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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1153 fasta sequence
[AGAATCCCCACGAGGTGTNANGGCTCCGCTGCAGGATGTCGCGACGGACTGGAAGGACGAACTTCTATATCCTCAACGCATCCTAAATGCCAAGGGAATTAATCAGCGCAAATTGTACAGCTTTTTCGCCTAACGGGAGAGAATGATATGCGTGATTTCCAGGTTTTTGTTTTCTGCTTCCTGTGCGGAACATGTTTTACATTTCTCTCATATTTTTCATTTAAGTTC----TTTTTTGTACGTATTGAAATCGATTCTTTCTCTCGTGCGTATGTGTGTGTGTGCGCTGCCTTACGCAAAAGTGAAAAGCGATAGATGGGTGGGCTACAGAGAAGAAGGAACACTGTGTTGCAATTAGCTCTTGAAATTTGCTGTCATTAAAATGAACGGGAAAATACGTTGCAAAAAGGGTGTAATGTTGCTTCAATCAATTACTATCACTTTGTTTATTAGATAAAATTTTCTGCTGGTTGTAGTTTTT-CTTTGCTATGAAGTGAATAGGTTTTATTT-TGATACTTCA-GTTATTGGTTCTCCTGTTTTTCGGCTTGCCTATCAGCCGGCAAGTAGTTGATTTGGTGTGAACCTTGTTTTCTGTCCGCTCTTGATATGTTTT-AAAGCAATTTGTTGAAAATCCATCTTTAGGCAGTAATTTAGTTCAATTTTCGGTTGAAACTTTTTTCTTATTATTATTTTTTTTGCTATAATCGTCTGTTACACACTCGTCTAGAGCAATAATCGCTACGGAGCGATGAAAGCATTCTCAATAATTTATTAAGTAAGCAACCATACTCTGTCGCGGACGCGCAATCGTGTGTTCTACAATCAGCTTAAAAATGCCTTTCTTCATATTGTTCATCCTGACGGAGACGTAAGGTTCTCCCCGGCTAGTTGGTAGAGAAAATGATACTTTCATACAGTTAAGCTTAGCACGTAAGACGGCGGAGGTGCGTGCACGCCCGCTTCTCTACGATCCTACCCGGTTGATGATAAAATGGAGTGTTTGGCAAATGTTCTCTTTTATTTTGATTATTGGATTGGATTTAGCATTAGTTGTGTCTAAAATTAAAGCTTAGGTCATAGTAAAATCTAATATCTGCGCATAAAAGTTGGCAAAAGTCATGGGGAGGAATGCGAAGGGGATTGNTCAACCAATAAT]
[+] EMBL BX466490 [AGAATCCCCACGAGGTGTNANGGCTCCGCTGCAGGATGTCGCGACGGACTGGAAGGACGAACTTCTATATCCTCAACGCATCCTAAATGCCAAGGGAATTAATCAGCGCAAATTGTACAGCTTTTTCGCCTAACGGGAGAGAATGATATGCGTGATTTCCAGGTTTTTGTTTTCTGCTTCCTGTGCGGAACATGTTTTACATTTCTCTCATATTTTTCATTTAAGTTC TTTTTTGTACGTATTGAAATCGATTCTTTCTCTCGTGCGTATGTGTGTGTGTGCGCTGCCTTACGCAAAAGTGAAAAGCGATAGATGGGTGGGCTACAGAGAAGAAGGAACACTGTGTTGCAATTAGCTCTTGAAATTTGCTGTCATTAAAATGAACGGGAAAATACGTTGCAAAAAGGGTGTAATGTTGCTTCAATCAATTACTATCACTTTGTTTATTAGATAAAATTTTCTGCTGGTTGTAGTTTTTACTTTGCTATGAAGTGAATAGGTTTNATTTCTGATACTTCAGGTTATTGGTTCTCCTGTTTTTCGGCTTGCCTATCAGCCGGCAAGTAGTTGATTTGGTGTGAACCTTGTTTACTGTCCGCTCTTGATATGTTTTCAAAGCAAT ]
[+] EMBL BM628411 [ ccgGTTTTCTGCTTCCTGTGCGGAACATGTTTTACATTTCTCTCATATTTTTCATTTAAGTTCTTTTTTTTTTGTACGTATTGAAATCGATTCTTTCTCTCGTGTGTATGTGTGTGTGTGCGCTGCCTTACGCAAAAGTGAAAAGCGATAGATGGGTGGGCTACAGAGAAGAAGGAACACTGTGTTGCAATTAGCTCTTGAAATTTGCTGTCATTAAAATGAACGGGAAAATACGTTGCAAAAAGGGTGTAATGTTGCTTCAATCAATTACTATCACTTTGTTTATTAGATAAAA TTTCTGCTGGTTGTAGTTTTT CTTTGCTATGAAGTGAATAGGTTTTTTTT AAATACTTCA GTTATTGGT ]
[+] EMBL BX623114 [ AGGGTGTAATGTTGCTTCAATCAATTACTATCACTTTGTTTATTAGATAAAATTTTCTGCTGGTTGTAGTTTTT CTTTGCTATGAAGTGAATAGGTTTTATTT TGATACTTCA GTTATTGGTTCTCCTGTTTTTCGGCTTGCCTATCAGCCGGCAAGTAGTTGATTTGGTGTGAACCTTGTTTTCTGTCCGCTCTTGATATGTTTT AAAGCAATTTGTTGAAAATCCATCTTTAGGCAGTAATTTAGTTCAATTTTCGGTTGAAACTTTTTTCTTATTATTATTTTTTTTGCTATAATCGTCTGTTACACACTCGTCTAGAGCAATAATCGCTACGGAGCGATGAAAGCATTCTCAATAATTTATTAAGTAAGCAACCATACTCTGTCGCGGACGCGCAATCGTGTGTTCTACAATCAGCTTAAAAATGCCTTTCTTCATATTGTTCATCCTGACGGAGACGTAAGGTTCTCCCCGGCTAGTTGGTAGAGAAAATGATACTTTCATACAGTTAAGCTTAGCACGTAAGACGGCGGAGGTGCGTGCACGCCCGCTTCTCTACGATCCTACCCGGTTGATGATAAAATGGAGTGTTTGGCAAATGTTCTCTTTTATTTTGATTATTGGATTGGATTTAGCATTAGTTGTGTCTAAAATTAAAGCTT ]
[+] EMBL BX626063 [ ggAGTTTTT CTTTGCTATGAAGTGAATAGGTTTTATTT TGATACTTCA GTTATTGGTTCTCCTGTTTTTCGGCTTGCCTATCAGCCGGCAAGTAGTTGATTTGGTGTGAACCTTGTTTTCTGTCCGCTCTTGATATGTTTT AAAGCAATTTGTTGAAAATCCATCTTTAGGCAGTAATTTAGTTCAATTTTCGGTTGAAACTTTTTTCTTATTATTATTTTTTTTGCTATAATCGTCTGTTACACACTCGTCTAGAGCAATAATCGCTACGGAGCGATGAAAGCATTCTCAATAATTTATTAAGTAAGCAACCATACTCTGTCGCGGACGCGCAATCGTGTGTTCTACAATCAGCTTAAAAATGCCTTTCTTCATATTGTTCATCCTGACGGAGACGTAAGGTTCTCCCCGGCTAGTTGGTAGAGAAAATGATACTTTCATACAGTTAAGCTTAGCACGTAAGACGGCGGAGGTGCGTGCACGCCCGCTTCTCTACGATCCTACCCGGTTGATGATAAAATGGAGTGTTTGGCAAATGTTCTCTTTTATTTTGATTATTGGATTGGATTTAGCATTAGTTGTGTCTAAAATTAAAGCTTAGGTCATAGTAAAATCTAATATCTGCGCATAAAAGTTGGCAAAAGTCATGGGGAGGAATGCGAAGGGGATTGNTCAACCAATAAT]
consensusID : consensus_6447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence
[GCCAGCATCCCCGGTAATCTTTTTTTGTCGTATTGATCGATTCTTTCTCTCGTGCGTATGTGTGTGTGTGCGCTGCTTACGCAAAAGTGAAAAGCGATAGATGGGTGGGCTACAGAGAAGAAGGAACACTGTGTTGCAATTAGCTCTTGAANTTTGCTGTCNTTAAAATGAACGGGAANATACGTTGCAANANGGGTGTAACTGTGCTTCAATCAAACTATCACTTGTTATAAAATCTGTGGGTAGAGACNGCCCTGACTGNCTAGAAGAACCTTTCNNANCTATAGGTATACTCCCGGTAATACGGATAGGCCTAATCANCGGGCAAGANAACTCAGCATACGNTGCNGAAACCTAGNTNATACTAGAACNNACCTAGATATGNATACACAGCANANCAGANAGGAAAAACCNNATCAANAAAGAGCACAAATTCTACGTCAAATAATACGGGTGGAAAGNAAGTAGGAAAATAANAGAAATCATGTAGGNATAATCGANNATGGTAACAACANGATGTAAGCAAAAATGAGAAAAGAANAGAAAGGAAAGAANANACTNAAAAAACTAAAAANCAACANAAAAGAAACANAGANNCAGAATGAAGAGNGNACCAAACGAGAGGAACAANGCAAANACCAAAACAAACAGACANTACCGAGCAAGAGGTCAAACCNANGNGNGACCGANCAGAGCNTTCANCCNCGCCCACACNGGACNCAGNACAACNAANCGCANCACCACANTCCNCCAC]
[+] EMBL AL694919 [GCCAGCATCCCCGGTAATCTTTTTTTGTCGTATTGATCGATTCTTTCTCTCGTGCGTATGTGTGTGTGTGCGCTGCTTACGCAAAAGTGAAAAGCGATAGATGGGTGGGCTACAGAGAAGAAGGAACACTGTGTTGCAATTAGCTCTTGAANTTTGCTGTCNTTAAAATGAACGGGAANATACGTTGCAANANGGGTGTAACTGTGCTTCAATCAAACTATCACTTGTTATAAAATCTGTGGGTAGAGACNGCCCTGACTGNCTAGAAGAACCTTTCNNANCTATAGGTATACTCCCGGTAATACGGATAGGCCTAATCANCGGGCAAGANAACTCAGCATACGNTGCNGAAACCTAGNTNATACTAGAACNNACCTAGATATGNATACACAGCANANCAGANAGGAAAAACCNNATCAANAAAGAGCACAAATTCTACGTCAAATAATACGGGTGGAAAGNAAGTAGGAAAATAANAGAAATCATGTAGGNATAATCGANNATGGTAACAACANGATGTAAGCAAAAATGAGAAAAGAANAGAAAGGAAAGAANANACTNAAAAAACTAAAAANCAACANAAAAGAAACANAGANNCAGAATGAAGAGNGNACCAAACGAGAGGAACAANGCAAANACCAAAACAAACAGACANTACCGAGCAAGAGGTCAAACCNANGNGNGACCGANCAGAGCNTTCANCCNCGCCCACACNGGACNCAGNACAACNAANCGCANCACCACANTCCNCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6447#0 AGAATCCCCACGAGGTGTNANGGCTCCGCTGCAGGATGTCGCGACGGACTGGAAGGACGA 60
consensus_6447#1 ------------------------------------------------------------
consensus_6447#0 ACTTCTATATCCTCAACGCATCCTAAATGCCAAGGGAATTAATCAGCGCAAATTGTACAG 120
consensus_6447#1 ------------------------------------------------------------
consensus_6447#0 CTTTTTCGCCTAACGGGAGAGAATGATATGCGTGATTTCCAGGTTTTTGTTTTCTGCTTC 180
consensus_6447#1 ------------------------------------------------------------
consensus_6447#0 CTGTGCGGAACATGTTTTACATTTCTCTCATATTTTTCATTTAAGTTCTTTTTTGTACGT 240
consensus_6447#1 -------------------------GCCAGCATCCCCGGT---AATCTTTTTTTGT-CGT 31
* ** * * * ******** ***
consensus_6447#0 ATTGAAATCGATTCTTTCTCTCGTGCGTATGTGTGTGTGTGCGCTGCCTTACGCAAAAGT 300
consensus_6447#1 ATTGA--TCGATTCTTTCTCTCGTGCGTATGTGTGTGTGTGCGCTGC-TTACGCAAAAGT 88
***** **************************************** ************
consensus_6447#0 GAAAAGCGATAGATGGGTGGGCTACAGAGAAGAAGGAACACTGTGTTGCAATTAGCTCTT 360
consensus_6447#1 GAAAAGCGATAGATGGGTGGGCTACAGAGAAGAAGGAACACTGTGTTGCAATTAGCTCTT 148
************************************************************
consensus_6447#0 GAAATTTGCTGTCATTAAAATGAACGGGAAAATACGTTGCAAAAAGGGTGTAATGTTGCT 420
consensus_6447#1 GAANTTTGCTGTCNTTAAAATGAACGGGAANATACGTTGCAANANGGGTGTAACTGTGCT 208
*** ********* **************** *********** * ******** ****
consensus_6447#0 TCAATCAATTACTATCACTTTGTTTATTAGATAAAATTTTCTGCTGGTTGTAGTTTTTCT 480
consensus_6447#1 TCAATCAA--ACTATCACTT-GTT------ATAAAATCTGTGGGTAGAGACNGCCCTGAC 259
******** ********** *** ******* * * * * * *
consensus_6447#0 TTGCTATGA-AGTGAATAGGTTTTATTTTGATACTTCAGTTATT---GGTTCTCCTGTTT 536
consensus_6447#1 TGNCTAGAAGAACCTTTCNNANCTATAGGTATACTCCCGGTAATACGGATAGGCCTAATC 319
* *** * * * *** ***** * * ** * * * *** *
consensus_6447#0 TTCGGCTTGCCTA--TCAGCCGGCAAGTAGTTGATTTGGTGTGAACCTTGTTTTCTGTCC 594
consensus_6447#1 ANCGGGCAAGANAACTCAGCATACGNTGCNGAAACCTAGN-TNATACTAGAACNNACCTA 378
*** * ***** * * * * * * ** *
consensus_6447#0 GCTCTTGATATGTTTTAAAGCAATTTGTTGAAAATCCATCTTTAGGCAGTAA----TTTA 650
consensus_6447#1 GATATGNATACACAGCANANCAGANAGGAAAAACCNNATCAANAAAGAGCACAAATTCTA 438
* * * *** * * ** * *** *** * ** * * **
consensus_6447#0 GTTCAATT--TTCGGTTGAAACTTTTTTCTTATTATTAT-----TTTTTTTGCTATAATC 703
consensus_6447#1 CGTCAAATAATACGGGTGGAAAGNAAGTAGGAAAATAANAGAAATCATGTAGGNATAATC 498
**** * * *** ** ** * * ** * * * * * ******
consensus_6447#0 GTCTGTTACAC--ACTCGTCTAGAGCAATAATCGCTACGGAGC-GATGAAAGCATTCTCA 760
consensus_6447#1 GANNATGGTAACAACANGATGTAAGCAAAAATGAGAAAAGAANAGAAAGGAAAGAANANA 558
* * * ** * ***** *** * ** ** * *
consensus_6447#0 ATAATTTATTAAGTAAGCAACCATACTCTGTCGCGGACGCGCAATCGTGTGTTCTACAAT 820
consensus_6447#1 CTNAAAAAACTAAAAANCAACANAAAAGAAACANAGANNCAGAATGAAGAGNGNACCAAA 618
* * * * ** **** * * ** * *** * * ***
consensus_6447#0 C-AGCTTAAAAATGCCTTTCTTCATATTGTTCATCCTGACGGAGACGTAAGGTTCTCCCC 879
consensus_6447#1 CGAGAGGAACAANGCAAANACCAAAACAAACAGACANTACCGAG-CAAGAGGTCAAACCN 677
* ** ** ** ** * * * ** *** * **** **
consensus_6447#0 GGCTAGTTGGTAGAGAAAATGATACTTTCATACAGTTAAGCTTAGCACGTAAGACGGCGG 939
consensus_6447#1 AN------GNGNGACCGANCAGAGCNTTCANCCNCGCCCACACNGGACNCAGNACAACNA 731
* ** * * **** * * * ** * ** *
consensus_6447#0 AGGTGCGTGCACGCCCGCTTCTCTACGATCCTACCCGGTTGATGATAAAATGGAGTGTTT 999
consensus_6447#1 AN---CGCANCACCACANTCCNCCAC---------------------------------- 754
* ** * * * * * **
consensus_6447#0 GGCAAATGTTCTCTTTTATTTTGATTATTGGATTGGATTTAGCATTAGTTGTGTCTAAAA 1059
consensus_6447#1 ------------------------------------------------------------
consensus_6447#0 TTAAAGCTTAGGTCATAGTAAAATCTAATATCTGCGCATAAAAGTTGGCAAAAGTCATGG 1119
consensus_6447#1 ------------------------------------------------------------
consensus_6447#0 GGAGGAATGCGAAGGGGATTGNTCAACCAATAAT 1153
consensus_6447#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||