These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1022 fasta sequence [ATGAACAAATCGCCACACCGGCGAAATTACAGCAAAGCTACGTTGTAGTTGATCTTGCTAACAAACTGACCATGCTTTGGTCATTCCTGCAAACCCATCCTAAACAAAAAGTTATAGTATTTTTTTCCACTTGCAAACAGGTGAAATATTTCTACCAGGTATTTAAGAAGCTTCGTCCGACCTCTTTACTGTTACCATTGTATGGGGGAATGAACCAAGAAAAGCGTAACAAAATATATGGTGATTTTTGCAAAAAGAAAACAAATGTATGCTTGTTAGCCACAGATGTAGCATCGCGTGGGCTGGACTTCCCTAAGGTTAACTGGGTGGTTCAAATTGATTGCCCCGAAGACGTTGCCCAGTACATACATAGAGCCGGACGAACTGCAAGGTTGAATACAAGTGGTGAAAATTTACTCGTTTTGCTCCCGCACGAAGTAGATCCAATGTTAGATTCTCTAGAAAAGAACAAAATACCTATTAAGCAGATTAAAATTGATGAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGATGAGTTTGCAAACTCTTTANGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTAAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGATGGTGCCCCGGTT] [+] EMBL BX625559 [ATGAACAAATCGCCACACCGGCGAAATTACAGCAAAGCTACGTTGTAGTTGATCTTGCTAACAAACTGACCATGCTTTGGTCATTCCTGCAAACCCATCCTAAACAAAAAGTTATAGTATTTTTTTCCACTTGCAAACAGGTGAAATATTTCTACCAGGTATTTAAGAAGCTTCGTCCGACCTCTTTACTGTTACCATTGTATGGGGGAATGAACCAAGAAAAGCGTAACAAAATATATGGTGATTTTTGCAAAAAGAAAACAAATGTATGCTTGTTAGCCACAGATGTAGCATCGCGTGGGCTGGACTTCCCTAAGGTTAACTGGGTGGTTCAAATTGATTGCCCCGAAGACGTTGCCCAGTACATACATAGAGCCGGACGAACTGCAAGGTTGAATACAAGTGGTGAAAATTTACTCGTTTTGCTCCCGCACGAAGTAGATCCAATGTTAGATTCTCTAGAAAAGAACAAAATACCTATTAAGCAGATTAAAATTGATGAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGATGAGTTTGCAAACTCTTTANGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTA ] [+] EMBL BX609234 [ ATGTAGCATCGCGTGGGCTGGACTTCCCTAAGGTTAACTGGGTGGTTCAAATTGATTGCCCCGAAGACGTTGCCCAGTACATACATAGAGCCGGACGAACTGCAAGGTTGAATACAAGTGGTGAAAATTTACTCGTTTTGCTCCCGCACGAAGTAGATCCAATGTTAGATTCTCTAGAAAAGAACAAAATACCTATTAAGCAGATTAAAATTGATGAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGACGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTAAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGATGGTGCCCCGGTT] consensusID : consensus_6445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence [GATCGCACGAGGTGTAGCATACATCAAATCAATAGCCCTGATGAAGAATAANTGAAGTGTTTCAATTGCACAATTTAAATTGTAGATGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTCAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGCATGGTGCCCCGGTTAATACAAACGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGTTTAGACTAGAACAACAAGATGCGGATGATNAAAAGCGTTATAAAGCATTAAAGAAAGCAAAAAGGAATGATTATACACAAGAACAGGAACGTAAAAGGCAAGTTGACGATACTTGTGTTCTGGGTGATGATTTTGGGNAG-GAAAGCGAAAATAGCGTTTCTACTTGATTGGGTTACTGATCCGGATAAAGTGTATGGAAAAAGAAATCATAATGGAAAACAAGTAGATTATAAACACGCTTCAGGAAGCTATGATTTTAAAGATACAGTCAAAAGAATACATGTACTTCAAAATGCTCAAGCATTGTCCTTAAATGATACAGAACNACTGGCCATTAATTTGCTAAAATAGTATT] [+] EMBL AL697043 [GATCGCACGAGGTGTAGCATACATCAAATCAATAGCCCTGATGAAGAATAANTGAAGTGTTTCAATTGCACAATTTAAATTGTAGATGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTCAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGCATGGTGCCCCGGTTAATACAAACGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGTTTAGACTAGAACAACAAGATGCGGATGATNAAAAGCGTTATAAAGCATTAAAGAAAGCAAAAAGGAATGATTATACACAAGAACAGGAACGTAAAAGGCAAGTTGACGATACTTGTGTTCTGGGTGATGATTTTGGGNAG GAAAGCGAAAATAGCGTTTCTACTTGATTGGGTTACTGA ] [+] EMBL BX622815 [ TTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTAAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAG ATGGTGCCCCGGTTAATACAAACGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGTTTAGACTAGAACAACAAGATGCGGATGATAAAAAGCGTTATAAAGCATTAAAGAAAGCAAAAA GAATGATTATA A AAGAAAAGGAACGTAAAAGGCAAGTTGACGATTCTTGTGTTCTGGCTGATGATTTT GGCAGCGAAAGCGAAAATAGCGTTTCT CTTGATTGGCTTCCTGATCCGGATAAAGTGTATGGAAAAAGAAATCATAATGGAAAACAAGTAGATTATAAACACGCTTCAGGAAGCTATGATTTTAAAGATACAGTCAAAAGAATACATGTACTTCAAAATGCTCAAGCATTGTCCTTAAATGATACAGAACNACTGGCCATTAATTTGCTAAAATAGTATT] consensusID : consensus_6445#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence [GAATCCCCCGAGGTTAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGATGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTACNAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAANAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGATGGTGCCCCGGTTAATACAAACCGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGGTTTAAGAACTCANAAACCAACCAAGCATGCGGCATGGCATAANACAGCGTTGATTAAGCCATTTANACAGCAAAAGCCAACAACAGCAATGATTATACAACNGAACAGGGAACCGTAAAAGGGCAAGCTTGCACGCATTCTTGGTGTNCTGGCCTGATGCATTCTCTGGCCANCGGAAAAGCGANAATAAGCGTCCTCTTGATNGGCTTCCTGATCCGGCATANAGTGNNTGGCANANACGCANCNA] [+] EMBL AL694901 [GAATCCCCCGAGGTTAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGATGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTACNAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAANAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGATGGTGCCCCGGTTAATACAAACCGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGGTTTAAGAACTCANAAACCAACCAAGCATGCGGCATGGCATAANACAGCGTTGATTAAGCCATTTANACAGCAAAAGCCAACAACAGCAATGATTATACAACNGAACAGGGAACCGTAAAAGGGCAAGCTTGCACGCATTCTTGGTGTNCTGGCCTGATGCATTCTCTGGCCANCGGAAAAGCGANAATAAGCGTCCTCTTGATNGGCTTCCTGATCCGGCATANAGTGNNTGGCANANACGCANCNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6445#1 ------------------------------------------------------------ consensus_6445#2 ------------------------------------------------------------ consensus_6445#0 ATGAACAAATCGCCACACCGGCGAAATTACAGCAAAGCTACGTTGTAGTTGATCTTGCTA 60 consensus_6445#1 ------------------------------------------------------------ consensus_6445#2 ------------------------------------------------------------ consensus_6445#0 ACAAACTGACCATGCTTTGGTCATTCCTGCAAACCCATCCTAAACAAAAAGTTATAGTAT 120 consensus_6445#1 ------------------------------------------------------------ consensus_6445#2 ------------------------------------------------------------ consensus_6445#0 TTTTTTCCACTTGCAAACAGGTGAAATATTTCTACCAGGTATTTAAGAAGCTTCGTCCGA 180 consensus_6445#1 ------------------------------------------------------------ consensus_6445#2 ------------------------------------------------------------ consensus_6445#0 CCTCTTTACTGTTACCATTGTATGGGGGAATGAACCAAGAAAAGCGTAACAAAATATATG 240 consensus_6445#1 ------------------------------------------------------------ consensus_6445#2 ------------------------------------------------------------ consensus_6445#0 GTGATTTTTGCAAAAAGAAAACAAATGTATGCTTGTTAGCCACAGATGTAGCATCGCGTG 300 consensus_6445#1 ------------------------------------------------------------ consensus_6445#2 ------------------------------------------------------------ consensus_6445#0 GGCTGGACTTCCCTAAGGTTAACTGGGTGGTTCAAATTGATTGCCCCGAAGACGTTGCCC 360 consensus_6445#1 ------------------------------------------------------------ consensus_6445#2 ------------------------------------------------------------ consensus_6445#0 AGTACATACATAGAGCCGGACGAACTGCAAGGTTGAATACAAGTGGTGAAAATTTACTCG 420 consensus_6445#1 ------------------------------------------------------------ consensus_6445#2 ------------------------------------------------------------ consensus_6445#0 TTTTGCTCCCGCACGAAGTAGATCCAATGTTAGATTCTCTAGAAAAGAACAAAATACCTA 480 consensus_6445#1 ------------------------------------------------------------ consensus_6445#2 ------GAATCCCCCGAGGTTAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCAC 54 consensus_6445#0 TTAAGCAGATTAAAATTGATGAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCAC 540 consensus_6445#1 ----------------------------GATCGCACGAGG------TGTAGCATACATCA 26 consensus_6445#2 TGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCA 114 consensus_6445#0 TGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCA 600 ** *** * * *** ********** consensus_6445#1 AATCAATAGCCCTGATGAAGAATAANTGAAGTGTTTCAATTGCACAATTTAAATTGTAGA 86 consensus_6445#2 AATCAATAGCCCTGATGAAGAATAAG-GAAGTGTTTCAATTGCACAATTTAAATT-TAGA 172 consensus_6445#0 AATCAATAGCCCTGATGAAGAATAAG-GAAGTGTTTCAATTGCACAATTTAAATT-TAGA 658 ************************* **************************** **** consensus_6445#1 TGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTAC 146 consensus_6445#2 TGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTT-GTTTCTCGTAC 231 consensus_6445#0 TGAGTTTGCAAACTCTTTANGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTAC 718 ******************* **************************** *********** consensus_6445#1 GTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAAT 206 consensus_6445#2 GTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAAT 291 consensus_6445#0 GTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAAT 778 ************************************************************ consensus_6445#1 TACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACG 266 consensus_6445#2 TACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACG 351 consensus_6445#0 TACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACG 838 ************************************************************ consensus_6445#1 AATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAA 326 consensus_6445#2 AATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAA 411 consensus_6445#0 AATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAA 898 ************************************************************ consensus_6445#1 TGTTACTACTGAATCAGAAGATGT-CAAAAAGATACAAAAAAAACGAATATCTAAGGTCA 385 consensus_6445#2 TGTTACTACTGAATCAGAAGATGTACNAAAAGATACAAAAAAAACGAATATCTAAGGTCA 471 consensus_6445#0 TGTTACTACTGAATCAGAAGATGT-AAAAAAGATACAAAAAAAACGAATATCTAAGGTCA 957 ************************ ********************************* consensus_6445#1 AGCTAGTAAA-GAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGCATGGTGC 444 consensus_6445#2 AGCTAGTAANAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAG-ATGGTGC 530 consensus_6445#0 AGCTAGTAAA-GAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAG-ATGGTGC 1015 ********* ***************************************** ******* consensus_6445#1 CCCGGTTAATACAAAC-GGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGT 503 consensus_6445#2 CCCGGTTAATACAAACCGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGG 590 consensus_6445#0 CCCGGTT----------------------------------------------------- 1022 ******* consensus_6445#1 TT---AGACTAGAACAACAAG-----ATGCGG-ATG--ATNAAA-AGCGTT-ATAAAGCA 550 consensus_6445#2 TTTAAGAACTCANAAACCAACCAAGCATGCGGCATGGCATAANACAGCGTTGATTAAGCC 650 consensus_6445#0 ------------------------------------------------------------ consensus_6445#1 TTAAAGAAAGCAAAA---------AGGAATGATTATACACAAGAACAGGAA--CGTAAAA 599 consensus_6445#2 ATTTANACAGCAAAAGCCAACAACAGCAATGATTATACAACNGAACAGGGAACCGTAAAA 710 consensus_6445#0 ------------------------------------------------------------ consensus_6445#1 GG-CAAGTTGACG---ATACTTG-TGTTCTGGG-TGATGATTT---TGG---GNAGGAAA 647 consensus_6445#2 GGGCAAGCTTGCACGCATTCTTGGTGTNCTGGCCTGATGCATTCTCTGGCCANCGGAAAA 770 consensus_6445#0 ------------------------------------------------------------ consensus_6445#1 GCGAAAATAGCGTTTCTACTTGATTGGGTTACTGATCCGG-ATAAAGTGTATGGAAAAAG 706 consensus_6445#2 GCGANAATAA-GCGTCCTCTTGATNGGCTTCCTGATCCGGCATANAGTGNNTGGCANANA 829 consensus_6445#0 ------------------------------------------------------------ consensus_6445#1 AAATCATAATGGAAAACAAGTAGATTATAAACACGCTTCAGGAAGCTATGATTTTAAAGA 766 consensus_6445#2 CGCANCNA---------------------------------------------------- 837 consensus_6445#0 ------------------------------------------------------------ consensus_6445#1 TACAGTCAAAAGAATACATGTACTTCAAAATGCTCAAGCATTGTCCTTAAATGATACAGA 826 consensus_6445#2 ------------------------------------------------------------ consensus_6445#0 ------------------------------------------------------------ consensus_6445#1 ACNACTGGCCATTAATTTGCTAAAATAGTATT 858 consensus_6445#2 -------------------------------- consensus_6445#0 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||