cluster # 6429

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Anopheles gambiae
cluster # 6429 cluster # 6429 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6429#0 length = 749 sequences # 4

consensus_6429#1 length = 581 sequences # 1

consensusID : consensus_6429#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 749
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGTGAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGGTGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATATGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGAAGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCGCTGCCATG-ACCAGGAG-AAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTACTTGCAGTTTCGCTTTCCACATTAGCAGCACCGTACAGCTGATGGA]

[+] EMBL BM590988             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGTGAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGGTGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATATGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGAAGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCGCTGCCATGAACCAGGAGCAAGTTCGTTGATC                                                                   ]
[+] EMBL BM654031             [                           ccgGGAGTAACTTACCGGTTGCGTACCGTGTGTGAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGGTGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATATGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGAAGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCG                                                                                                  ]
[+] EMBL BX608229             [                                                                                          GTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATACGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGAGGCTGTGTCCATCAGTTGGAGGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTGCTGCAGGAAGGATCCGCTGCCATG ACCAGGAG AAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTACTTGCAGTTTCGCTTTCCACATTAGCAGCACCGTACAGCTGATGGA]
[+] EMBL BX628857             [                                                                                             TGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATACGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGAGGCTGTGTCCATCAGTTGGAGGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTGCTGCAGGAAGGATCCGCTGCCATG ACCAGGAG AAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTAC                                             ]




>consensus_6429#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGT
GAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTG
AAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGG
TGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGC
AACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATA
TGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCC
CGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCAT
CCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCG
TGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGA
AGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGT
TGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCGCTGCCAT
GACCAGGAGAAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTACTTGCAGTTTCGCTTTC
CACATTAGCAGCACCGTACAGCTGATGGA

consensusID : consensus_6429#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [GAATCCCCGAGGTTCGCGGAGTACTTACCGGTTGCGTACGTGTGTGAAGTCCATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAAACGCCGTCAGCCTGTACGACACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTACAAAAACAGGATACGGGCTCGATGTGACTTCTGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTTCATCCGAACGCTGAGGCACTGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCCACAATGCCNTGCTAACATCTTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGTGTCCATCACNTGGAGCGGAGGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC]

[+] EMBL AL931800             [GAATCCCCGAGGTTCGCGGAGTACTTACCGGTTGCGTACGTGTGTGAAGTCCATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAAACGCCGTCAGCCTGTACGACACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTACAAAAACAGGATACGGGCTCGATGTGACTTCTGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTTCATCCGAACGCTGAGGCACTGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCCACAATGCCNTGCTAACATCTTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGTGTCCATCACNTGGAGCGGAGGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC]




>consensus_6429#1
GAATCCCCGAGGTTCGCGGAGTACTTACCGGTTGCGTACGTGTGTGAAGTCCATGATTAT
ACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAA
CGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTC
TTAAACGCCGTCAGCCTGTACGACACACAATGCGTTGCTACGCAACGATCACCGCGGTGG
CTTCGGTAATAGTGGGACTTTTGGCTCTACAAAAACAGGATACGGGCTCGATGTGACTTC
TGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGTGCCCGTGGTAGAGTGCGAC
GAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTTCATCCGAACGCTGAGGCAC
TGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCCACAATGCCNTGCTAACATC
TTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGTGTCCATCACNTGGAGCGGA
GGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6429#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGT 60
consensus_6429#1      ------------GAATCCCCGAG-GTTCGCGGAGTA-CTTACCGGTTGCGTAC-GTGTGT 45
                                  *      ** * *  ********* **************** ******

consensus_6429#0      GAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTG 120
consensus_6429#1      GAAGTCCATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTG 105
                      ****** *****************************************************

consensus_6429#0      AAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGG 180
consensus_6429#1      AAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGG 165
                      ********************************************** *** * *******

consensus_6429#0      TGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGC 240
consensus_6429#1      TGTCCCAGGAGTGTCTTA-AACGCCGTCAGCCTGTACGAC-ACACAATGCGTTGCTACGC 223
                      ******** ********* ********************* *******************

consensus_6429#0      AACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATA 300
consensus_6429#1      AACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTA-CAAAAACAGGATA 282
                      ********************************************** *************

consensus_6429#0      TGGCCTCGATTGTGACTTCTGTTACGGCGATGAA-GATTGTTCGC-TGGGATTGGAG-GT 357
consensus_6429#1      CGGGCTCGAT-GTGACTTCTGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGT 341
                       ** ****** *********************** ********** **********  **

consensus_6429#0      GCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTT 417
consensus_6429#1      GCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTT 401
                      ************************************** *********************

consensus_6429#0      CATCCGACCGCTGAG-CACTGCGCTGCCCAC---GAAACATAATCACTATGAGTGCATCC 473
consensus_6429#1      CATCCGAACGCTGAGGCACTGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCC 461
                      ******* ******* ***** ****** **   ********************** ***

consensus_6429#0      ACG-TGC-GTGCTA-CATCT-GTGAG-TGGCCACG-TGTTCC-TGTTTACCCGCGGCTGT 526
consensus_6429#1      ACAATGCCNTGCTAACATCTTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGT 521
                      **  ***  ***** ***** ****  *******  *** ** ****** **   *****

consensus_6429#0      GTCCATCAGTTGGAA-GGAGG-AAGACACTTTT-GCTCCCTACCACATGCTGCGTTTCAG 583
consensus_6429#1      GTCCATCACNTGGAGCGGAGGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC 581
                      ********  ****  ***** ** ****** * * ****  * **    * * *     

consensus_6429#0      GGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAG 643
consensus_6429#1      ------------------------------------------------------------
                                                                                  

consensus_6429#0      GAAGGATCCGCTGCCATGACCAGGAGAAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTA 703
consensus_6429#1      ------------------------------------------------------------
                                                                                  

consensus_6429#0      CTTGCAGTTTCGCTTTCCACATTAGCAGCACCGTACAGCTGATGGA 749
consensus_6429#1      ----------------------------------------------