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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 888 fasta sequence
[ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTTTTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATTTGTACCACCTGGGCGTATGTATGC-TAAGTTC-GCTTTTATCCCTATTATACCGTCATTTTATGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACTGTGGGTAGATGTATTTCAGTTCTGGCATGTATGGT--GGCAACACCAGGGGAAGAACGATAGGAT-TAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTT-TAAAATA-ATGCGTAAATATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAAATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATAAGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAATATTAAAATGTAAAATGTA]
[+] EMBL BX609298 [ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTTTTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATTTGTACCACCTGGGCGTATGTATGC TAAGTTC GCTTTTATCCCTATTATACCGTCATTTTATGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACTGTGGGTAGATGTATTTCAGTTCTGGCATGTATGGT GGCAACACCAGGGGAAGAACGATAGGAT TAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTT TAAAATA ATGCGTAAATATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAAATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATAAGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCA ]
[+] EMBL BX624334 [ acgtaGGGCGTATGTATGCNTAAGTACAGCTTTTATCCCTGTAATACCGTCATTTTATGGGTAGCACACAAGCGATATGTTAAAC GAGAGACACGAGCAGAGCCAGTTTAAAACTGTGGGTAGATATATTTCAGTTCAGGCATGTATGGTAGGGCAACACCAGGGGAAGAACGATAGGATAGGACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTTATAAAATANATGCGTAAATATGCGGCGGTTCAGCTTCTCGTCTCGTTTGTGAAGGATATTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGC ACTCTCCCTGCCACAATACCAGCAATGGCTGCGGATGAAGCATGGCTGTTAGTNAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATCAGCAGTNAANTTt ]
[+] EMBL BX625310 [ AGAGCCAGTTTAAAACTGTGGGTAGATGTATTTCAGTTCTGGCATGTATGGT GGCAACACCAGGGGAAGAACGATAGGAT TAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTT TAAAATA ATGCGTAAATATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGGCTCCCTGCCAAAATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATAAGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAATATTAAAATGTAAAATGTA]
consensusID : consensus_6421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[GAAACTTTATCATTTTAAAATAATGCGTAAATATGCGGTGGTTCAGCTTCCTGTCTCGTTTGTCAAGGATATTCTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGTATGCTAGGAGAAGAAAGCACTTACACACACACAAACCACTATTTTTAGCGGTGGAGAAAGACGGTGATTGTCTTAAACAAAAGGATAGTAGTAACAACACTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTGTACCCTGTATTGTGTCAAAAAAACTGCTCGCGGACGATTAATATTAAAATGTAAAATGTGTGCCCCGCGCGGAGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA]
[+] EMBL CNS09LEQ [GAAACTTTATCATTTTAAAATAATGCGTAAATATGCGGTGGTTCAGCTTCCTGTCTCGTTTGTCAAGGATATTCTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGTATGCTAGGAGAAGAAAGCACTTACACACACACAAACCACTATTTTTAGCGGTGGAGAAAGACGGTGATTGTCTTAAACAAAAGGATAGTAGTAACAACACTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTGTACCCTGTATTGTGTCAAAAAAACTGCTCGCGGACGATTAATATTAAAATGTAAAATGTGTGCCCCGCGCGGAGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA]
consensusID : consensus_6421#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[CAGATCGCCACGAGNNTCAATGGCAGGCTCCCTGCCAAAACTACGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACGACACACAAACCACGTATTTTTAGCGGTGGGATAAGACGGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAAGTATTNAAAAGTGTAAAATGTATGCCCCGTGAGGGAGGGCAGGATTGTTCTCACGCGCGCGCGGCT]
[+] EMBL BX469014 [CAGATCGCCACGAGNNTCAATGGCAGGCTCCCTGCCAAAACTACGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACGACACACAAACCACGTATTTTTAGCGGTGGGATAAGACGGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAAGTATTNAAAAGTGTAAAATGTATGCCCCGTGAGGGAGGGCAGGATTGTTCTCACGCGCGCGCGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6421#0 ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTT 60
consensus_6421#2 ------------------------------------------------------------
consensus_6421#1 ------------------------------------------------------------
consensus_6421#0 TTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATT 120
consensus_6421#2 ------------------------------------------------------------
consensus_6421#1 ------------------------------------------------------------
consensus_6421#0 TGTACCACCTGGGCGTATGTATGCTAAGTTCGCTTTTATCCCTATTATACCGTCATTTTA 180
consensus_6421#2 ------------------------------------------------------------
consensus_6421#1 ------------------------------------------------------------
consensus_6421#0 TGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACT 240
consensus_6421#2 ------------------------------------------------------------
consensus_6421#1 ------------------------------------------------------------
consensus_6421#0 GTGGGTAGATGTATTTCAGTTCTGGCATGTATGGTGGCAACACCAGGGGAAGAACGATAG 300
consensus_6421#2 ------------------------------------------------------------
consensus_6421#1 ------------------------------------------------------------
consensus_6421#0 GATTAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTTTAAAATAATGCGTAAAT 360
consensus_6421#2 ------------------------------------------------------------
consensus_6421#1 ----------------------------GAAACTTTATCATTTTAAAATAATGCGTAAAT 32
consensus_6421#0 ATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTA 420
consensus_6421#2 ------------------------------------------------------------
consensus_6421#1 ATGCGGTGGTTCAGCTTCCTGTCTCGTTTGTCAAGGATATTCTTTTT-CCGAGTGCGCTA 91
consensus_6421#0 GTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAA 480
consensus_6421#2 ------------------CAGATCGCCACGAGNNT--CAATGGCAGG-CTCCCTGCCAAA 39
consensus_6421#1 GTGTACTCACTTTTAAGCTAGAACAAAACAAGGCT------------------------- 126
*** * ** ** *
consensus_6421#0 ATACCGGCAATGGCTGCG-GATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCA 539
consensus_6421#2 ACTACGGCAATGGCTGCG-GATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCA 98
consensus_6421#1 -----AACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTCA 181
*********** ******* *********************************
consensus_6421#0 TACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTA 599
consensus_6421#2 TACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTA 158
consensus_6421#1 TACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGTA 241
************* ******************************************* **
consensus_6421#0 TGCTAGGAGAAGAAAGCACTTACACACAC-ACACACAAACCAC-TATTTTTAGCGGTGGG 657
consensus_6421#2 TGCTAGGAGAAGAAAGCACTTACACACACGACACACAAACCACGTATTTTTAGCGGTGGG 218
consensus_6421#1 TGCTAGGAGAAGAAAGCACTTACACACAC-----ACAAACCAC-TATTTTTAGCGGTGGA 295
***************************** ********* ***************
consensus_6421#0 ATAAGACGG-TGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCAC 716
consensus_6421#2 ATAAGACGGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCAC 278
consensus_6421#1 GAAAGACGG-TGATTGTCTTAAACAAAA--GGATAGTAGTAACAACACTTGATTTATCAC 352
******* ******* ********** **************** ************
consensus_6421#0 GCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTT 776
consensus_6421#2 GCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTT 338
consensus_6421#1 GCCTTGATCATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTT 412
************************* ********************* ** *********
consensus_6421#0 TAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTAC-AC-CCCTG 834
consensus_6421#2 TAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTAC-AC-CCCTG 396
consensus_6421#1 TAATGTGGAATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTG 472
********************************* ***** *********** ** *****
consensus_6421#0 -----TGTATTGTGTCAAAAAA-CCGTTCGCGGACGATTAA-TATTAAAA--TGTAAAAT 885
consensus_6421#2 G----TGTATTGTGTCAAAAAA-CCGTTCGCGGACGATTAAGTATTNAAAAGTGTAAAAT 451
consensus_6421#1 TACCCTGTATTGTGTCAAAAAAACTGCTCGCGGACGATTAA-TATTAAAA--TGTAAAAT 529
***************** * * ************** **** *** ********
consensus_6421#0 GTA------------------------------------------------- 888
consensus_6421#2 GTATGCCCCGTGAGGGAGGGCAGGATTGTTCTCACGCGCGCGCGGCT----- 498
consensus_6421#1 GTGTGCCCCGCGCGG-AGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA 580
**
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||