These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1367 fasta sequence [CACGGATGAGGGGGGAGACTGTGCTGAGCATGGCAACGCAAAGACCGACGACAAGGCAGAAGGCAAATCTCAACGTCCCACTGCAGCAACTGCCTTACAGGATGCGGATAGGGGCCAAATTCAGCAGCCGGCCGATGCTGACGTAATGGTGGCAGTACAGCAAGACACGGCCGAGCCGGAACAAGCTTCCTGCGTTCAAGCTACGGCCAGTTGCGCAGATCCATCTACCTCAGCGGATCCATTGCCAGCGGTGGACGGGAGCAAGCCCGCCCTGACACCGATGGAGATTCGCTACCAGGTGTACGAATCGGAACGCCAGATGCCCGCCATCATGGCGCTCATTCAGAAGGATCTGTCCGAGCCGTACTCGATCTACACCTACCGCTATTTCATACACAACTGGCCAAAGCTGTGCTTTCTGGCGCTGCACCGGGACACTTGCGTCGGTGCGATCGTCTGCAAGCTGGACATTCACCGGCAGGAGACGCGCCGCGGCTACATCGCAATGCTGGCAGTGGACAAGGACTATCGGAAGCTAAAAATCGGCACCACGCTCGTGCAGAAAGCAATACAGGCTATGGTGGAGGACCACGCCGATGAGGTGGTGTTGGAGACGGAAATCACGAACCAACCGGCACTGCGGTTGTACGAAAATCTGGGCTTTGTGCGAGACAAGCGGCTGTTTCACTACTACCTTAACGGTGTCGACGCGTTACGACTGAAGCTGTGGTTCAGATGAGCGCAGCTGTACCCCTACCAAACCTAGATGTCCTTTTGTTTCGTTTGTATCGAAGATAAGACGGAATGTCGCGATGCCCCAGGTAAC-AAGGCAACAGTCCTCAATAAACGCCGGCCAAGATTAGCGACGGGGACGGGGAAAGGGACCGTTGCCAATTTTGAATGTGTGCAAAAAGCTAGTGAATCAAAATGGCCAGCATGCTGAAGCCAGTACGAGCTGTAACGGATACTCATACGTTTTGTACTATGCTATGCGCTCGCAGTTGCGTGATATTTCAAATGGAATGGGCATTAATAGATATCAGCTAAATGTTTTGCAAACAAAACGTTTCTCCTGCCACCCATTTTCCTTGCACAACCAAATACTGAACCTAGACTGGAACAATATTTAATCGGTTTCCCCTGCCCCTCCGAGAGGAATTGAAATGGTTTAGGTCCTTATGAAGCGATCGAATGTAACACAAGGCAGCATAGGTCAATATTTATGGGAACAGTTCACTGTGCACGCGGTTGCTCATTGTTCTTGTGCACAGTTTTGTTTTTATGTTCCTCTTCACCCGAGCGTAACCATCATTAGAAGATTTTGGATTCTTGGTCAGCTTCAGGGTCCGCTTTCACACTGTATAACT] [+] EMBL BX624658 [CACGGATGAGGGGGGAGACTGTGCTGAGCATGGCAACGCAAAGACCGACGACAAGGCAGAAGGCAAATCTCAACGTCCCACTGCAGCAACTGCCTTACAGGATGCGGATAGGGGCCAAATTCAGCAGCCGGCCGATGCTGACGTAATGGTGGCAGTACAGCAAGACACGGCCGAGCCGGAACAAGCTTCCTGCGTTCAAGCTACGGCCAGTTGCGCAGATCCATCTACCTCAGCGGATCCATTGCCAGCGGTGGACGGGAGCAAGCCCGCCCTGACACCGATGGAGATTCGCTACCAGGTGTACGAATCGGAACGCCAGATGCCCGCCATCATGGCGCTCATTCAGAAGGATCTGTCCGAGCCGTACTCGATCTACACCTACCGCTATTTCATACACAACTGGCCAAAGCTGTGCTTTCTGGCGCTGCACCGGGACACTTGCGTCGGTGCGATCGTCTGCAAGCTGGACATTCACCGGCAGGAGACGCGCCGCGGCTACATTGCAATGCTGGCAGTGGACAAGGACTATCGGAAGCTAAAAATCGGCACCACGCTCGTGCAGAAAGCAATACAGGCTATGGTGGAGGACCACGCCGATGAGGTGGTGTTGGAGACGGAAATCACGAACCAACCGGCACTGCGGTTGTACGAAAATCTGGGCTTTGTGCGAGACAAGCGGCTGNTTCACTACTACCTTAACGGTGTCGACGCGTTACGACTGAAGCTGTGGNTCANATGAGCGCAGCTGTACCCCTACCAAA ] [+] EMBL BX607714 [ GCAAGACACGGCCGAGCCGGAACAAGCTTCCTGCGTTCAAGCTACGGCCAGTTGCGCAGATCCATCTACCTCAGCGGATCCATTGCCAGCGGTGGACGGGAGCAAGCCCGCCCTGACACCGATGGAGATTCGCTACCAGGTGTACGAATCGGAACGCCAGATGCCCGCCATCATGGCGCTCATTCAGAAGGATCTGTCCGAGCCGTACTCGATCTACACCTACCGCTATTTCATACACAACTGGCCAAAGCTGTGCTTTCTGGCGCTGCACCGGGACACTTGCGTCGGTGCGATCGTCTGCAAGCTGGACATTCACCGGCAGGAGACGCGCCGCGGCTACATCGCAATGCTGGCAGTGGACAAGGACTATCGGAAGCTAAAAATCGGCACCACGCTCGTGCAGAAAGCAATACAGGCTATGGTGGAGGACCACGCCGATGAGGTGGTGTTGGAGACGGAAATCACGAACCAACCGGCACTGCGGTTGTACGAAAATCTGGGCTTTGTGCGAGACAAGCGGCTGTTTCACTACTACCTTAACGGTGTCGACGCGTTACGACTGAAGCTGTGGTTCAGATGAGCGCAGCTGTACCCCTACCAAACCTAGATGTCCTTTTGTTTCGTTTGTATCGAAGATAAGACGGAATGTCGCGATGCCCAAAGTAAC TAGGCAAC ] [+] EMBL BM654999 [ ccgTGCGTCGGTGCGATCGTCTGCAAGCTGGACATTCACCGGCAGGAGACGCGCCGCGGCTACATCGCAATGCTGGCAGTGGACAAGGACTATCGGAAGCTAAAAATCGGCACCACGCTCGTGCAAAAAGCAATACAGGCTATGGTGGAGGACCACGCCGATGAGGTGGTGTTGGAGACGGAAATCACGAACCAACCGGCACTGCGGTTGTACGAAAATCTGGGCTTTGTGCGAGACAAGCGGCTGTTTCACTACTACCTTAACGGTGTCGACGCGTTACGACTGAAGCTGTGGTTCAGATGAGCGCAGCTGTACCCCTACCAAACCTAGATGTCCTTTTGTTTCGTTTGTATCGAAGATAAGACGGAATGTCGCGATGCCCCAGGTAACAAAGGCAACAGTCCTCAATAAACGCC ] [+] EMBL BM581003 [ ccgGCGGCTGTTTCACTACTACCTTAACGGTGTCGACGCGTTACGACTGAAGCTGTGGTTCAGATGAGCGCAGCTGTACCCCTACCAAACCTAGATGTCCTTTTGTTTCGTTTGTATCGAAGATAAGACGGAATGTCGCGATGCCCCAGGTAACAAAGGCAACAGTCCTCAATAAACGCCGGCCAAGATTAGCGACGGGGACGGGGAAAGGGACCGTTGCCAATTTTGAATGTGTGCAAAAAGCTAGTGAATCAAAATGGCCAGCATGCTGAAGCCAGTACGAGCTGTAACGGATACTCATACGTTTTGTACTATGCTATGCGCTCGCAGTTGCGTGATATTTCAAATGGAATGGGCATTAATAGATATCAGCTAAATGTTTTGCAAACAAAACGTTTCTCCTGCCACCCATTTTCCTTGCACAACCAAATACTGAACCTAGACTGGAACAATATTTAATCGGTTTCCCCTGCCCCTCCGAGAGGAATTGAAATGGTTTAGGTCCTTATGAAGCGATCGAATGTAACACAAGGCAGCATAGGTCAATATTTATGGGAACAGTTCACTGTGCACGCGGTTGCTCATTGTTCTTGTGCACAGTTTTGTTTTTATGTTCCTCTTCACCCGAGCGTAACCATCATTAGAAGATTTTGGATTCTTGGTCAGCTTCAGGGTCCGCTTTCACACTGTATAACT] consensusID : consensus_6419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [ATCGCCGAGGTNGCGGCCAGATTAGCGACGGGGACGGGGAAAGGGACCGTTGCCAATTTTGAATGTGTGCAAAAAGCTAGTGAATCAAAATGGCCAGCATGCTGAAGCCAGTACGAGCTGTAACGGATACTCATACGTTTTGTACTATGCTATGCGCTCGCAGTTGCGTGATATTTCAAATGGAATGGGCATTAATAGATATCAGCTAAATGTTTTGCAAACAAAACGTTTCTCCTGCCACCCATTTTCCTTGCACAACCAAATACTGAACCTAGACTGGAACAATATTTAATCGGTTTCCCCTGGCCCCTCCGAGAGGAATTGAAATGGTTTAGGTCCTTATGAAGCGATCGAATGTAACACAAGGCAGCATAGGTCAATATTTATGGGAACAGTTCACTGTGCACGCGGTTGCTCATTGTTCTTGTGCTCTAGTTTTGTTTTTATGTTCCTCTTCACCCGA] [+] EMBL AL931834 [ATCGCCGAGGTNGCGGCCAGATTAGCGACGGGGACGGGGAAAGGGACCGTTGCCAATTTTGAATGTGTGCAAAAAGCTAGTGAATCAAAATGGCCAGCATGCTGAAGCCAGTACGAGCTGTAACGGATACTCATACGTTTTGTACTATGCTATGCGCTCGCAGTTGCGTGATATTTCAAATGGAATGGGCATTAATAGATATCAGCTAAATGTTTTGCAAACAAAACGTTTCTCCTGCCACCCATTTTCCTTGCACAACCAAATACTGAACCTAGACTGGAACAATATTTAATCGGTTTCCCCTGGCCCCTCCGAGAGGAATTGAAATGGTTTAGGTCCTTATGAAGCGATCGAATGTAACACAAGGCAGCATAGGTCAATATTTATGGGAACAGTTCACTGTGCACGCGGTTGCTCATTGTTCTTGTGCTCTAGTTTTGTTTTTATGTTCCTCTTCACCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6419#0 CACGGATGAGGGGGGAGACTGTGCTGAGCATGGCAACGCAAAGACCGACGACAAGGCAGA 60 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 AGGCAAATCTCAACGTCCCACTGCAGCAACTGCCTTACAGGATGCGGATAGGGGCCAAAT 120 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 TCAGCAGCCGGCCGATGCTGACGTAATGGTGGCAGTACAGCAAGACACGGCCGAGCCGGA 180 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 ACAAGCTTCCTGCGTTCAAGCTACGGCCAGTTGCGCAGATCCATCTACCTCAGCGGATCC 240 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 ATTGCCAGCGGTGGACGGGAGCAAGCCCGCCCTGACACCGATGGAGATTCGCTACCAGGT 300 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 GTACGAATCGGAACGCCAGATGCCCGCCATCATGGCGCTCATTCAGAAGGATCTGTCCGA 360 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 GCCGTACTCGATCTACACCTACCGCTATTTCATACACAACTGGCCAAAGCTGTGCTTTCT 420 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 GGCGCTGCACCGGGACACTTGCGTCGGTGCGATCGTCTGCAAGCTGGACATTCACCGGCA 480 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 GGAGACGCGCCGCGGCTACATCGCAATGCTGGCAGTGGACAAGGACTATCGGAAGCTAAA 540 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 AATCGGCACCACGCTCGTGCAGAAAGCAATACAGGCTATGGTGGAGGACCACGCCGATGA 600 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 GGTGGTGTTGGAGACGGAAATCACGAACCAACCGGCACTGCGGTTGTACGAAAATCTGGG 660 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 CTTTGTGCGAGACAAGCGGCTGTTTCACTACTACCTTAACGGTGTCGACGCGTTACGACT 720 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 GAAGCTGTGGTTCAGATGAGCGCAGCTGTACCCCTACCAAACCTAGATGTCCTTTTGTTT 780 consensus_6419#1 ------------------------------------------------------------ consensus_6419#0 CGTTTGTATCGAAGATAAGACGGAATGTCGCGATGCCCCAGGTAACAAGGCAACAGTCCT 840 consensus_6419#1 -------------------------------------------------------ATCGC 5 ** consensus_6419#0 CAATAAACGCCGGCCAAGATTAGCGACGGGGACGGGGAAAGGGACCGTTGCCAATTTTGA 900 consensus_6419#1 CGA--GGTNGCGGCCA-GATTAGCGACGGGGACGGGGAAAGGGACCGTTGCCAATTTTGA 62 * * ****** ******************************************* consensus_6419#0 ATGTGTGCAAAAAGCTAGTGAATCAAAATGGCCAGCATGCTGAAGCCAGTACGAGCTGTA 960 consensus_6419#1 ATGTGTGCAAAAAGCTAGTGAATCAAAATGGCCAGCATGCTGAAGCCAGTACGAGCTGTA 122 ************************************************************ consensus_6419#0 ACGGATACTCATACGTTTTGTACTATGCTATGCGCTCGCAGTTGCGTGATATTTCAAATG 1020 consensus_6419#1 ACGGATACTCATACGTTTTGTACTATGCTATGCGCTCGCAGTTGCGTGATATTTCAAATG 182 ************************************************************ consensus_6419#0 GAATGGGCATTAATAGATATCAGCTAAATGTTTTGCAAACAAAACGTTTCTCCTGCCACC 1080 consensus_6419#1 GAATGGGCATTAATAGATATCAGCTAAATGTTTTGCAAACAAAACGTTTCTCCTGCCACC 242 ************************************************************ consensus_6419#0 CATTTTCCTTGCACAACCAAATACTGAACCTAGACTGGAACAATATTTAATCGGTTTCCC 1140 consensus_6419#1 CATTTTCCTTGCACAACCAAATACTGAACCTAGACTGGAACAATATTTAATCGGTTTCCC 302 ************************************************************ consensus_6419#0 CTG-CCCCTCCGAGAGGAATTGAAATGGTTTAGGTCCTTATGAAGCGATCGAATGTAACA 1199 consensus_6419#1 CTGGCCCCTCCGAGAGGAATTGAAATGGTTTAGGTCCTTATGAAGCGATCGAATGTAACA 362 *** ******************************************************** consensus_6419#0 CAAGGCAGCATAGGTCAATATTTATGGGAACAGTTCACTGTGCACGCGGTTGCTCATTGT 1259 consensus_6419#1 CAAGGCAGCATAGGTCAATATTTATGGGAACAGTTCACTGTGCACGCGGTTGCTCATTGT 422 ************************************************************ consensus_6419#0 TCTTGTGCAC-AGTTTTGTTTTTATGTTCCTCTTCACCCGAGCGTAACCATCATTAGAAG 1318 consensus_6419#1 TCTTGTGCTCTAGTTTTGTTTTTATGTTCCTCTTCACCCGA------------------- 463 ******** * ****************************** consensus_6419#0 ATTTTGGATTCTTGGTCAGCTTCAGGGTCCGCTTTCACACTGTATAACT 1367 consensus_6419#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||