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Anopheles gambiae
cluster # 6440 cluster # 6440       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6440#0 length = 1084 sequences # 4  
consensus_6440#1 length = 642 sequences # 1  

consensusID : consensus_6440#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1084
fasta sequence
                              [CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAACCTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTTGAAGAGGCAGCAA---AGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAG------AAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTTGATCGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGTTGAAAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTGCGTCGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTTAAGTGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAATTCAAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTATAGCAATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAACCTCGAT]

[+] EMBL BM651952             [CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAACCTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTTGAAGAGGCAGCAA   AGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAG      AAAAACAACATAAAATCGTACACTGTACTTAGTGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX626783             [                                                                        AATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTTGAAGAGGCAGCAA   AGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAG      AAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGGTTGATCGTTCGTTGATTGTAAAGCTCNAAC                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM639155             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 atTCCGTTTTTATAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAATTTGAAGAAGAA AAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGTTTTGAAGAGACAGCAAAGCAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTTGAACGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGT                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX611011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAG      AAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTTGATCGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGTTGAAAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTGCGTCGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTTAAGTGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAATTCAAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTATAGCAATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAACCTCGAT]


>consensus_6440#0 CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAAC CTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTG TGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAA TCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTT TTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACA ATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTT CTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTT TTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGT AACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTT GAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTA GATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGA GTAATACACACAGGTTTGATCGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAAC GCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGTTGA AAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTGCGT CGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTTAAG TGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAATTC AAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTATAGC AATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAACCT CGAT



consensusID : consensus_6440#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence
                              [CCCGAGGNTATCAGGTATCATTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTGTTCTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCGTTTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTGATCGTTCGTGCATTGTACAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAA]

[+] EMBL AL931737             [CCCGAGGNTATCAGGTATCATTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTGTTCTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCGTTTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTGATCGTTCGTGCATTGTACAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAA]


>consensus_6440#1 CCCGAGGNTATCAGGTATCATTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATA ATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTT TAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTT ATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAG CGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTGTT CTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCA CACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTC CCCTCTGTGATTGGTCATTGCGTTTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGA GCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAA ATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTGATCGTTCGTGCATTGTAC AAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6440#0      CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAAC 60
consensus_6440#1      ------------------------------------------------------------
                                                                                  

consensus_6440#0      CTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTG 120
consensus_6440#1      ------------------------------------CCCGAGGNTATCAGGTATCATT-G 23
                                                             *  *   ************ *

consensus_6440#0      TGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAA 180
consensus_6440#1      TGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAA 83
                      ************************************************************

consensus_6440#0      TCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTT 240
consensus_6440#1      TCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTT 143
                      ************************************************************

consensus_6440#0      TTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACA 300
consensus_6440#1      TTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACA 203
                      ************************************************************

consensus_6440#0      ATAATCATACGATGCAGCTATTCAGCTCTCTTG-CAGCGAATTTTCTCCCCATTTTACGT 359
consensus_6440#1      ATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAGCGAATTTTCTCCCCATTTTACGT 263
                      ********************************* **************************

consensus_6440#0      TCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTT 419
consensus_6440#1      TCTGATTTTGATGATTATTTATCGCTACTACTTTGTTCTGTATTTACCCGGCTGGTTTTT 323
                      **********************************  * **********************

consensus_6440#0      TTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTG 479
consensus_6440#1      TTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTG 383
                      ************************************************************

consensus_6440#0      TAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGC-T 538
consensus_6440#1      TAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCGT 443
                      ********************************************************** *

consensus_6440#0      TTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGG 598
consensus_6440#1      TTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGG 503
                      ************************************************************

consensus_6440#0      TAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGT 658
consensus_6440#1      TAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGT 563
                      ************************************************************

consensus_6440#0      GAGTAATACACACAGGTTTGATCGTTCGTTGATTGTA-AAGCTCAAACGTATAAATTGTT 717
consensus_6440#1      GAGTAATACACACAGGTT-GATCGTTCGTGCATTGTACAAGCTCAAACGTATAAATTGTT 622
                      ****************** **********  ****** **********************

consensus_6440#0      AACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGT 777
consensus_6440#1      AACGCTTGCCAATGTGTCAA---------------------------------------- 642
                      ********************                                        

consensus_6440#0      TGAAAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTG 837
consensus_6440#1      ------------------------------------------------------------
                                                                                  

consensus_6440#0      CGTCGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTT 897
consensus_6440#1      ------------------------------------------------------------
                                                                                  

consensus_6440#0      AAGTGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAA 957
consensus_6440#1      ------------------------------------------------------------
                                                                                  

consensus_6440#0      TTCAAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTAT 1017
consensus_6440#1      ------------------------------------------------------------
                                                                                  

consensus_6440#0      AGCAATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAA 1077
consensus_6440#1      ------------------------------------------------------------
                                                                                  

consensus_6440#0      CCTCGAT 1084
consensus_6440#1      -------
                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)