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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1084 fasta sequence
[CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAACCTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTTGAAGAGGCAGCAA---AGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAG------AAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTTGATCGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGTTGAAAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTGCGTCGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTTAAGTGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAATTCAAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTATAGCAATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAACCTCGAT]
[+] EMBL BM651952 [CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAACCTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTTGAAGAGGCAGCAA AGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAG AAAAACAACATAAAATCGTACACTGTACTTAGTGCGT ]
[+] EMBL BX626783 [ AATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCTTTGAAGAGGCAGCAA AGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAG AAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGGTTGATCGTTCGTTGATTGTAAAGCTCNAAC ]
[+] EMBL BM639155 [ atTCCGTTTTTATAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAATTTGAAGAAGAA AAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGTTTTGAAGAGACAGCAAAGCAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTTGAACGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGT ]
[+] EMBL BX611011 [ GAG AAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTTGATCGTTCGTTGATTGTAAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGTTGAAAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTGCGTCGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTTAAGTGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAATTCAAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTATAGCAATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAACCTCGAT]
consensusID : consensus_6440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[CCCGAGGNTATCAGGTATCATTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTGTTCTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCGTTTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTGATCGTTCGTGCATTGTACAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAA]
[+] EMBL AL931737 [CCCGAGGNTATCAGGTATCATTGTGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAATCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTTTTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACAATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAGCGAATTTTCTCCCCATTTTACGTTCTGATTTTGATGATTATTTATCGCTACTACTTTGTTCTGTATTTACCCGGCTGGTTTTTTTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTGTAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCGTTTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGGTAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGTGAGTAATACACACAGGTTGATCGTTCGTGCATTGTACAAGCTCAAACGTATAAATTGTTAACGCTTGCCAATGTGTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6440#0 CCGAAAACATCTCGCAATTAATGAAAAATCTTGTATTTATTGGAGGTTGACACGGAAAAC 60
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CTTGTATAATTCAATTGGTAACGTATTATGTTTAATTTTGTAGTATTCAGGTATCATTTG 120
consensus_6440#1 ------------------------------------CCCGAGGNTATCAGGTATCATT-G 23
* * ************ *
consensus_6440#0 TGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAA 180
consensus_6440#1 TGGAAGGAAGAAATATGAAACCAATTTTAAAGTAATAATTTTGAATGGTACAAATAGAAA 83
************************************************************
consensus_6440#0 TCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTT 240
consensus_6440#1 TCATGTCATTTTAAAACCGATCTGGCGGGTTCTATTTTAAGAAGTTAATCAGTTTTCTTT 143
************************************************************
consensus_6440#0 TTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACA 300
consensus_6440#1 TTGTGCCGCAATTCGATACGATTGTGTGCAGTATTTTATCCAACCAAACTGTTCTTAACA 203
************************************************************
consensus_6440#0 ATAATCATACGATGCAGCTATTCAGCTCTCTTG-CAGCGAATTTTCTCCCCATTTTACGT 359
consensus_6440#1 ATAATCATACGATGCAGCTATTCAGCTCTCTTGGCAGCGAATTTTCTCCCCATTTTACGT 263
********************************* **************************
consensus_6440#0 TCTGATTTTGATGATTATTTATCGCTACTACTTTTGTTTGTATTTACCCGGCTGGTTTTT 419
consensus_6440#1 TCTGATTTTGATGATTATTTATCGCTACTACTTTGTTCTGTATTTACCCGGCTGGTTTTT 323
********************************** * **********************
consensus_6440#0 TTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTG 479
consensus_6440#1 TTTTATTTACAAAGAATCCGTTTTTAAAGTTACCCCACACGATTAGTGAGTAGTAGATTG 383
************************************************************
consensus_6440#0 TAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGC-T 538
consensus_6440#1 TAACTTGAAGAAGAAGAAAAAAAGATATACAAAACTCCCCTCTGTGATTGGTCATTGCGT 443
********************************************************** *
consensus_6440#0 TTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGG 598
consensus_6440#1 TTGAAGAGGCAGCAAAGCAGCAGCAGCAGCAGCAGGAGCAGTAAGATGTTTCGACTTTGG 503
************************************************************
consensus_6440#0 TAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGT 658
consensus_6440#1 TAGATTGGATTTAAGAAAGAGAGAAAAACAACATAAAATCGTACACTGTACTTAGTGCGT 563
************************************************************
consensus_6440#0 GAGTAATACACACAGGTTTGATCGTTCGTTGATTGTA-AAGCTCAAACGTATAAATTGTT 717
consensus_6440#1 GAGTAATACACACAGGTT-GATCGTTCGTGCATTGTACAAGCTCAAACGTATAAATTGTT 622
****************** ********** ****** **********************
consensus_6440#0 AACGCTTGCCAATGTGTCAAAGAATGTAATGCAACACAAATATTGATACAATATTCCCGT 777
consensus_6440#1 AACGCTTGCCAATGTGTCAA---------------------------------------- 642
********************
consensus_6440#0 TGAAAAAAGAAAACCCCAAAAAAAAAAAAAATCAAACGAATACGCTCCACTAAAACGCTG 837
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CGTCGAGAGAGAGTGTGTGTGTGTGCAGACATATTGGTTTTAATGCATTATGAGTTCCTT 897
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 AAGTGATCTTGCTACTAAAGCAGAGGCGCATTGCGTTAGTGTACTATCGGTTAGCGGTAA 957
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 TTCAAGATAATTAGATATGGTGAGTAGATGGGAATACAGATACTAAAGGTAGATTTGTAT 1017
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 AGCAATGTGCTACGTTAAGAGTTTCGTCAAGCTGTACGTAAGCCACCAGCTTCACCGTAA 1077
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CCTCGAT 1084
consensus_6440#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||