cluster # 6420

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Anopheles gambiae
cluster # 6420 cluster # 6420 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6420#0 length = 997 sequences # 4

consensus_6420#1 length = 494 sequences # 1

consensusID : consensus_6420#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 997
fasta sequence

                              [CGACCCACGCGTCCGATGATGGATATGAAATCGATGGGATCTATTTACTATGAAAACTTTGCGTTCCCGGGTATGGTCCCGTTCAAGCGATCCGCCGGTGAAAAGTCCGGCATTCCCGTCTACCAGCCGGGCGCCACCTACCAGCAGCTGATGCAACTACAGCAGCCGTTCGTGCCAGTGTCATCTCCATCGGCAAACATGCCCCTGAACGCACCGTACGTCGTGTACACCGATTCGAATGGACAGTTACTGGACACCCTCCCGGTGTGCCAAGATTTTAATAGATCGATGTGCACGCGTCCGACCTGTAGATTCGTTCATCTAATGGAGTGTGATAAAGTAGAAGTATGTGATCAGCGTGTGGCGGTCTGTCGTGATCATGCGAAGGGAATGTGTAAGCGGAAACAGTGTAAATATTATCACATACCGATAGTACTGCCACCGGCGAACGTGATGGCCGCCACAGCGAAGCTAGCCGAGAATCTATGAGTGTACCCAGCCGAGACCGAAACCACGGGAGAAGGAGCAGCAGCAGCAGTAGGAGCGGTAGAAAAGAACCCGAACGAACATTGCGAACGGACGTAAACGACGGACGGATGACTCTCTCGAGAGAGAGAGGATGTAGGGAGCGCTTGTGGTAGTGTTGGCATCATCAACTCTTGCCCACGGAGCAACACAGCCGTCTACAGAACGAAGCAGCCGCGGAGTGCACACCCATCAATCATCGAATGCAACACAGCAGCAACCCCTCATCAATGATTAAAATGCCATCCAAAACCGGGAGGAGGATAGTGTGGAGAGTAGCGAAAGAGATGCCCGCGCGGTCAGAGTAGTAACGCGTGCGCGTAGTGTAGTCGAGCAGTTTTGCGTACCATTTTCGAGCAGTTTGTATGTGTCTGTGTGTTACATTAGTAGAGTTAGCAGCGGGAAG-CGATGCGCGGTTCACTTCCCAACACTTCCACCCAATGCGAACCGTTTAAAGAAGATCCCGTTTCAA]

[+] EMBL BM619051             [CGACCCACGCGTCCGATGATGGATATGAAATCGATGGGATCTATTTACTATGAAAACTTTGCGTTCCCGGGTATGGTCCCGTTCAAGCGATCCGCCGGTGAAAAGTCCGGCATTCCCGTCTACCAGCCGGGCGCCACCTACCAGCAGCTGATGCAACTACAGCAGCCGTTCGTGCCAGTGTCATCTCCATCGGCAAACATGCCCCTGAACGCACCGTACGTCGTGTACACCGATTCGAATGGACAGTTACTGGACACCCTCCCGGTGTGCCAAGATTTTAATAGATCGATGTGCACGCGTCCGACCTGTAGATTCGTTCATCTAATGGAGTGTGATAAAGTAGAAGTATGTGATCAGCGTGTGGCGGTCTGTCGTGATCATGCGAAGGGAATGTGTAAGCGGAAACAGTGTAAATATTATCACATACCGATAGTACTGCCACCGGCGAACGTGATGGCCGCCACAGCGAAGCTAGCCGAGAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM583043             [                                                                                                                                                                                                                                                                               ccGATTTTAATAGATCGATGTGCACGCGTCCGACCTGTAGATTCGTTCATCTAATGGAGTGTGATAAAGTAGAAGTATGTGATCAGCGTGTGGCGGTCTGTCGTGATCATGCGAAGGGAATGTGTAAGCGGAAACAGTGTAAATATTATCACATACCGATAGTACTGCCACCGGCGAACGTGATGGCCGCCACAGCGAAGCTAGCCGAGAATCTATGAGTGTACCCAGCCGAGACCGAAACCACGGGAGAAGGAGCAGCAGCAGCAGTAGGAGCGGTAGAAAAGAACCCGAACGAACATTGCGAACGGACGTAAACGACGGACGGATGACTCTCTCGAGAGAGAGAGGATGTAGGGAGCGCTTGTGGTAGTGTTGGCATCATCAACTCTTGCCCACGGAGCAACACAGCCGTCTACAGAACGAAGCAGCCGCGGAGTGCACACCCATCAATCATCGAATGCAACACAGCAGCAACCCCTCATCAATGATTAAAATGCCATCCAAAACCGGGAGGAGGATAGTGTGGAGAGTAGCGAAAGAGATGCCCGCGCGGTCAGAGTAGTAACGCGTGCGCGTAGTGTAGTCGAGCAGTTTTGCGTACCATTTTCGAGCAGTTTGTATGTGTCTGTGTGTTACATTAGTAGAGTTAGCAGCGGGAAG CGATGCGCGGTTCACTTCCCAACACTTCCACCCAATGCGAAC                        ]
[+] EMBL BM601600             [                                                                                                                                                                                                                                                                                                                            ccgATCTAATGGAGTGTGATAAAGTAGAAGTATGTGATCAGCGTGTGGCGGTCTGTCGTGATCATGCGAAGGGAATGTGTAAGCGGAAACAGTGTAAATATTATCACATACCGATAGTACTGCCACCGGCGAACGTGATGGCCGCCACAGCGAAGCTAGCCGAGAATCTATGAGTGTACCCAGCCGAGACCGAAACCACGGGAGAAGGAGCAGCAGCAGCAGTAGGAGCGGTAGAAAAGAACCCGAACGAACATTGCGAACGGACGTAAACGACGGACGGATGACTCTCTCGAGAGAGAGAGGATGTAGGGAGCGCTTGTGGTAGTGTTGGCATCATCAACTCTTGCCCACGGAGCAACACAGCCGTCTACAGAACGAAGCAGCCGCGGAGTGCACACCCATCAATCATCGAATGCAACACAGCAGCAACCCCTCATCAATGATTAAAATGCCATCCAAAACCGGGAGGAGGATAGTGTGGAGAGTAGCGAAAGAGATGCCCGCGCGGTCAGAGTAGTAACGCGTGCGCGTAGTGTAGTCGAGCAGTTTTGCGTACCATTTTCGAGCAGTTTGTATGTGTCTGTGTGTTACATTAGTAGAGTTAGCAGCGGGAAG CGA                                                               ]
[+] EMBL BM646247             [                                                                                                                                                                                                                                                                                                                                                                                    ccgGATCATGCGAAGGGAATGTGTAAGCGGAAACAGTGTAAATATTATCACATACCGATAGTACTGCCACCGGCGAACGTGATGGCCGCCACAGCGAAGCTAGCCGAGAATCTATGAGTGTACCCAGCCGAGACCGAAACCACGGGAGAAGGAGCAGCAGCAGCAGTAGGAGCGGTAGAAAAGAACCCGAACGAACATTGCGAACGGACGTAAACGACGGACGGATGACTCTCTCGAGAGAGAGAGGATGTAGGGAGCGCTTGTGGTAGTGTTGGCATCATCAACTCTTGCCCACGGAGCAACACAGCCGTCTACAGAACGAAGCAGCCGCGGAGTGCACACCCATCAATCATCGAATGCAACACAGCAGCAACCCCTCATCAATGATTAAAATGCCATCCAAAACCGGGAGGAGGATAGTGTGGAGAGTAGCGAAAGAGATGCCCGCGCGGTCAGAGTAGTAACGCGTGCGCGTAGTGTAGTCGAGCAGTTTTGCGTACCATTTTCGAGCAGTTTGTATGTGTCTGTGTGTTACATTAGTAGAGTTAGCAGCGGGAAGCCGATGCGCGGTTCACTTCCCAACACTTCCACCCAATGCGAACCGTTTAAAGAAGATCCCGTTTCAA]




>consensus_6420#0
CGACCCACGCGTCCGATGATGGATATGAAATCGATGGGATCTATTTACTATGAAAACTTT
GCGTTCCCGGGTATGGTCCCGTTCAAGCGATCCGCCGGTGAAAAGTCCGGCATTCCCGTC
TACCAGCCGGGCGCCACCTACCAGCAGCTGATGCAACTACAGCAGCCGTTCGTGCCAGTG
TCATCTCCATCGGCAAACATGCCCCTGAACGCACCGTACGTCGTGTACACCGATTCGAAT
GGACAGTTACTGGACACCCTCCCGGTGTGCCAAGATTTTAATAGATCGATGTGCACGCGT
CCGACCTGTAGATTCGTTCATCTAATGGAGTGTGATAAAGTAGAAGTATGTGATCAGCGT
GTGGCGGTCTGTCGTGATCATGCGAAGGGAATGTGTAAGCGGAAACAGTGTAAATATTAT
CACATACCGATAGTACTGCCACCGGCGAACGTGATGGCCGCCACAGCGAAGCTAGCCGAG
AATCTATGAGTGTACCCAGCCGAGACCGAAACCACGGGAGAAGGAGCAGCAGCAGCAGTA
GGAGCGGTAGAAAAGAACCCGAACGAACATTGCGAACGGACGTAAACGACGGACGGATGA
CTCTCTCGAGAGAGAGAGGATGTAGGGAGCGCTTGTGGTAGTGTTGGCATCATCAACTCT
TGCCCACGGAGCAACACAGCCGTCTACAGAACGAAGCAGCCGCGGAGTGCACACCCATCA
ATCATCGAATGCAACACAGCAGCAACCCCTCATCAATGATTAAAATGCCATCCAAAACCG
GGAGGAGGATAGTGTGGAGAGTAGCGAAAGAGATGCCCGCGCGGTCAGAGTAGTAACGCG
TGCGCGTAGTGTAGTCGAGCAGTTTTGCGTACCATTTTCGAGCAGTTTGTATGTGTCTGT
GTGTTACATTAGTAGAGTTAGCAGCGGGAAGCGATGCGCGGTTCACTTCCCAACACTTCC
ACCCAATGCGAACCGTTTAAAGAAGATCCCGTTTCAA

consensusID : consensus_6420#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [GCAGAATCGGCNNGAGGCGTTAACGACGGACGGATGACTCTCGCCAGAGAGGGTGTAGGGAGCGCTTGTGTAGTGTTGGCGTCCTCAACTCTTGGCCAACGGAGCAACACAGCCGTCTACAGAACGATGCAGCCGCGGAGGGCACACCCATCAATCATCGAATGCAACAGCAGCAGCAAACCCTCATCAATGATTAAAATGCCATCCAAACCGGGAGGAGGATAGGTGTGGAGAGTAGCGAAAGAGATGCCCGCGCCGTCAGAGGTAGGTAACGCGTGCGCGTAGTTGTAGGTCGAGCAGTTTTGCGTACCATTTTCGAGCAGTTTGTATGTGTCTGTGTGTTACAGTTAGTAGACGTTAGCAGCGGGAAGCGATGCGCGGTTCACTACCCAACTTCCACCCAATGCGAACCTTTTTAAAGAAGATCCCGTTTTCAACGGGCCCCCGGATAGTGTACGGAGAGGGCCCGGGTAGNATTTGCTGCAGGAAAGTAT]

[+] EMBL BX468622             [GCAGAATCGGCNNGAGGCGTTAACGACGGACGGATGACTCTCGCCAGAGAGGGTGTAGGGAGCGCTTGTGTAGTGTTGGCGTCCTCAACTCTTGGCCAACGGAGCAACACAGCCGTCTACAGAACGATGCAGCCGCGGAGGGCACACCCATCAATCATCGAATGCAACAGCAGCAGCAAACCCTCATCAATGATTAAAATGCCATCCAAACCGGGAGGAGGATAGGTGTGGAGAGTAGCGAAAGAGATGCCCGCGCCGTCAGAGGTAGGTAACGCGTGCGCGTAGTTGTAGGTCGAGCAGTTTTGCGTACCATTTTCGAGCAGTTTGTATGTGTCTGTGTGTTACAGTTAGTAGACGTTAGCAGCGGGAAGCGATGCGCGGTTCACTACCCAACTTCCACCCAATGCGAACCTTTTTAAAGAAGATCCCGTTTTCAACGGGCCCCCGGATAGTGTACGGAGAGGGCCCGGGTAGNATTTGCTGCAGGAAAGTAT]




>consensus_6420#1
GCAGAATCGGCNNGAGGCGTTAACGACGGACGGATGACTCTCGCCAGAGAGGGTGTAGGG
AGCGCTTGTGTAGTGTTGGCGTCCTCAACTCTTGGCCAACGGAGCAACACAGCCGTCTAC
AGAACGATGCAGCCGCGGAGGGCACACCCATCAATCATCGAATGCAACAGCAGCAGCAAA
CCCTCATCAATGATTAAAATGCCATCCAAACCGGGAGGAGGATAGGTGTGGAGAGTAGCG
AAAGAGATGCCCGCGCCGTCAGAGGTAGGTAACGCGTGCGCGTAGTTGTAGGTCGAGCAG
TTTTGCGTACCATTTTCGAGCAGTTTGTATGTGTCTGTGTGTTACAGTTAGTAGACGTTA
GCAGCGGGAAGCGATGCGCGGTTCACTACCCAACTTCCACCCAATGCGAACCTTTTTAAA
GAAGATCCCGTTTTCAACGGGCCCCCGGATAGTGTACGGAGAGGGCCCGGGTAGNATTTG
CTGCAGGAAAGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6420#0      CGACCCACGCGTCCGATGATGGATATGAAATCGATGGGATCTATTTACTATGAAAACTTT 60
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GCGTTCCCGGGTATGGTCCCGTTCAAGCGATCCGCCGGTGAAAAGTCCGGCATTCCCGTC 120
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      TACCAGCCGGGCGCCACCTACCAGCAGCTGATGCAACTACAGCAGCCGTTCGTGCCAGTG 180
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      TCATCTCCATCGGCAAACATGCCCCTGAACGCACCGTACGTCGTGTACACCGATTCGAAT 240
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GGACAGTTACTGGACACCCTCCCGGTGTGCCAAGATTTTAATAGATCGATGTGCACGCGT 300
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      CCGACCTGTAGATTCGTTCATCTAATGGAGTGTGATAAAGTAGAAGTATGTGATCAGCGT 360
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GTGGCGGTCTGTCGTGATCATGCGAAGGGAATGTGTAAGCGGAAACAGTGTAAATATTAT 420
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      CACATACCGATAGTACTGCCACCGGCGAACGTGATGGCCGCCACAGCGAAGCTAGCCGAG 480
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      AATCTATGAGTGTACCCAGCCGAGACCGAAACCACGGGAGAAGGAGCAGCAGCAGCAGTA 540
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GGAGCGGTAGAAAAGAACCCGAACGAACATTGCGAACGGACGTAAACGACGGACGGATGA 600
consensus_6420#1      ----------------------GCAGA-ATCGGCNNGAGGCGTTAACGACGGACGGATGA 37
                                             *  * ** *      * *** ****************

consensus_6420#0      CTCTCTCGAGAGAGAGAGGATGTAGGGAGCGCTTGTGGTAGTGTTGGCATCATCAACTCT 660
consensus_6420#1      CTCTCGCCAGAGAG----GGTGTAGGGAGCGCTTGTG-TAGTGTTGGCGTCCTCAACTCT 92
                      ***** * ******    * ***************** ********** ** ********

consensus_6420#0      TGCCCA-CGGAGCAACACAGCCGTCTACAGAACGAAGCAGCCGCGGAGTGCACACCCATC 719
consensus_6420#1      TGGCCAACGGAGCAACACAGCCGTCTACAGAACGATGCAGCCGCGGAGGGCACACCCATC 152
                      ** *** **************************** ************ ***********

consensus_6420#0      AATCATCGAATGCAACA-CAGCAGCAACCCCTCATCAATGATTAAAATGCCATCCAAAAC 778
consensus_6420#1      AATCATCGAATGCAACAGCAGCAGCAAACCCTCATCAATGATTAAAATGCCATCCAAA-C 211
                      ***************** ********* ****************************** *

consensus_6420#0      CGGGAGGAGGATAG-TGTGGAGAGTAGCGAAAGAGATGCCCGCGCGGTCAGAGT--AGTA 835
consensus_6420#1      CGGGAGGAGGATAGGTGTGGAGAGTAGCGAAAGAGATGCCCGCGCCGTCAGAGGTAGGTA 271
                      ************** ****************************** *******    ***

consensus_6420#0      ACGCGTGCGCGTAGT-GTAG-TCGAGCAGTTTTGCGTACCATTTTCGAGCAGTTTGTATG 893
consensus_6420#1      ACGCGTGCGCGTAGTTGTAGGTCGAGCAGTTTTGCGTACCATTTTCGAGCAGTTTGTATG 331
                      *************** **** ***************************************

consensus_6420#0      TGTCTGTGTGTTACA-TTAGTAGA-GTTAGCAGCGGGAAGCGATGCGCGGTTCACTTCCC 951
consensus_6420#1      TGTCTGTGTGTTACAGTTAGTAGACGTTAGCAGCGGGAAGCGATGCGCGGTTCACTACCC 391
                      *************** ******** ******************************* ***

consensus_6420#0      AACACTTCCACCCAATGCGAACCGTTT-AAAGAAGATCCCGTTTCAA------------- 997
consensus_6420#1      AA--CTTCCACCCAATGCGAACCTTTTTAAAGAAGATCCCGTTTTCAACGGGCCCCCGGA 449
                      **  ******************* *** ****************  *             

consensus_6420#0      ---------------------------------------------
consensus_6420#1      TAGTGTACGGAGAGGGCCCGGGTAGNATTTGCTGCAGGAAAGTAT 494