGAAAAAAACAAATGCAAATCGCCAGTGTGAGTGAGTGTACAAAAAAAATGAAAATTAACAACCAAGTGCGGTGAGTGAGGTGGAAAAAGCGAGAAAAGTGTTATGAATTTGTATCGTCGGAGGAAAATTGTTCCCTTCTCCCGCCCGCAATCAACGAGTGTGATTTGTTTGCGCACCGTAGTTCAACATTAATCAGCGCAAATCGCCGAACGCCAGCAGTTGGCCATGAGCGGCGGGAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTACGATTTCAGCGAGAAAGCATAGCAGCAGCAGCACGTGTTAGTGAAGAAGGTATTAACGAATTGGCGCCACTTTTACCGTGCTACACATCCTTGTCCTGTTTGTTTGTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6417#0 ------------------------------------------------------------ consensus_6417#1 CCATTTCCGTGTCACCGAACACGTGGTGTTTAATTAATTGTTTATGTTTGCAAAAGTGTT 60 consensus_6417#0 ------------------------------------------------------------ consensus_6417#1 GAGAGCCGCGTTGAAGAAGTTGAATACCAAAAAAACCGAAGGAAACGAACCGTGCCGCAG 120 consensus_6417#0 ------------------------------------------------------------ consensus_6417#1 CAAACAAAACTTAACGGATCGCTGTTTATCAGTTTTGCTCGGGGTCGGGCTTTGGCCATA 180 consensus_6417#0 ------------------------------------------------------------ consensus_6417#1 ACAACCAAGTCTGGCGACGGCGGATAGCAAGAAAAGTGATTGAAAAGTGAAATCAAACGA 240 consensus_6417#0 ------------------------------------------------------------ consensus_6417#1 CACGGAAATCGATCAAGCGTGACCAATTGTTTTTATCTCCTTCATTTTTAGTGTGTTTTT 300 consensus_6417#0 ------CTGTTTGAGTTTGCAACTGATTGAAGACGAAAAAAAAAACAAATGCAAATCGCC 54 consensus_6417#1 GTCCATCTGTTCGAGTTTGCAACTGATTGGAGACGGAAAAAA--ACAAATGCAAATCGCC 358 ***** ***************** ***** ****** **************** consensus_6417#0 AGTGTGAGTGAGTGTACAAAATAAAAGAAAAGAAAATTAACAACCAAGCGCGCCTATCAG 114 consensus_6417#1 AGTGTGAGTGAGTGTACAAAA-----AAAATGAAAATTAACAACCAAGTGCG-------- 405 ********************* *** ***************** *** consensus_6417#0 CCAACGATGCGATGGTGAGTGGGGTGAAAAAAGTGAGAAAAGTGTTATGAATTTGTATCG 174 consensus_6417#1 --------------GTGAGTGAGGTGGAAAAAGCGAGAAAAGTGTTATGAATTTGTATCG 451 ******* **** ****** ************************** consensus_6417#0 TCGGAGGAAAAATGTTCCCTTCTCCCGCCCGCAATCAACGAGTGAGATTTGTTTGCGCAT 234 consensus_6417#1 TCGGAGGAAAATTGTTCCCTTCTCCCGCCCGCAATCAACGAGTGTGATTTGTTTGCGCAC 511 *********** ******************************** ************** consensus_6417#0 TGTTGTTCAACATTAATCAGCGCAATTCACCGAACGCCAGCAGTTGGCCATGAGTGGCGG 294 consensus_6417#1 CGTAGTTCAACATTAATCAGCGCAAATCGCCGAACGCCAGCAGTTGGCCATGAGCGGCGG 571 ** ********************* ** ************************* ***** consensus_6417#0 GAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTA 354 consensus_6417#1 GAAAATTGTCGCCGGAATGAAACAGTTTGATCGCGAACCCTGCCCGATCCAGTGTGTGTA 631 ************************************************************ consensus_6417#0 CGATTTCAGCGAGAAAGCATAGCAGCAGCAGCACTAGCAGCACGTGTTACTGAAGAAGGT 414 consensus_6417#1 CGATTTCAGCGAGAAAGCATAGCAGCAGCA---------GCACGTGTTAGTGAAGAAGGT 682 ****************************** ********** ********** consensus_6417#0 GTTAACGGATTGGCGTCCCTTGTACCGTGCTACACATCCTTGCCCTGTTTGTGTGTATTT 474 consensus_6417#1 ATTAACGAATTGGCGCCACTTTTACCGTGCTACACATCCTTGTCCTGTTTGTTTGTATT- 741 ****** ******* * *** ******************** ********* ****** consensus_6417#0 TCCGTGAAAAGAAAAGAAAAGGAAAATTTAGAAGGCAATGTTTTAAGCATGTGGACAATT 534 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GTTTATTGGACTGTAAAACCCTGTATGTCATCGGAATGTTTGACTCGATGAAGTTATCGC 594 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 AATCAGAATGGATTCTGGATTTAGGACTGAGACATCATCTGGCATGTGATGAAGAATTGT 654 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 ATCACAAAATAACATAGAAAAACTAAAAACTACACAGCACAAAAGTAAGAAACGGAAGTA 714 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GATTTCAACCCAGATCGTATCACAATGCTCTTAACATGGAAGGAATATTTCCATTTTGCT 774 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 CCGACAAAAACGAACTAGCATTGCGATAGAATTTACAAAGAAAGCATCAGCAACCTACCC 834 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 AACCGGAACAATGTACACCGGAAAGGCGAAAATATAATGATGTAAATGCAACGCGGTGTA 894 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 TCAAAAGGTGCAAAATACTGCAATGAAAGCACTTGCAGTTATGCCACCTGATCCACACCC 954 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 ACAGCACAAGGAGCGTCACCTTCGACAACGAGACATCAAACAAGCGCAGCTAATAATTCG 1014 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 ATCCCTTTATCCAACGAGCCAATTATTTGTGCAGGGATAGGAAGGAAAAATCAGAAAAAG 1074 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GTATGTCGCCACTCGCTCGGTGTATTCATCGTTAAAAATCGATCTGGATTTAACGGGACG 1134 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GGACTGCTAACTTGACTCGAATAAAAGACTCGTCCCAG 1172 consensus_6417#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||