These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1084 fasta sequence [CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAACCTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTTGAAGAGGCAGCAA---AGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAG------AAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTTGATCGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGTTGAAAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTGCGTCGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTTAAGTGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAATTCAAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTATAGCAATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAACCTCGAT] [+] EMBL BM651952 [CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAACCTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTTGAAGAGGCAGCAA AGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAG AAAAACAACATAAAATCGTACACTGTACTTAGTGCGT ] [+] EMBL BX626783 [ AATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTTGAAGAGGCAGCAA AGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAG AAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGGTTGATCGTTCGTTGATTGTAAAGCTCNAAC ] [+] EMBL BM639155 [ atTCCGTTTTTATAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAATTTGAAGAAGAA AAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGTTTTGAAGAGACAGCAAAGCAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTTGAACGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGT ] [+] EMBL BX611011 [ GAG AAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTTGATCGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGTTGAAAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTGCGTCGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTTAAGTGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAATTCAAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTATAGCAATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAACCTCGAT] consensusID : consensus_6440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCCGAGGNTATCAGGTATCATTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTGTTCTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCGTTTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTGATCGTTCGTGCATTGTACAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAA] [+] EMBL AL931737 [CCCGAGGNTATCAGGTATCATTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTGTTCTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCGTTTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTGATCGTTCGTGCATTGTACAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6440#0 CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAAC 60 consensus_6440#1 ------------------------------------------------------------ consensus_6440#0 CTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTG 120 consensus_6440#1 ------------------------------------CCCGAGGNTATCAGGTATCATT-G 23 * * ************ * consensus_6440#0 TGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAA 180 consensus_6440#1 TGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAA 83 ************************************************************ consensus_6440#0 TCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTT 240 consensus_6440#1 TCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTT 143 ************************************************************ consensus_6440#0 TTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACA 300 consensus_6440#1 TTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACA 203 ************************************************************ consensus_6440#0 ATAATCATACGATGCAGCTATTCAGCTCTCTTG-CAGCGAATTTTCTCCCCATTTTACGT 359 consensus_6440#1 ATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAGCGAATTTTCTCCCCATTTTACGT 263 ********************************* ************************** consensus_6440#0 TCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTT 419 consensus_6440#1 TCTGATTTTGATGATTATTTATCGCTACTACTTTGTTCTGTATTTACCCGGCTGGTTTTT 323 ********************************** * ********************** consensus_6440#0 TTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTG 479 consensus_6440#1 TTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTG 383 ************************************************************ consensus_6440#0 TAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGC-T 538 consensus_6440#1 TAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCGT 443 ********************************************************** * consensus_6440#0 TTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGG 598 consensus_6440#1 TTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGG 503 ************************************************************ consensus_6440#0 TAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGT 658 consensus_6440#1 TAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGT 563 ************************************************************ consensus_6440#0 GAGTAATACACACAGGTTTGATCGTTCGTTGATTGTA-AAGCTCAAACGTATAAATTGTT 717 consensus_6440#1 GAGTAATACACACAGGTT-GATCGTTCGTGCATTGTACAAGCTCAAACGTATAAATTGTT 622 ****************** ********** ****** ********************** consensus_6440#0 AACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGT 777 consensus_6440#1 AACGCTTGCCAATGTGTCAA---------------------------------------- 642 ******************** consensus_6440#0 TGAAAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTG 837 consensus_6440#1 ------------------------------------------------------------ consensus_6440#0 CGTCGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTT 897 consensus_6440#1 ------------------------------------------------------------ consensus_6440#0 AAGTGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAA 957 consensus_6440#1 ------------------------------------------------------------ consensus_6440#0 TTCAAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTAT 1017 consensus_6440#1 ------------------------------------------------------------ consensus_6440#0 AGCAATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAA 1077 consensus_6440#1 ------------------------------------------------------------ consensus_6440#0 CCTCGAT 1084 consensus_6440#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||