cluster # 6422

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Anopheles gambiae
cluster # 6422 cluster # 6422 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6422#0 length = 871 sequences # 4

consensus_6422#1 length = 666 sequences # 1

consensusID : consensus_6422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 871
fasta sequence

                              [CCGCGGACGCGTGGGCGGACAGCAACGAATTTAGAACATGGAGAAACGAAAAGACTCACTTAGGATAATCGCACAAGCGCTGAGCAGCTACCGTG-CCGAGGAGATGTTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCAAACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGCGAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTGGACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCCTGCATCATGGGGTCCCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAAACGGACCCGGGGTGGCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAAGACATCTGGAGCTACATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGCTACACTTCGATCGGCGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCGGACAGCAGTGGGGAAGAAGTGACTTACCTGCCGGCGTACACGTTGCATGACGCGGACAAGTATGAGCGGGCGGGCCGGCTCTAACACCCCCTTCCGGTGCCCCGTGGTGCCTTTTGGTATGGCTTCGAGGAGGAAAAGACATAATTAAGCTGCCCTCCACGACAAAGCAGCGTG-AAGATAAGGGCTGGTCGTCCCTTGTATCGCTTGAACGGGTGAAATTTATGGCTGNTGCTTAGCAACATGACACTTACACACTAACACACTTACACTTACACTTTCCTTTAT]

[+] EMBL BM614938             [CCGCGGACGCGTGGGCGGACAGCAACGAATTTAGAACATGGAGAAACGAAAAGACTCACTTAGGATAATCGCACAAGCGCTGAGCAGCTACCGTG CCGAGGAGATGTTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCAAACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGCGAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTGGACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCCTGCATCATGGGGTCCCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAAACGGACCCGGGGTGGCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAAGACATCTGGAGCTACATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGCTACACTTCGATCGGCGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCGGACAGCAGTGGGGAAGAAGTGACTTACCTGCCGGCGTACACGTTGCATG                                                                                                                                                                                                                                             ]
[+] EMBL BX625976             [                        ACGAATTTAGAACATGGAGAAACGAAAAGACTCACTTAGGATAATCGCACAAGCGCTGAGCAGCTACCGTG CCGAGGAGATGTTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCAAACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGCGAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTGGACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCCTGCATCATGGGGTCCCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAAACGGACCCGGGGTGGCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAAGACATCTGGAGCTACATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGCTACACTTCGATCGGCGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCGGACAGCAGTGGGGAAGAAGTGACTTACCTGCCGGCGTACACGTTGCATGACGCGGACAAGTATGAGCGGGCGGGCCGGCTCTAACACCCCCTTCCGGTGCCCCGTGGTGCCTTTTGGTATGGCTTCGAGGAGGAAAAGACATAATTAAGCTGCCCTCCACGACAAAGCAGCGTG AAGATAAGGGCTGGTCGTCCCTTGTATCGCTTGAACGGGTGAAATTTATGGCTGNTGCTTAGCAACATGACACTTACACACTAACACACTTACACTTACACTTTCCTTTAT]
[+] EMBL BX619311             [                                  AACATGGAGAAACGAAAAGACTCACTTAGGATAATCGCACAAGCGCTGAGCAGCTACCGTGTCCGAGGAGATGTTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCAAACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGCGAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTGGACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCCTGCATCATGGGGTCCCGCCGGTNCGATCCGTACTGTGAGCGGTTAGCGTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX623153             [                                                   AGACTCACTTAGGATAATCGCACAAGCGCTGAGCAGCTACCGTG CCGAGGAGATGTTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCAAACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGCGAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTGGACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCCTGCATCATGGGGTCCCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAAACGGACCCGGGGTGGCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAAGACATCTGGAGCTACATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGCTACACTTCGATCGGCGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCGGACAGCAGTGGGGAAGAAGTGACTTACCTGCCGGCGTACACGTTGCATGACGCGGACAAGTATGAGCGGGCGGGCCGGCTCTAACACCCCCTTCCGGTGCCCCGTGGTGCCTTTTGGTATGGCTTCGAGGAGGAAAAGACATAATTAAGCTGCCCTCCACGACAAAGCAGCGTGAAAGATAAGGGCTGGTCGTCCCTTGTATCGCTTGAACGGGTG AATTTATGGCTGNTGCTTAGCAACATGACACTTACACACTAACACACTTACACTTACACTTTCC     ]




>consensus_6422#0
CCGCGGACGCGTGGGCGGACAGCAACGAATTTAGAACATGGAGAAACGAAAAGACTCACT
TAGGATAATCGCACAAGCGCTGAGCAGCTACCGTGCCGAGGAGATGTTCATATCGTTCAA
CGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCAAACCTGAAGGATGC
GAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGCGAGATCGAGGAGTT
CGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTGGACGGCGGCATCAA
GGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCCTGCATCATGGGGTC
CCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAAACGGACCCGGGGTG
GCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAAGACATCTGGAGCTA
CATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGCTACACTTCGATCGG
CGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCGGACAGCAGTGGGGA
AGAAGTGACTTACCTGCCGGCGTACACGTTGCATGACGCGGACAAGTATGAGCGGGCGGG
CCGGCTCTAACACCCCCTTCCGGTGCCCCGTGGTGCCTTTTGGTATGGCTTCGAGGAGGA
AAAGACATAATTAAGCTGCCCTCCACGACAAAGCAGCGTGAAGATAAGGGCTGGTCGTCC
CTTGTATCGCTTGAACGGGTGAAATTTATGGCTGNTGCTTAGCAACATGACACTTACACA
CTAACACACTTACACTTACACTTTCCTTTAT

consensusID : consensus_6422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCGCGGCCTCCTTGCAGGCACACAGGCAATCGGCAAACGGCAACCCGGCTCTAACCTCATTACCCTGTTTCTGGCCAGATAATCGCACAAGCGCTGAGCAGCTACCGTGCCGAGGAGATGTTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCAAACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGCGAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTGGACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCCTGCATCATGGGGTCCCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAAACGGACCCGGGGTGGCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAAGACATCTGGAGCTACATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGCTACACTTCGATCGGCGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCGGACAGCAGTGGGGAAGAAGTGACTTACCTGCCGGCGTACACGTTGCATGACGCGGACAAGTATGAG]

[+] EMBL BM644987             [CCGCGGCCTCCTTGCAGGCACACAGGCAATCGGCAAACGGCAACCCGGCTCTAACCTCATTACCCTGTTTCTGGCCAGATAATCGCACAAGCGCTGAGCAGCTACCGTGCCGAGGAGATGTTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCAAACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGCGAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTGGACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCCTGCATCATGGGGTCCCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAAACGGACCCGGGGTGGCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAAGACATCTGGAGCTACATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGCTACACTTCGATCGGCGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCGGACAGCAGTGGGGAAGAAGTGACTTACCTGCCGGCGTACACGTTGCATGACGCGGACAAGTATGAG]




>consensus_6422#1
CCGCGGCCTCCTTGCAGGCACACAGGCAATCGGCAAACGGCAACCCGGCTCTAACCTCAT
TACCCTGTTTCTGGCCAGATAATCGCACAAGCGCTGAGCAGCTACCGTGCCGAGGAGATG
TTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCA
AACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGC
GAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTG
GACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCC
TGCATCATGGGGTCCCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAA
ACGGACCCGGGGTGGCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAA
GACATCTGGAGCTACATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGC
TACACTTCGATCGGCGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCG
GACAGCAGTGGGGAAGAAGTGACTTACCTGCCGGCGTACACGTTGCATGACGCGGACAAG
TATGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6422#0      -----------CCGCGGACGCGTGGGCGGACAGCAA-CG--AATTTAGAACATGGAGAAA 46
consensus_6422#1      CCGCGGCCTCCTTGCAGGCACACAGGCAATCGGCAAACGGCAACCCGGCTCTAACCTCAT 60
                                   ** * * *   ***   * **** **  **    *  *       * 

consensus_6422#0      CGAAAAGACTCACTTAGGATAATCGCACAAGCGCTGAGCAGCTACCGTGCCGAGGAGATG 106
consensus_6422#1      TACCCTGTTTCTGGCCAGATAATCGCACAAGCGCTGAGCAGCTACCGTGCCGAGGAGATG 120
                            *  **      *******************************************

consensus_6422#0      TTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCA 166
consensus_6422#1      TTCATATCGTTCAACGGGGGCAAAGACTGTACGGTGCTGTTAGACCTAATCCACCAAGCA 180
                      ************************************************************

consensus_6422#0      AACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGC 226
consensus_6422#1      AACCTGAAGGATGCGAAACAGATCAAATGTATCTACGTTCGTCCCTTGAACCCTTTCAGC 240
                      ************************************************************

consensus_6422#0      GAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTG 286
consensus_6422#1      GAGATCGAGGAGTTCGTGGACCGGTGCCGGCAGCACTACGGCATCACGATAGCGACGGTG 300
                      ************************************************************

consensus_6422#0      GACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCC 346
consensus_6422#1      GACGGCGGCATCAAGGCGGCGCTCGAGCAGATCTGCCGGGCGGATCCACAGCTGAAGGCC 360
                      ************************************************************

consensus_6422#0      TGCATCATGGGGTCCCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAA 406
consensus_6422#1      TGCATCATGGGGTCCCGCCGGTCCGATCCGTACTGTGAGCGGTTAGCGTCGTTTCAGGAA 420
                      ************************************************************

consensus_6422#0      ACGGACCCGGGGTGGCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAA 466
consensus_6422#1      ACGGACCCGGGGTGGCCTCGATTGATGCGCATCAATCCACTGCTCGAATGGACCTGCGAA 480
                      ************************************************************

consensus_6422#0      GACATCTGGAGCTACATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGC 526
consensus_6422#1      GACATCTGGAGCTACATCCGGGAACACAACGTACCGTACTGTGCGCTGTACGATAGAGGC 540
                      ************************************************************

consensus_6422#0      TACACTTCGATCGGCGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCG 586
consensus_6422#1      TACACTTCGATCGGCGATCGAACGAACACAATTCCAAACCCTCACCTGAAGGTGGAAGCG 600
                      ************************************************************

consensus_6422#0      GACAGCAGTGGGGAAGAAGTGACTTACCTGCCGGCGTACACGTTGCATGACGCGGACAAG 646
consensus_6422#1      GACAGCAGTGGGGAAGAAGTGACTTACCTGCCGGCGTACACGTTGCATGACGCGGACAAG 660
                      ************************************************************

consensus_6422#0      TATGAGCGGGCGGGCCGGCTCTAACACCCCCTTCCGGTGCCCCGTGGTGCCTTTTGGTAT 706
consensus_6422#1      TATGAG------------------------------------------------------ 666
                      ******                                                      

consensus_6422#0      GGCTTCGAGGAGGAAAAGACATAATTAAGCTGCCCTCCACGACAAAGCAGCGTGAAGATA 766
consensus_6422#1      ------------------------------------------------------------
                                                                                  

consensus_6422#0      AGGGCTGGTCGTCCCTTGTATCGCTTGAACGGGTGAAATTTATGGCTGNTGCTTAGCAAC 826
consensus_6422#1      ------------------------------------------------------------
                                                                                  

consensus_6422#0      ATGACACTTACACACTAACACACTTACACTTACACTTTCCTTTAT 871
consensus_6422#1      ---------------------------------------------