cluster # 646

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Anopheles gambiae
cluster # 646 cluster # 646 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_646#0 length = 941 sequences # 1

consensus_646#1 length = 705 sequences # 1

consensusID : consensus_646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 941
fasta sequence

                              [GCAAGAATCGGCACGATGGATGGTAGTGTAAGTGGTTTGAANATTGGTTTGTGACATAATGTCAAAGACCCGTCGGGATTGATGAGAAGAAAATATTGTCATTGTTGTGCCAAAGAACAAACAAAAAAAAAAACTAAATGGTAATTTTTTCCAAGTATTGTGTAAAAAATTTTTCTTTGTCTAAAAAATGCAAAAAAAATGCTGAAAAGTACTAAAAAAAATTGTCTGCATGAATCGTATTACTTGACAAATGTCGAGAATACAAAGCACCTAACATTTTGAAAAGTATCTCTTTATGTCCAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATCGATCTCACCCGAATAATACAATAACACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTATTTTAATTATGTATTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTNTGTTTGAGAAACAATNATTTGAATTGGCCTTAAATTTTAGCATTTCGCGGTTTGATCGTATGATCTGAAAACGGCTTTTNTCAAAGTATTATCCTCAGGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCTTAACAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTCGTNCTGGCTAAAACAACTTATCATTACACTTTACGCGTATAGTCCAGGTTACCGTGGAGGACTTGAGAGTGAACAAACAGGCGTAACATTAGATTCCAGGGATGTACCCCCACCATTTTCCCAGTATTCTTTCCGGAAAACCCAAATTGGNTATCCCGATTCTTGACACACGGTTAACCTGCTTACAACTTTTCGACANACTCTGTTACTCCTTGAGTAACNCCTCCTATTAACCCCAGAAAAAGCGCTTACACTTNGGGAAACCACAAACCCGCTACCAATAAAGCAC]

[+] EMBL BX467832             [GCAAGAATCGGCACGATGGATGGTAGTGTAAGTGGTTTGAANATTGGTTTGTGACATAATGTCAAAGACCCGTCGGGATTGATGAGAAGAAAATATTGTCATTGTTGTGCCAAAGAACAAACAAAAAAAAAAACTAAATGGTAATTTTTTCCAAGTATTGTGTAAAAAATTTTTCTTTGTCTAAAAAATGCAAAAAAAATGCTGAAAAGTACTAAAAAAAATTGTCTGCATGAATCGTATTACTTGACAAATGTCGAGAATACAAAGCACCTAACATTTTGAAAAGTATCTCTTTATGTCCAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATCGATCTCACCCGAATAATACAATAACACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTATTTTAATTATGTATTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTNTGTTTGAGAAACAATNATTTGAATTGGCCTTAAATTTTAGCATTTCGCGGTTTGATCGTATGATCTGAAAACGGCTTTTNTCAAAGTATTATCCTCAGGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCTTAACAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTCGTNCTGGCTAAAACAACTTATCATTACACTTTACGCGTATAGTCCAGGTTACCGTGGAGGACTTGAGAGTGAACAAACAGGCGTAACATTAGATTCCAGGGATGTACCCCCACCATTTTCCCAGTATTCTTTCCGGAAAACCCAAATTGGNTATCCCGATTCTTGACACACGGTTAACCTGCTTACAACTTTTCGACANACTCTGTTACTCCTTGAGTAACNCCTCCTATTAACCCCAGAAAAAGCGCTTACACTTNGGGAAACCACAAACCCGCTACCAATAAAGCAC]




>consensus_646#0
GCAAGAATCGGCACGATGGATGGTAGTGTAAGTGGTTTGAANATTGGTTTGTGACATAAT
GTCAAAGACCCGTCGGGATTGATGAGAAGAAAATATTGTCATTGTTGTGCCAAAGAACAA
ACAAAAAAAAAAACTAAATGGTAATTTTTTCCAAGTATTGTGTAAAAAATTTTTCTTTGT
CTAAAAAATGCAAAAAAAATGCTGAAAAGTACTAAAAAAAATTGTCTGCATGAATCGTAT
TACTTGACAAATGTCGAGAATACAAAGCACCTAACATTTTGAAAAGTATCTCTTTATGTC
CAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATCGATCTCACCCGAATAATACAATAA
CACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTATTTTAATTA
TGTATTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTNTGTTTGAGAAACAATNATTT
GAATTGGCCTTAAATTTTAGCATTTCGCGGTTTGATCGTATGATCTGAAAACGGCTTTTN
TCAAAGTATTATCCTCAGGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCTTAACA
ACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTCGTNCTGGC
TAAAACAACTTATCATTACACTTTACGCGTATAGTCCAGGTTACCGTGGAGGACTTGAGA
GTGAACAAACAGGCGTAACATTAGATTCCAGGGATGTACCCCCACCATTTTCCCAGTATT
CTTTCCGGAAAACCCAAATTGGNTATCCCGATTCTTGACACACGGTTAACCTGCTTACAA
CTTTTCGACANACTCTGTTACTCCTTGAGTAACNCCTCCTATTAACCCCAGAAAAAGCGC
TTACACTTNGGGAAACCACAAACCCGCTACCAATAAAGCAC

consensusID : consensus_646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [GATCTATTTATGTCCAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATAGATCTCACCCGAATAATACAATAACACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTTATTTTAATTATGTATTTTTTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTTTGTTTGAGAAAATTATTTGAATTGACCTTAAATTTTAGCATTTTTTGTTTTGATCGTATGATCTGAAAACGGCTTTTTCAAATATTATCCTCAGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCTTAAAAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTTGTTTTTTTGCTAAACAACTTATCATTACACTTTCGCGTATAGTCGAGTTACGTGGAGGACTTGGGAGTGAACAAACAGCGTAACTTAGATGCAGGATGTACCCAGATTTCCAGTATTTTCGGAACCAATTGTATCGATGTGACACGTTAACTGTTAAATTTTGAAAGTTGTATCTGAGTAACCTCTTTAGCCGAGAAACGCGTAACTCGGAAACAGACCGTACAGTAAGAGCTAACCCCAAAATATAAAATTTGGCAATTGTTTGTCCACAAATGCTTTCCCTCCTAACAAATAGTCAAAAATAATCTAATAATTTAGTTTTATTACGTTCTTCATAAT]

[+] EMBL BX621984             [GATCTATTTATGTCCAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATAGATCTCACCCGAATAATACAATAACACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTTATTTTAATTATGTATTTTTTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTTTGTTTGAGAAAATTATTTGAATTGACCTTAAATTTTAGCATTTTTTGTTTTGATCGTATGATCTGAAAACGGCTTTTTCAAATATTATCCTCAGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCTTAAAAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTTGTTTTTTTGCTAAACAACTTATCATTACACTTTCGCGTATAGTCGAGTTACGTGGAGGACTTGGGAGTGAACAAACAGCGTAACTTAGATGCAGGATGTACCCAGATTTCCAGTATTTTCGGAACCAATTGTATCGATGTGACACGTTAACTGTTAAATTTTGAAAGTTGTATCTGAGTAACCTCTTTAGCCGAGAAACGCGTAACTCGGAAACAGACCGTACAGTAAGAGCTAACCCCAAAATATAAAATTTGGCAATTGTTTGTCCACAAATGCTTTCCCTCCTAACAAATAGTCAAAAATAATCTAATAATTTAGTTTTATTACGTTCTTCATAAT]




>consensus_646#1
GATCTATTTATGTCCAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATAGATCTCACCC
GAATAATACAATAACACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAG
GTTTTATTTTAATTATGTATTTTTTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTTT
GTTTGAGAAAATTATTTGAATTGACCTTAAATTTTAGCATTTTTTGTTTTGATCGTATGA
TCTGAAAACGGCTTTTTCAAATATTATCCTCAGCACACAATGTCATCTTTGTATTGAAGT
GTCATTTCTTAAAAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAG
CTTTTTGTTTTTTTGCTAAACAACTTATCATTACACTTTCGCGTATAGTCGAGTTACGTG
GAGGACTTGGGAGTGAACAAACAGCGTAACTTAGATGCAGGATGTACCCAGATTTCCAGT
ATTTTCGGAACCAATTGTATCGATGTGACACGTTAACTGTTAAATTTTGAAAGTTGTATC
TGAGTAACCTCTTTAGCCGAGAAACGCGTAACTCGGAAACAGACCGTACAGTAAGAGCTA
ACCCCAAAATATAAAATTTGGCAATTGTTTGTCCACAAATGCTTTCCCTCCTAACAAATA
GTCAAAAATAATCTAATAATTTAGTTTTATTACGTTCTTCATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_646#0      GCAAGAATCGGCACGATGGATGGTAGTGTAAGTGGTTTGAANATTGGTTTGTGACATAAT 60
consensus_646#1      ------------------------------------------------------------
                                                                                 

consensus_646#0      GTCAAAGACCCGTCGGGATTGATGAGAAGAAAATATTGTCATTGTTGTGCCAAAGAACAA 120
consensus_646#1      ------------------------------------------------------------
                                                                                 

consensus_646#0      ACAAAAAAAAAAACTAAATGGTAATTTTTTCCAAGTATTGTGTAAAAAATTTTTCTTTGT 180
consensus_646#1      ------------------------------------------------------------
                                                                                 

consensus_646#0      CTAAAAAATGCAAAAAAAATGCTGAAAAGTACTAAAAAAAATTGTCTGCATGAATCGTAT 240
consensus_646#1      ------------------------------------------------------------
                                                                                 

consensus_646#0      TACTTGACAAATGTCGAGAATACAAAGCACCTAACATTTTGAAAAGTATCTCTTTATGTC 300
consensus_646#1      ----------------------------------------------GATCTATTTATGTC 14
                                                                    **** ********

consensus_646#0      CAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATCGATCTCACCCGAATAATACAATAA 360
consensus_646#1      CAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATAGATCTCACCCGAATAATACAATAA 74
                     *********************************** ************************

consensus_646#0      CACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTT-ATTTTAATT 419
consensus_646#1      CACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTTATTTTAATT 134
                     ************************************************** *********

consensus_646#0      ATGTATTTTT----AAACCAGTTTAGTTTCAATGAACTTCATGTNTGTTTGAGAAACAAT 475
consensus_646#1      ATGTATTTTTTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTTTGTTTGAGAAA--AT 192
                     **********    ****************************** ***********  **

consensus_646#0      NATTTGAATTGGCCTTAAATTTTAGCATTTCGCGGTTTGATCGTATGATCTGAAAACGGC 535
consensus_646#1      TATTTGAATTGACCTTAAATTTTAGCATTTTTTGTTTTGATCGTATGATCTGAAAACGGC 252
                      ********** ******************   * *************************

consensus_646#0      TTTTNTCAAAGTATTATCCTCAGGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCT 595
consensus_646#1      TTTTTC--AAATATTATCCTCAG-CACACAATGTCATCTTTGTATTGAAGTGTCATTTCT 309
                     ****    ** ************ ************************************

consensus_646#0      TAACAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTCGTN 655
consensus_646#1      TAAAAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTTGTT 369
                     *** **************************************************** ** 

consensus_646#0      CTGGC-TAAAACAACTTATCATTACACTTTACGCGTATAGTCCAGGTTACCGTGGAGGAC 714
consensus_646#1      TTTTTGCTAAACAACTTATCATTACACTTT-CGCGTATAGTC-GAGTTAC-GTGGAGGAC 426
                      *      ********************** ***********   ***** *********

consensus_646#0      TTGAGAGTGAACAAACAGGCGTAACATTAGATTCCAGGGATGTACCC------CCACCAT 768
consensus_646#1      TTGGGAGTGAACAAACAG-CGTAAC-TTAGATGC--AGGATGTACCCAGATTTCCAGTAT 482
                     *** ************** ****** ****** *   **********      ***  **

consensus_646#0      TTTCCCAGTATTCTTTCCGGAAAACCCAAATTGGNTATCCCGATTCTTGACACACGGTTA 828
consensus_646#1      TTTCGGAACCAATTGTATCGATGTGACACGTTAACTGT--TAAATTTTGAAAGTTG--TA 538
                     ****  *      * *   **     **  **   * *    * * **** *   *  **

consensus_646#0      ACCTGCTTACAACTTT--TCGACANACTCTGTTACTCCTTGAGTAACNCCTCCT-----A 881
consensus_646#1      TCTGAGTAACCTCTTTAGCCGAGAAACGC-GTAACTCGGAAACAGACCGTACAGTAAGAG 597
                      *    * **  ****   *** * ** * ** ****    *   **    *        

consensus_646#0      TTAACCCCAGAAAA-AGCGCTTACACTTNGGGAAACCACAAAC----CCGCTACCAATAA 936
consensus_646#1      CTAACCCCAAAATATAAAATTTGGCAATTGTTTGTCCACAAATGCTTTCCCTCCTAACAA 657
                      ******** ** * *    **     * *     *******      * ** * ** **

consensus_646#0      AGCAC------------------------------------------- 941
consensus_646#1      ATAGTCAAAAATAATCTAATAATTTAGTTTTATTACGTTCTTCATAAT 705
                     *