These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [CNNGGTTATCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCGCGGTGGTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCGAAACAGGGTTACAGGTTAGTTTGCGCTTTCTTCTTTTGGACTACACCAGCAGCAGTAGTTATTGTTACCCACATCATCATCATCATCATCATCATCATCAAAACATTATCATCACATTACCGTCAACTTCGTCATTTACATACCAGTTGNCAGTGTNNGTGCGCTTGTGCTTGCGGTTGGATGGCTGTGCGAATTTTGCACTACTTGGTGTGCCCGGAAAGGGATACGAAATTGAAGAAAATTAGACAATATGACGACCTACAAATCTGTGCGCGGAACCCCGCGAAACGCACGGTCGCTTGTCCACGTGTCGCAATGGGGAGTTCCCTCCCCTTAGTAACTTTTGAGTGTATGGAGGGGGTTTTCAAGCAGATGCGTTGAAGCCTGGTACATACTTCTTTACTCCCTCATACACCAACATATGTTGC] [+] EMBL AL694947 [CNNGGTTATCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCGCGGTGGTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCGAAACAGGGTTACAGGTTAGTTTGCGCTTTCTTCTTTTGGACTACACCAGCAGCAGTAGTTATTGTTACCCACATCATCATCATCATCATCATCATCATCAAAACATTATCATCACATTACCGTCAACTTCGTCATTTACATACCAGTTGNCAGTGTNNGTGCGCTTGTGCTTGCGGTTGGATGGCTGTGCGAATTTTGCACTACTTGGTGTGCCCGGAAAGGGATACGAAATTGAAGAAAATTAGACAATATGACGACCTACAAATCTGTGCGCGGAACCCCGCGAAACGCACGGTCGCTTGTCCACGTGTCGCAATGGGGAGTTCCCTCCCCTTAGTAACTTTTGAGTGTATGGAGGGGGTTTTCAAGCAGATGCGTTGAAGCCTGGTACATACTTCTTTACTCCCTCATACACCAACATATGTTGC] consensusID : consensus_6456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 713 fasta sequence [CCGCCCACGCGTCCGGCCG-AGACGGTCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGGCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAATAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCATTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTGCATG-CGATGTCGGGTGGAGTACACAACGCCCTC] [+] EMBL BM647797 [CCGCCCACGCGTCCGGCGA AGACGGTCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCGCGGTGGTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGGCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAATAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCATTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTAT ] [+] EMBL BM654380 [ CCGAAGACGGTCGCCGTCAGACGCCGGGT CTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGCCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCTAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAATAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCATTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTGCATGACGATGTCGGGTGGAGTACACAACGCCCTC] [+] EMBL BM637200 [ CCG AGACGGTCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGGCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAACAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCGTTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTGCATG CGATGTCGGGTGGAGTA ] [+] EMBL BM584008 [ ccgGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGGCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAACAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCGTTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTGCATG CGATGTCGGGTGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6456#0 -----------------CNNGGTTATCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTT 43 consensus_6456#1 CCGCCCACGCGTCCGGCCGAGACGGTCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTT 60 * * *********************************** consensus_6456#0 TGTTGTGTGTTGGAGCGATCGCGCGGTGGTCACGTTAGCCAGTCTTCCTTCAACCGTACG 103 consensus_6456#1 TGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACG 120 ********************** ***** ******************************* consensus_6456#0 AAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGT 163 consensus_6456#1 AAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGT 180 ************************************************************ consensus_6456#0 TGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATC 223 consensus_6456#1 TGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATC 240 ************************************************************ consensus_6456#0 CCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGT 283 consensus_6456#1 CCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGT 300 ************************************************************ consensus_6456#0 GGCC-GAAACAGGGTTACAGGTTAGTTTGCGCTTTCTTCTTTTGGACTACACCAGCAGCA 342 consensus_6456#1 GGCCCGAAACAGGGTTACAG---------------TATTATCAAGATGCCTTCGGAGGAA 345 **** *************** * * ** * * * * * consensus_6456#0 GTAGTTATTGTTACCCACATCATCATCATCATCATCATCATCATCAAAACATTATCATCA 402 consensus_6456#1 GGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGA--AGCGCAAGGTCAGCATCATCA 403 * * ** **** ** * * ** * * * * ** ******* consensus_6456#0 CATTACCGTCAACTTCGTCATTTACATACCAGTTGNCAGTGTNNGTGCGCTTGTGCTTGC 462 consensus_6456#1 CCGAACCGG-----TCGTCG----------AGCGATTAGGTCACGATAATTTGGGCTTTG 448 * **** ***** ** ** * *** **** consensus_6456#0 GGTTGGATGGCTGTGCGAATTTTGCACTACTTGGTGTGCCCGGAAAGGGATACGAAATTG 522 consensus_6456#1 AGCAGAACAAACGCA-AAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGA 507 * * * * *** * *** * * * * ** * ** consensus_6456#0 AAGAAAATTAGACAATATGACGACCTACAAATCTGTGCGCGGAACCCCGCGAAACGC-AC 581 consensus_6456#1 AGGAAAAGTAACCTGCACAATAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTAC 567 * ***** ** * * * ** * ** * ** * * *** ** consensus_6456#0 GGTCGCTTGTCCACGTGTCGCAATGGGGAGTTCCCTCCCCTTAGTAACTTTTGAGTGTAT 641 consensus_6456#1 AATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCATTC-TCGGAGGCGCTGGAAAAGAT 626 * ** * * **** ** * * * * * * ** ** consensus_6456#0 GGAGGGGGTTTTCAAGCAGATGCGTTGAAGCCTGGTACATACTTCTTTACTCCCTCATAC 701 consensus_6456#1 CGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTG-CATGC 685 ** * * * * * ** * * * * ** ** *** * consensus_6456#0 ACCAACATATGTTGC------------- 716 consensus_6456#1 GATGTCGGGTGGAGTACACAACGCCCTC 713 * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||