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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCAGGTAGAACGAACGGAGTAGCGCTTGATTGCGTTCGCTTCATGGTTTTGGGATGCATTTATGTAGGGAAAATGGAAGATGTTGGAAGAAGCAAATTGCGGCGAAGCAAGAGGACTGGCGCTAGACGAGCCAGTCGGAGGTTACGAGGTTTACCGTGCATTATTGCATTGTTGGTTGAGCGAAGCGGGATTGTAGAAATGCTTACGATTGATCGCTTTTTTACCGCTTATTTCCGTATCCTTTGCCGGTTTGCTTCCCACTCGAAGTTTGCGCAAACCGGAGATTGATGTTCGGTTGGGTTTACCGCGAACGTTCGGTAGCTCGGCTATCCTCCCATGAGAATCCTAAAAAGAAACAAAACATCCCCAAAATACACAGTTGGTGGATCAAATAGAGAGAGACAAAGAAAAGAAAAAAAAAAAAACAAACCAAAACCACTCCTACGGAAACGTTCTCACAGAACGGACGGCAACGATGTTGCCGAATGTTGCAGACGCAAGCTTTATGAGAAACAGAGAAAGAAAGAGGAAAACAAACTTACATACCTATGCTTTATGGTTTTAACAAAACAAAACCCCCCCTTTGTTTGTGTTAAACCACAACCTAGCTTTCAATGCGAAAGAAGCCAAGAGCCGCGGAGACGAGGCGGGATGGCATTTGGAATGAAAGAATTACATACACAATTTACATAACTACACGATATTAAATAAGCAGTTTATTGATCATACATGTAAACGTTAGTGGACTTAGAGTTTCAAACAAAAAAATGTTTCTTAAACTACAAGCGAATGAAAAATGGCGGGAGACAAGAAAACACAAAACCACATCACACATTATACACAGCAACACACACATACACAGCACAAGATAGTAAATGTTTATACATCGGCAGAAGGATACATAGCAAAGCGTGGAAACTTCGCACTGTGAACGGCAAAACACNTGAACTAAACAAACCAAACAACTGGACNACACTTACTT]
[+] EMBL BM627049 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGGTAGAACGAACGGAGTAGCGCTTGATTGCGTTCGCTTCATGGTTTTGGGATGCATTTATGTAGGGAAAATGGAAGATGTTGGAAGAAGCAAATTGCGGCGAAGCAAGAGGACTGGCGCTAGACGAGCCAGTCGGAGGTTACGAGGTTTACCGTGCATTATTGCATTGTTGGTTGAGCGAAGCGGGATTGTAGAAATGCTTACGATTGATCGCTTTTTTACCGCTTATTTCCGTATCCTTTGCCGGTTTGCTTCCCACTCGAAGTTTGCGCAAACCGGAGATTGATGTTCGGTTGGGTTTACCGCGAACGTTCGGTAGCTCGGCTATCCTCCCATGAGAATCCTAAAAAGAAACAAAACATCCCCAAAATACACAGTTGGTGGATCAAATAGAGAGAGACAAAGAAAAGAAAAAAAAAAAAACAAAACAAAACCACTCCTACGGAAACGTTCTCACAGAACGGACGGCAACGATGTTGCCGAATGTTGCAGACGCAAGCTTTATG GAAACAGAGAAAGAAAGAGGAAAACAAACTTACATACCTATGCTTTATGGTTTTAACAAAACAAAAACCCCCCTTTGTTTGTGTTAATCCACAACCTAGCTTTCAATGCGAA ]
[+] EMBL BX607131 [ gtGAAGCAAGAGGACTGGCGCTAGACGAGCCAGTCGGAGGTTACGAGGTTTACCGTGCATTATTGCATTGTTGGTTGAGCGAAGCGGGATTGTAGAAATGCTTACGATTGAACGCTTTTTTACCGCTTATTTCCGTATCCTTTGCCGGTTTGCTTCCCACTCGAAGTTTGCGCAAACCGGAGATTGATGTTCGGTTGGGTTTACCGCGAACGTTCGGTAGCTCGGCTATCCTCCCATGAGAATCCTAAAAAGAATCAAAACATCCCCAAAATACACAGTTGGTGGATCAAATAGAGAGAGACAAAGAAAAG AAAAAAAAAACAAACCAAAACCACTCCTACGGAAACGTTCTCACAGAACGGACGGCAACGATGTTGCCGAATGTTGCAGACGCAAGCTTTATGAGAAACAGAGAAAGAAAGAGGAAAACAAACTTACATACCTATGCTTTATGGTTTTAACAAAACAAAACCCCCCCTTTGTTTGTGTTAAACCACAACCTAGCTTTCAATGCGAAAGAAGCCAAGAGCCGCGGAGACGAGGCGGGATGGCATTTGGAATGAAAGAATTAC ]
[+] EMBL BX627569 [ AAACCAAAACCACTCCTACGGAAACGTTCTCACAGAACGGACGGCAACGATGTTGCCGAATGTTGCAGACGCAAGCTTTATGAGAAACAGAGAAAGAAAGAGGAAAACAAACTTACATACCTATGCTTTATGGTTTTAACAAAACAAAACCCCCCCTTTGTTTGTGTTAAACCACAACCTAGCTTTCAATGCGAAAGAAGCCAAGAGCCGCGGAGACGAGGCGGGATGGCATTTGGAATGAAAGAATTACATACACAATTTACATAACTACACGATATTAAATAAGCAGTTTATTGATCATACATGTAAACGTTAGTGGACTTAGAGTTTCAAACAAAAAAATGTTTCTTAAACTACAAGCGAATGAAAAATGGCGGGAGACAAGAAAACACAAAACCACATCACACATTATACACAGCAACACACACATACACAGCACAAGATAGTAAATGTTTATACATCGGCAGAAGGATACATAGCAAAGCGTGGAAACTTCGCACTGTGAACGGCAAAACACNTGAACTAAACAAACCAAACAACTGGACNACACTTACTT]
consensusID : consensus_6449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[AGAATCGCCCGAGGTTATAGTAATGTTTATACATCGGCAGAAGGATACATAGCCAAGCGTGGAAACTTCGTACTGTGAATGGCAAAACACATGAACTAAACGAAACAAAACAACTGGACAACACTTACTTGCATCCAAAACTCACACATTTGAAAAAGAATTAAAAAAACACACACACGGAAAACCAATGGTACCAATTTTGAAAAAGGTTGTGCAAAGTAAACAAATGAAACAAGCAACAAGAAAAAAAACAAAACAAAAGAAGTAAACTACACACCCACAACACAACAACAAAACCTCCCATGTAGGGGAAAATCTGCTGATCTTGATCTTTGTGCTAAGCCACGCCATTTCTATAGTGAACGTGATGACACGTGGGAGACACAGCCACAGTCGCAACAACCAACCCACAAACATACGCATATATCTGTACACTCAAACACCACCACACACATACACGATTTGAAATCTATGGGCTTACAGACAGGGATAATGGTGGCGGTGGTGGTGGTGTGGCGTTGGTGGCGCCGCTCCCTTCGGTCGGATCCTTCTGCTTAAACAAGGG]
[+] EMBL AL931734 [AGAATCGCCCGAGGTTATAGTAATGTTTATACATCGGCAGAAGGATACATAGCCAAGCGTGGAAACTTCGTACTGTGAATGGCAAAACACATGAACTAAACGAAACAAAACAACTGGACAACACTTACTTGCATCCAAAACTCACACATTTGAAAAAGAATTAAAAAAACACACACACGGAAAACCAATGGTACCAATTTTGAAAAAGGTTGTGCAAAGTAAACAAATGAAACAAGCAACAAGAAAAAAAACAAAACAAAAGAAGTAAACTACACACCCACAACACAACAACAAAACCTCCCATGTAGGGGAAAATCTGCTGATCTTGATCTTTGTGCTAAGCCACGCCATTTCTATAGTGAACGTGATGACACGTGGGAGACACAGCCACAGTCGCAACAACCAACCCACAAACATACGCATATATCTGTACACTCAAACACCACCACACACATACACGATTTGAAATCTATGGGCTTACAGACAGGGATAATGGTGGCGGTGGTGGTGGTGTGGCGTTGGTGGCGCCGCTCCCTTCGGTCGGATCCTTCTGCTTAAACAAGGG]
consensusID : consensus_6449#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[CCGCTTTTTACATCGTTATATGCAGTTGTATGCGCATTTTGCTGGCTGACAAAGCTGGTTGCAGCAAAGGCTAGTCGCTTTAAAAAACACACAGGTAGAACGAACGGAGTAGCGCTTGATTGCGTTCGCTTCATGGTTTTGGGATGCATTTATGTAGGGAAAATGGAAGATGTTGGAAGAAGCAAATTGCGGCGAAGCAAGAGGACTGGCGCTAGACGAGCCAGTCGGAGGTTACGAGGTTTACCGTGCATTATTGCATTGTTGGTTGAGCGAAGCGGGATTGTAGAAATGCTTACGATTGATCGCTTTTTTACCGCTTATTTCCGTATCCTTTGCCGGTTTGCTTCCCACTCGAAGTTTGCGCAAACCGGAGATTGATGTTCGGTTGGGTTTACCGCGAACGTTCGGTAGCTCGGCTATCCTCCCATGAGAATCCTAAAAAGAAACAAAACATCCCCAAAATACACAGTTGGTGGATCAAATAGAGAGAGACAAAGAAAAGAAAAAAAAAAAAAACAAAACAAAACCACTCCTACGGAAACGTTCTCACAGAACGGACGGCA]
[+] EMBL BM638712 [CCGCTTTTTACATCGTTATATGCAGTTGTATGCGCATTTTGCTGGCTGACAAAGCTGGTTGCAGCAAAGGCTAGTCGCTTTAAAAAACACACAGGTAGAACGAACGGAGTAGCGCTTGATTGCGTTCGCTTCATGGTTTTGGGATGCATTTATGTAGGGAAAATGGAAGATGTTGGAAGAAGCAAATTGCGGCGAAGCAAGAGGACTGGCGCTAGACGAGCCAGTCGGAGGTTACGAGGTTTACCGTGCATTATTGCATTGTTGGTTGAGCGAAGCGGGATTGTAGAAATGCTTACGATTGATCGCTTTTTTACCGCTTATTTCCGTATCCTTTGCCGGTTTGCTTCCCACTCGAAGTTTGCGCAAACCGGAGATTGATGTTCGGTTGGGTTTACCGCGAACGTTCGGTAGCTCGGCTATCCTCCCATGAGAATCCTAAAAAGAAACAAAACATCCCCAAAATACACAGTTGGTGGATCAAATAGAGAGAGACAAAGAAAAGAAAAAAAAAAAAAACAAAACAAAACCACTCCTACGGAAACGTTCTCACAGAACGGACGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6449#0 ------------------------------------------------------------
consensus_6449#2 CCGCTTTTTACATCGTTATATGCAGTTGTATGCGCATTTTGCTGGCTGACAAAGCTGGTT 60
consensus_6449#1 -----------AGAATCGCCCGAGGTTATA-GTAATGTTTATACATCGGCAGAAGGATAC 48
consensus_6449#0 -CCGCCCACGC-GTCCGCCC--ACGCGTCCGCAGGTAGAACGAACGGAGTAGCGCTTGAT 56
consensus_6449#2 GCAGCAAAGGCTAGTCGCTTTAAAAAACACACAGGTAGAACGAACGGAGTAGCGCTTGAT 120
consensus_6449#1 ATAGCCAAGCGTGGAAACTTCGTACTGTGAAT-GGCAAAACACATGAACTAA--ACGAAA 105
** * * ** * *** * * * ** *
consensus_6449#0 TGCGTTCGCTTCATGGTTTTGGGATGCATTTATG--TAGGGAAAATGGAAGATGTTGGAA 114
consensus_6449#2 TGCGTTCGCTTCATGGTTTTGGGATGCATTTATG--TAGGGAAAATGGAAGATGTTGGAA 178
consensus_6449#1 CAAAACAACTGGACAACACTTACTTGCATCCAAAACTCACACATTTGAAAAAGAATTAAA 165
** * * ***** * * * ** ** * * **
consensus_6449#0 GAAGCAAAT-TGCGGCGAAGCAAGAGGACTGGCGCTAGACGAGCCAGTCGGAGGTTACGA 173
consensus_6449#2 GAAGCAAAT-TGCGGCGAAGCAAGAGGACTGGCGCTAGACGAGCCAGTCGGAGGTTACGA 237
consensus_6449#1 AAAACACACACACGGAAAACCAATGGTACCAATTTTGAAAAAGGTTGTGCAAAGTAAACA 225
** ** * *** ** *** * ** * * ** ** * ** * *
consensus_6449#0 GGTTTACCGTGCATTATTGCATTGTTGGTTGAGCGAAGCGGGATTGTAGAAATGCTTACG 233
consensus_6449#2 GGTTTACCGTGCATTATTGCATTGTTGGTTGAGCGAAGCGGGATTGTAGAAATGCTTACG 297
consensus_6449#1 AATGAAACAAGCAACA--AGAAAAAAAACAAAACAAAA-GAAGTAAACTACACACCCACA 282
* * * *** * * * * ** * * * * * **
consensus_6449#0 ATTGATCGCTTTTTTACCGCTTATTTCCGT-ATCCTTTGCCGGT-TTGCTTCCCACTCGA 291
consensus_6449#2 ATTGATCGCTTTTTTACCGCTTATTTCCGT-ATCCTTTGCCGGT-TTGCTTCCCACTCGA 355
consensus_6449#1 AC--ACAACAACAAAACCTCCCATGTAGGGGAAAATCTGCTGATCTTGATCTTTGTGCTA 340
* * * *** * ** * * * * *** * * *** * * *
consensus_6449#0 AGTTTGCGCAAACCGGAGATTGATGTTCGGTTGGGTTTACCGCGAACGTTCGGTAGCT-C 350
consensus_6449#2 AGTTTGCGCAAACCGGAGATTGATGTTCGGTTGGGTTTACCGCGAACGTTCGGTAGCT-C 414
consensus_6449#1 AGCCACGCCATTTCTATAGTGAACGTGATGACACGTGGGAGACACAGCCACAGTCGCAAC 400
** ** * * * ** * ** * * * ** ** *
consensus_6449#0 GGCTATCCTCCCATGAGAATCCTAAAAAGAAACAAAACATCCCCAAAATACACAGTTGGT 410
consensus_6449#2 GGCTATCCTCCCATGAGAATCCTAAAAAGAAACAAAACATCCCCAAAATACACAGTTGGT 474
consensus_6449#1 AACCAACCCACAAACATACGCATATATCTGTACACTCAAACACCACCACACACATACACG 460
* * ** * * * * * ** * *** * * *** * *****
consensus_6449#0 GGATCAAATAGAGAGAGACAAAGAAAAGAAAAAAAAAAAAA-CAA-ACCAAAACCACTCC 468
consensus_6449#2 GGATCAAATAGAGAGAGACAAAGAAAAGAAAAAAAAAAAAAACAA-AACAAAACCACTCC 533
consensus_6449#1 ATTTGAAATCTATGGGCTTACAGACAGGGATAATGGTGGCGGTGGTGGTGGTGTGGCGTT 520
* **** * * * *** * * * ** *
consensus_6449#0 TACGGAAACGTTCTCACAGAACGGACGGCAACGATGTTGCCGAATGTTGCAGACGCAAGC 528
consensus_6449#2 TACGGAAACGTTCTCACAGAACGGACGGCA------------------------------ 563
consensus_6449#1 GGTGGCGCCGCTCCCTTCGGTCGGATCCTTCTGCTTAAACAAGGG--------------- 565
** ** ** * * ****
consensus_6449#0 TTTATGAGAAACAGAGAAAGAAAGAGGAAAACAAACTTACATACCTATGCTTTATGGTTT 588
consensus_6449#2 ------------------------------------------------------------
consensus_6449#1 ------------------------------------------------------------
consensus_6449#0 TAACAAAACAAAACCCCCCCTTTGTTTGTGTTAAACCACAACCTAGCTTTCAATGCGAAA 648
consensus_6449#2 ------------------------------------------------------------
consensus_6449#1 ------------------------------------------------------------
consensus_6449#0 GAAGCCAAGAGCCGCGGAGACGAGGCGGGATGGCATTTGGAATGAAAGAATTACATACAC 708
consensus_6449#2 ------------------------------------------------------------
consensus_6449#1 ------------------------------------------------------------
consensus_6449#0 AATTTACATAACTACACGATATTAAATAAGCAGTTTATTGATCATACATGTAAACGTTAG 768
consensus_6449#2 ------------------------------------------------------------
consensus_6449#1 ------------------------------------------------------------
consensus_6449#0 TGGACTTAGAGTTTCAAACAAAAAAATGTTTCTTAAACTACAAGCGAATGAAAAATGGCG 828
consensus_6449#2 ------------------------------------------------------------
consensus_6449#1 ------------------------------------------------------------
consensus_6449#0 GGAGACAAGAAAACACAAAACCACATCACACATTATACACAGCAACACACACATACACAG 888
consensus_6449#2 ------------------------------------------------------------
consensus_6449#1 ------------------------------------------------------------
consensus_6449#0 CACAAGATAGTAAATGTTTATACATCGGCAGAAGGATACATAGCAAAGCGTGGAAACTTC 948
consensus_6449#2 ------------------------------------------------------------
consensus_6449#1 ------------------------------------------------------------
consensus_6449#0 GCACTGTGAACGGCAAAACACNTGAACTAAACAAACCAAACAACTGGACNACACTTACTT 1008
consensus_6449#2 ------------------------------------------------------------
consensus_6449#1 ------------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||