These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 941 fasta sequence [GCAAGAATCGGCACGATGGATGGTAGTGTAAGTGGTTTGAANATTGGTTTGTGACATAATGTCAAAGACCCGTCGGGATTGATGAGAAGAAAATATTGTCATTGTTGTGCCAAAGAACAAACAAAAAAAAAAACTAAATGGTAATTTTTTCCAAGTATTGTGTAAAAAATTTTTCTTTGTCTAAAAAATGCAAAAAAAATGCTGAAAAGTACTAAAAAAAATTGTCTGCATGAATCGTATTACTTGACAAATGTCGAGAATACAAAGCACCTAACATTTTGAAAAGTATCTCTTTATGTCCAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATCGATCTCACCCGAATAATACAATAACACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTATTTTAATTATGTATTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTNTGTTTGAGAAACAATNATTTGAATTGGCCTTAAATTTTAGCATTTCGCGGTTTGATCGTATGATCTGAAAACGGCTTTTNTCAAAGTATTATCCTCAGGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCTTAACAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTCGTNCTGGCTAAAACAACTTATCATTACACTTTACGCGTATAGTCCAGGTTACCGTGGAGGACTTGAGAGTGAACAAACAGGCGTAACATTAGATTCCAGGGATGTACCCCCACCATTTTCCCAGTATTCTTTCCGGAAAACCCAAATTGGNTATCCCGATTCTTGACACACGGTTAACCTGCTTACAACTTTTCGACANACTCTGTTACTCCTTGAGTAACNCCTCCTATTAACCCCAGAAAAAGCGCTTACACTTNGGGAAACCACAAACCCGCTACCAATAAAGCAC] [+] EMBL BX467832 [GCAAGAATCGGCACGATGGATGGTAGTGTAAGTGGTTTGAANATTGGTTTGTGACATAATGTCAAAGACCCGTCGGGATTGATGAGAAGAAAATATTGTCATTGTTGTGCCAAAGAACAAACAAAAAAAAAAACTAAATGGTAATTTTTTCCAAGTATTGTGTAAAAAATTTTTCTTTGTCTAAAAAATGCAAAAAAAATGCTGAAAAGTACTAAAAAAAATTGTCTGCATGAATCGTATTACTTGACAAATGTCGAGAATACAAAGCACCTAACATTTTGAAAAGTATCTCTTTATGTCCAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATCGATCTCACCCGAATAATACAATAACACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTATTTTAATTATGTATTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTNTGTTTGAGAAACAATNATTTGAATTGGCCTTAAATTTTAGCATTTCGCGGTTTGATCGTATGATCTGAAAACGGCTTTTNTCAAAGTATTATCCTCAGGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCTTAACAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTCGTNCTGGCTAAAACAACTTATCATTACACTTTACGCGTATAGTCCAGGTTACCGTGGAGGACTTGAGAGTGAACAAACAGGCGTAACATTAGATTCCAGGGATGTACCCCCACCATTTTCCCAGTATTCTTTCCGGAAAACCCAAATTGGNTATCCCGATTCTTGACACACGGTTAACCTGCTTACAACTTTTCGACANACTCTGTTACTCCTTGAGTAACNCCTCCTATTAACCCCAGAAAAAGCGCTTACACTTNGGGAAACCACAAACCCGCTACCAATAAAGCAC] consensusID : consensus_646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [GATCTATTTATGTCCAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATAGATCTCACCCGAATAATACAATAACACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTTATTTTAATTATGTATTTTTTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTTTGTTTGAGAAAATTATTTGAATTGACCTTAAATTTTAGCATTTTTTGTTTTGATCGTATGATCTGAAAACGGCTTTTTCAAATATTATCCTCAGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCTTAAAAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTTGTTTTTTTGCTAAACAACTTATCATTACACTTTCGCGTATAGTCGAGTTACGTGGAGGACTTGGGAGTGAACAAACAGCGTAACTTAGATGCAGGATGTACCCAGATTTCCAGTATTTTCGGAACCAATTGTATCGATGTGACACGTTAACTGTTAAATTTTGAAAGTTGTATCTGAGTAACCTCTTTAGCCGAGAAACGCGTAACTCGGAAACAGACCGTACAGTAAGAGCTAACCCCAAAATATAAAATTTGGCAATTGTTTGTCCACAAATGCTTTCCCTCCTAACAAATAGTCAAAAATAATCTAATAATTTAGTTTTATTACGTTCTTCATAAT] [+] EMBL BX621984 [GATCTATTTATGTCCAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATAGATCTCACCCGAATAATACAATAACACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTTATTTTAATTATGTATTTTTTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTTTGTTTGAGAAAATTATTTGAATTGACCTTAAATTTTAGCATTTTTTGTTTTGATCGTATGATCTGAAAACGGCTTTTTCAAATATTATCCTCAGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCTTAAAAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTTGTTTTTTTGCTAAACAACTTATCATTACACTTTCGCGTATAGTCGAGTTACGTGGAGGACTTGGGAGTGAACAAACAGCGTAACTTAGATGCAGGATGTACCCAGATTTCCAGTATTTTCGGAACCAATTGTATCGATGTGACACGTTAACTGTTAAATTTTGAAAGTTGTATCTGAGTAACCTCTTTAGCCGAGAAACGCGTAACTCGGAAACAGACCGTACAGTAAGAGCTAACCCCAAAATATAAAATTTGGCAATTGTTTGTCCACAAATGCTTTCCCTCCTAACAAATAGTCAAAAATAATCTAATAATTTAGTTTTATTACGTTCTTCATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_646#0 GCAAGAATCGGCACGATGGATGGTAGTGTAAGTGGTTTGAANATTGGTTTGTGACATAAT 60 consensus_646#1 ------------------------------------------------------------ consensus_646#0 GTCAAAGACCCGTCGGGATTGATGAGAAGAAAATATTGTCATTGTTGTGCCAAAGAACAA 120 consensus_646#1 ------------------------------------------------------------ consensus_646#0 ACAAAAAAAAAAACTAAATGGTAATTTTTTCCAAGTATTGTGTAAAAAATTTTTCTTTGT 180 consensus_646#1 ------------------------------------------------------------ consensus_646#0 CTAAAAAATGCAAAAAAAATGCTGAAAAGTACTAAAAAAAATTGTCTGCATGAATCGTAT 240 consensus_646#1 ------------------------------------------------------------ consensus_646#0 TACTTGACAAATGTCGAGAATACAAAGCACCTAACATTTTGAAAAGTATCTCTTTATGTC 300 consensus_646#1 ----------------------------------------------GATCTATTTATGTC 14 **** ******** consensus_646#0 CAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATCGATCTCACCCGAATAATACAATAA 360 consensus_646#1 CAGTGGTACGCCGTTTATCCGGGCTTTTCGGGAATAGATCTCACCCGAATAATACAATAA 74 *********************************** ************************ consensus_646#0 CACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTT-ATTTTAATT 419 consensus_646#1 CACGGATAGTGGGTCCAACTACGTTTTTTATCGCAAAAACTTTAAGGTTTTATTTTAATT 134 ************************************************** ********* consensus_646#0 ATGTATTTTT----AAACCAGTTTAGTTTCAATGAACTTCATGTNTGTTTGAGAAACAAT 475 consensus_646#1 ATGTATTTTTTTTTAAACCAGTTTAGTTTCAATGAACTTCATGTTTGTTTGAGAAA--AT 192 ********** ****************************** *********** ** consensus_646#0 NATTTGAATTGGCCTTAAATTTTAGCATTTCGCGGTTTGATCGTATGATCTGAAAACGGC 535 consensus_646#1 TATTTGAATTGACCTTAAATTTTAGCATTTTTTGTTTTGATCGTATGATCTGAAAACGGC 252 ********** ****************** * ************************* consensus_646#0 TTTTNTCAAAGTATTATCCTCAGGCACACAATGTCATCTTTGTATTGAAGTGTCATTTCT 595 consensus_646#1 TTTTTC--AAATATTATCCTCAG-CACACAATGTCATCTTTGTATTGAAGTGTCATTTCT 309 **** ** ************ ************************************ consensus_646#0 TAACAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTCGTN 655 consensus_646#1 TAAAAACACGGATATATGGAAAGCTGGATAAAAGGTGTCCTACTGAATGAGCTTTTTGTT 369 *** **************************************************** ** consensus_646#0 CTGGC-TAAAACAACTTATCATTACACTTTACGCGTATAGTCCAGGTTACCGTGGAGGAC 714 consensus_646#1 TTTTTGCTAAACAACTTATCATTACACTTT-CGCGTATAGTC-GAGTTAC-GTGGAGGAC 426 * ********************** *********** ***** ********* consensus_646#0 TTGAGAGTGAACAAACAGGCGTAACATTAGATTCCAGGGATGTACCC------CCACCAT 768 consensus_646#1 TTGGGAGTGAACAAACAG-CGTAAC-TTAGATGC--AGGATGTACCCAGATTTCCAGTAT 482 *** ************** ****** ****** * ********** *** ** consensus_646#0 TTTCCCAGTATTCTTTCCGGAAAACCCAAATTGGNTATCCCGATTCTTGACACACGGTTA 828 consensus_646#1 TTTCGGAACCAATTGTATCGATGTGACACGTTAACTGT--TAAATTTTGAAAGTTG--TA 538 **** * * * ** ** ** * * * * **** * * ** consensus_646#0 ACCTGCTTACAACTTT--TCGACANACTCTGTTACTCCTTGAGTAACNCCTCCT-----A 881 consensus_646#1 TCTGAGTAACCTCTTTAGCCGAGAAACGC-GTAACTCGGAAACAGACCGTACAGTAAGAG 597 * * ** **** *** * ** * ** **** * ** * consensus_646#0 TTAACCCCAGAAAA-AGCGCTTACACTTNGGGAAACCACAAAC----CCGCTACCAATAA 936 consensus_646#1 CTAACCCCAAAATATAAAATTTGGCAATTGTTTGTCCACAAATGCTTTCCCTCCTAACAA 657 ******** ** * * ** * * ******* * ** * ** ** consensus_646#0 AGCAC------------------------------------------- 941 consensus_646#1 ATAGTCAAAAATAATCTAATAATTTAGTTTTATTACGTTCTTCATAAT 705 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||