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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 863 fasta sequence
[GAAGAAATGCGTAATTACTAACTAAACACACGTACTCACGTTATGCGAATTCAATACTATTATACACGATCATGTTCTTCTTCTTTTTCTTCTTCTTGGCGTAACGACCATCGCGGTCATGCCGGCTCGATACAAAGGGCTTTCGGGACTTATTAGTACCACGCAGCCGGATGTAGTCCGTCCTTGCTATGGGGCGACGGTCCATATAAGGTTTGAACCCACGACGGGCATTGGTCGGCTTGATAAGTCGTGCGAGTTGACGACTGGCCCACGAGACCACCCTGTTAATTTATCTAATTGTTTGTGTTTTGCTAAGAAAATATAAAACTATGTCCGAAACATCACTAACTTCACACACATTAGCAGTTTTGTTGTTGTTGTTGTAACGGAGAGGAAACAATTAACCTTCACTACGCACGTAACTAACAACCCTCGCCATACATGAGAGAAGCAGGTTAAAGCGAATAAAGGATAAAATCAGAAGTGTGACGAACCTTTTTCACTCGAATTTGTAAATTAACGTTCTTGGGCTTTCTAAAACCTCTGTAGCCCTTCTTTCTACTGATGTGCGGAGAGATAGTCTCGAGCAGTTTGATTGATGGAATTTTACTAAAATAAATTAAACCTTTCTACATATCTCTCTCTCTCTTTTTCTTCTTCTTCTTTCTCTCTTGCTCTTTCTCTCTCTCTGCCACGTTTAGTTCTACGCCTTAACACTGTCGCACTGAATTTCACAAAAATTTCAAACATACGACTACGCTTAGGTCTGACCAATGTTTTGTTCTAGTTATATGCGTGTAGTTGCCTACAATGCATGCACATATACAATAGGAAAGTATGGGTTGTCCTTCCCGGTGCGCAGC]
[+] EMBL CNS09BHD [GAAGAAATGCGTAATTACTAACTAAACACACGTACTCACGTTATGCGAATTCAATACTATTATACACGATCATGTTCTTCTTCTTTTTCTTCTTCTTGGCGTAACGACCATCGCGGTCATGCCGGCTCGATACAAAGGGCTTTCGGGACTTATTAGTACCACGCAGCCGGATGTAGTCCGTCCTTGCTATGGGGCGACGGTCCATATAAGGTTTGAACCCACGACGGGCATTGGTCGGCTTGATAAGTCGTGCGAGTTGACGACTGGCCCACGAGACCACCCTGTTAATTTATCTAATTGTTTGTGTTTTGCTAAGAAAATATAAAACTATGTCCGAAACATCACTAACTTCACACACATTAGCAGTTTTGTTGTTGTTGTTGTAACGGAGAGGAAACAATTAACCTTCACTACGCACGTAACTAACAACCCTCGCCATAAATGAGAAAAGCAGGTTAAAGCGAATAAAGGATAAAATCAGAAGTGTGACGAACCTTTTTCACTCGAATTTGTAAATTAACGTTCTTGGGCTTTCTAAAACCTCTGTAGCCCTTCTTTCTACTGATGTGCGGAGAGATAGTCTCGAGCAGTTTGATTGATGGAATTTTACTAAAATAAATTAAACCTTTCTACATATCTCTCTCTCTCTTTTTCTTCTTCTTCTTTCTCTCTTGCTCTTTCTCTCTCTCTGCCACGTTTAGTTCTACGCCTTAACACTGTCGCACTGAATTTCACAAAAATTTCAAACATACGACTACGCTTAGGTCTGACCAATGTTTTGTTCTAGTTATATGCGTGTAGTTGCCTACAATGCAT ]
[-] EMBL BX617249 [ AGTACCACGCAGCCGGATGTAGTCCGTCCTTGATATGGGGCGACGGTCCATATAAGGTTTGAACCCACGACGGGCATTGGTCGGCTTGATAAGTCGTGCGAGTTGACGACTGGCCCACGAGACCACCCTGTTAATTTATCTAATTGTTTGTGTTTTGCTAAGAAAATATAAAACTATGTCCGAAACATCACTAACTTCACACACATTAGCAGTTTTGTTGT TT TTGTAACGGAGAGGAAACAATGAACCTTCACTACGCACGTAAATAACAACCCTCGCCATACATGAGAGAAGCAGGTTAAAGCGAATAAAGGAT ]
[-] EMBL CNS09BHC [ ACGCAGCCGGATGTAGTCCGTCCTTGTTATGGGGCGACGGTCCATATAAGGTTTGAACCCACGACGGGCATTGGTCGGCTTGATAAGTCGTGCGAGTTGACGACTGGCCCACGAGACCACCCTGTTAATTTATCTAATTGTTTGTGTTTTGCTAAGAAAATATAAAACTATGTCCGAAACATCACTAACTTCACACACATTAGCAGTTTTGTTGTTGTTGTTGTAACGGAGAGGAAACAATTAACCTTCACTACGCACGTAACTAACAACCCTCGCCATACATGAGAGAAGCAGGTTAAAGCGAATAAAGGATAAAATCAGAAGTGTGACGAACCTTTTTCACTCGAATTTGTAAATTAACGTTCTTGGGCTTTCTAAAACCTCTGTAGCCCTTCTTTCTACTGATGTGCGGAGAGATAGTCTCGAGCAGTTTGATTGATGGAATTTTACTAAAATAAATTAAACCTTTCTACATATCTCTCTCTCTCTTTTTCTTCTTCTTCTTTCTCTCTTGCTCTTTCTCTCTCTCTGCCACGTTTAGTTCTACGCCTTAACACTGTCGCACTGAATTTCACAAAAATTTCAAACATACGACTACGCTTAGGTCTGACCAATGTTTTGTTCTAGTTATATGCGTGTAGTTGCCTACAATGCATGCACATATACAATAGGAAAGTATGGGTTGTCCTTCCCGGTGCGCAGC]
[-] EMBL CNS09CAB [ GTTGACGACTGGCCCACGAGACCACCCTGTTAATTTATCTAATTGTTTGTGTTTTGCTAAGAAAATATAAAACTATGTCCGAAACATCACTAACTTCACACACATTAGCAGTTTTGTTGTTGTTGTTGTAACGGAGAGGAAACAATTAACCTTCACTACGCACGTAACTAACAACCCTCGCCATACATGAGAGAAGCAGGTTAAAGCGAATAAAGGATAAAATCAGAAGTGTGACGAACCTTTTTCACTCGAATTTGTAAATTAACGTTCTTGGGCTTTCTAAAACCTCTGTAGCCCTTCTTTCTACTGATGTGCGGA ]
consensusID : consensus_6444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[TTCACACACATAAGCAGTTTTGTTGTTGTTGTTGTAACGGAGAGGAAACAATGACCCTTCACTACGCACGTAACTAACAACCCTCGCCATACATGAGAGAAGCAGGTTAAAACGAATAAAGGATAAAATCAGAAGTGAGACGAACCTTTTTCACTCGAATTTGTAAATTAACGTTCTTGGGCTTTCTAAAACCTCTGTAGCCCTTCTTTCTACTGATGTGCGGAGAGATAGTCTCGAGCAGTTTGATTGATGGAATTTTACTAAAATAAATTAAACCTTTCTACATATCTCTCTCTCTCTTTTTCTTCTTCTTCTTTCTCTCTTGCTCTTTCTCTCTCTCTGCCACGTTTAGTTCTACGCCTTAACACTGTCGCACTGAATTTCACAAAAATTTCAAACATACGACTACGCTTAGGTCTGACCAATGTTTTGTTCTAGTTATATGCGTGTAGTTGCCTACAATGCATGCACATATACAATAGGAAAGTAGCCCTTGTAATGGAAACCGCACATCAAGGGTACAATGCTGTCATTTTCTTCTTCAACCATATCATTTTATTCTAACAAGGTTGGACATCATAATCGGTCGTCTTGCGTTTTTCTACCCCGAAACGTTATATCTTAAAATGAAAGATAATCGACATACTTGCACAGAACGTGTGGTCTCTCTAAACGTCATCGG]
[-] EMBL BM603069 [TTCACACACATAAGCAGTTTTGTTGTTGTTGTTGTAACGGAGAGGAAACAATGACCCTTCACTACGCACGTAACTAACAACCCTCGCCATACATGAGAGAAGCAGGTTAAAACGAATAAAGGATAAAATCAGAAGTGAGACGAACCTTTTTCACTCGAATTTGTAAATTAACGTTCTTGGGCTTTCTAAAACCTCTGTAGCCCTTCTTTCTACTGATGTGCGGAGAGATAGTCTCGAGCAGTTTGATTGATGGAATTTTACTAAAATAAATTAAACCTTTCTACATATCTCTCTCTCTCTTTTTCTTCTTCTTCTTTCTCTCTTGCTCTTTCTCTCTCTCTGCCACGTTTAGTTCTACGCCTTAACACTGTCGCACTGAATTTCACAAAAATTTCAAACATACGACTACGCTTAGGTCTGACCAATGTTTTGTTCTAGTTATATGCGTGTAGTTGCCTACAATGCATGCACATATACAATAGGAAAGTAGCCCTTGTAATGGAAACCGCACATCAAGGGTACAATGCTGTCATTTTCTTCTTCAACCATATCATTTTATTCTAACAAGGTTGGACATCATAATCGGTCGTCTTGCGTTTTTCTACCCCGAAACGTTATATCTTAAAATGAAAGATAATCGACATACTTGCACAGAACGTGTGGTCTCTCTAAACGTCATCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6444#0 GAAGAAATGCGTAATTACTAACTAAACACACGTACTCACGTTATGCGAATTCAATACTAT 60
consensus_6444#1 ------------------------------------------------------------
consensus_6444#0 TATACACGATCATGTTCTTCTTCTTTTTCTTCTTCTTGGCGTAACGACCATCGCGGTCAT 120
consensus_6444#1 ------------------------------------------------------------
consensus_6444#0 GCCGGCTCGATACAAAGGGCTTTCGGGACTTATTAGTACCACGCAGCCGGATGTAGTCCG 180
consensus_6444#1 ------------------------------------------------------------
consensus_6444#0 TCCTTGCTATGGGGCGACGGTCCATATAAGGTTTGAACCCACGACGGGCATTGGTCGGCT 240
consensus_6444#1 ------------------------------------------------------------
consensus_6444#0 TGATAAGTCGTGCGAGTTGACGACTGGCCCACGAGACCACCCTGTTAATTTATCTAATTG 300
consensus_6444#1 ------------------------------------------------------------
consensus_6444#0 TTTGTGTTTTGCTAAGAAAATATAAAACTATGTCCGAAACATCACTAACTTCACACACAT 360
consensus_6444#1 -------------------------------------------------TTCACACACAT 11
***********
consensus_6444#0 TAGCAGTTTTGTTGTTGTTGTTGTAACGGAGAGGAAACAATTAACCTTCACTACGCACGT 420
consensus_6444#1 AAGCAGTTTTGTTGTTGTTGTTGTAACGGAGAGGAAACAATGACCCTTCACTACGCACGT 71
**************************************** * ****************
consensus_6444#0 AACTAACAACCCTCGCCATACATGAGAGAAGCAGGTTAAAGCGAATAAAGGATAAAATCA 480
consensus_6444#1 AACTAACAACCCTCGCCATACATGAGAGAAGCAGGTTAAAACGAATAAAGGATAAAATCA 131
**************************************** *******************
consensus_6444#0 GAAGTGTGACGAACCTTTTTCACTCGAATTTGTAAATTAACGTTCTTGGGCTTTCTAAAA 540
consensus_6444#1 GAAGTGAGACGAACCTTTTTCACTCGAATTTGTAAATTAACGTTCTTGGGCTTTCTAAAA 191
****** *****************************************************
consensus_6444#0 CCTCTGTAGCCCTTCTTTCTACTGATGTGCGGAGAGATAGTCTCGAGCAGTTTGATTGAT 600
consensus_6444#1 CCTCTGTAGCCCTTCTTTCTACTGATGTGCGGAGAGATAGTCTCGAGCAGTTTGATTGAT 251
************************************************************
consensus_6444#0 GGAATTTTACTAAAATAAATTAAACCTTTCTACATATCTCTCTCTCTCTTTTTCTTCTTC 660
consensus_6444#1 GGAATTTTACTAAAATAAATTAAACCTTTCTACATATCTCTCTCTCTCTTTTTCTTCTTC 311
************************************************************
consensus_6444#0 TTCTTTCTCTCTTGCTCTTTCTCTCTCTCTGCCACGTTTAGTTCTACGCCTTAACACTGT 720
consensus_6444#1 TTCTTTCTCTCTTGCTCTTTCTCTCTCTCTGCCACGTTTAGTTCTACGCCTTAACACTGT 371
************************************************************
consensus_6444#0 CGCACTGAATTTCACAAAAATTTCAAACATACGACTACGCTTAGGTCTGACCAATGTTTT 780
consensus_6444#1 CGCACTGAATTTCACAAAAATTTCAAACATACGACTACGCTTAGGTCTGACCAATGTTTT 431
************************************************************
consensus_6444#0 GTTCTAGTTATATGCGTGTAGTTGCCTACAATGCATGCACATATACAATAGGAAAGTATG 840
consensus_6444#1 GTTCTAGTTATATGCGTGTAGTTGCCTACAATGCATGCACATATACAATAGGAAAGTAGC 491
**********************************************************
consensus_6444#0 GGTTGTCCTTCCCGGTGCGCAGC------------------------------------- 863
consensus_6444#1 CCTTGTAATGGAAACCGCACATCAAGGGTACAATGCTGTCATTTTCTTCTTCAACCATAT 551
**** * ** ** *
consensus_6444#0 ------------------------------------------------------------
consensus_6444#1 CATTTTATTCTAACAAGGTTGGACATCATAATCGGTCGTCTTGCGTTTTTCTACCCCGAA 611
consensus_6444#0 ------------------------------------------------------------
consensus_6444#1 ACGTTATATCTTAAAATGAAAGATAATCGACATACTTGCACAGAACGTGTGGTCTCTCTA 671
consensus_6444#0 -----------
consensus_6444#1 AACGTCATCGG 682
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||