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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1194 fasta sequence
[CCGGGTGTGTGCGAGTAAGAGCGTTTTTTTGTAATTAATTTCCTCATGTATTTTGTAGCCTGATTGTAATCTGAGTGCCATCTGCGTTTTGCAAAACAAAACAAAAAAGCGAAACAAGTGTAATAAGCATAAAACAGACAGACCTGTGCTGTGTGCGCGTGTGAGTGTGTGTGTGAGTGTGTGTATGGAAAGGAGGAACCCGTTCTAATTGTAAAAAGGACGACTGTGTGTGTGTGAGAGAAGGGATTATGGTAACTCACCCATGTGGACTTGTTCCACATTCTTGTTTGCTGTATTTTCCACTTTAATAATTAAATGTGGCTTGCCCATGGCACACTGTGTGCTGAGCAGGGTGAAGAGAAACGTTCTCAGCTACGTGCGCCTGCCCCACGATTTCAATCTAGGCAGCACAGAACGGCAATGGTTGAATAAACAAGAGAGGGAAATGTGTAATGGAAAGTGATTTCATAGAAGAAAACCCGTTAAAGGATGCATGGGGAAAAGGTAGAACGTAAAGTTGTTTGTGTGAATACGTAAAAGAAAGAAGTGAAAAAGAAAGAATCGCTAATTGAAAAGCAAACAATAGGAAGGAAAAACAAAAGAGAAAAAGAGAGAAGAGAAAGGAACACAGAGAGAGAAAGAGAGAAAAACACAACTAGGCTGTGAAAATAGAAGTTAATCAATTAAGAATGTTTGTCATTTGTCTTTCTGCCTCCGATTGTTTTGGGACGAGAGGCGGGCTGGTGTCCTGACTCCCTCTCCCCACTTCTTCGTTTCGGTGGCCATTTAGGGTATGTGTGTGTGTGTGTATGTACGGGCGAATGAATGTGAAAAAAGCATTCTCAGTGTTCGGTGTGCTTTATAATTCGGTCGGAGGGACATTTAACGTAAAGCTGTGTCCAAAGTCCCCTCTAACCCTTCCCTAAAGAGGAGGTTAGGAAGTCAGGGAAGTGACATCATTCACTTTACCTGTGTAAGTTGATGATATTGTAGTTGTTCTTGTTGTTTGGGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCTCCCCCCTCCCCACCCATAATCGGTATCTCTGTACGTGAATGTATGTGACTGAGTGTCTGTGTAAGTGTATGTTTGTATGTATGTTGGTTGTTATTTCCGCAG]
[+] EMBL BM593655 [CCGGGTGTGTGCGAGTAAGAGCGTTTTTTTGTAATTAATTTCCTCATGTATTTTGTAGCCTGATTGTAATCTGAGTGCCATCTGCGTTTTGCAAAACAAAACAAAAAAGCGAAACAAGTGTAATAAGCATAAAACAGACAGACCTGTGCTGTGTGCGCGTGTGAGTGTGTGTGTGAGTGTGTGTATGGAAAGGAGGAACCCGTTCTAATTGTAAAAAGGACGACTGTGTGTGTGTGAGAGAAGGGATTATGGTAACTCACCCATGTGGACTTGTTCCACATTCTTGTTTGCTGTATTTTCCACTTTAATAATTAAATGTGGCTTGCCCATGGCACACTGTGTGCTGAGCAGGGTGAAGAGAAACGTTCTCAGCTACGTGCGCCTGCCCCACGATTTCAATCTAGGCAGCACAGAACGGCAATGGTTGAATAAACAAGAGAGGGAAATGTGTAATGGAAAGTGATTTCATAGAAGAAAACCCGTTAAAGGATGCATGGGGAAAAGGTAGAACGTAAAGTTGTTTGTGTGAATACGTAAAAGAAAGAAGTGAAAAAGAAAGAATCGCTAATTGAAAAGCAAACAATAGGAAGGAAAAACAAAAGAGAAAAAGAGAGAAGAGAAAGGAACACAGAGAGAGAAAGAGAG ]
[+] EMBL BM649954 [ ccgGCGAGTAAGAGCGTTTTTTTGTAATTAATTTCCTCATGTATTTTGTAGCCTGATTGTAATCTGAGTGCCATCTGCGTTTTGCAAAACAAAACAAAAAAGCGAAACAAGTGTAATAAGCATAAAACAGACAGACCTGTGCTGTGTGCGCGTGTGAGTGTGTGTGTGAGTGTGTGTATGGAAAGGAGGAACCCGTTCTAATTGTAAAAAGGACGACTGTGTGTGTGTGAGAGAAGGGATTATGGTAACTCACCCATGTGGACTTGTTCCACATTCTTGTTTGCTGTATTTTCCACTTTAATAATTAAATGTGGCTTGCCCATGGCACACTGTGTGCTGAGCAGGGTGAAGAGAAACGTTCTCAGCTACGTGCGCCTGCCCCACGATTTCAATCTAGGCAGCACAGAACGGCAATGGTTGAATAAACAAGAGAGGGAAATGTGTAATGGAAAGTGATTTCATAGAAGAAAACCCGTTAAAGGATGCATGGGGAAAAGGTAGAACG ]
[+] EMBL BX622090 [ AACCCGTTAAAGGATGCATGGGGAAAAGGTAGAACGTAAAGTTGTTTGTGTGAATACGTAAAAGAAAGAAGTGAAAAAGAAAGAATCGCTAATTGAAAAGCAAACAATAGGAAGGAAAAACAAAAGAGAAAAAGAGAGAAGAGAAAGGAACACAGAGAGAGAAAGAGAGAAAAACACAACTAGGCTGTGAAAATAGAAGTTAATCAATTAAGAATGTTTGTCATTTGTCTTTCTGCCTCCGATTGTTTTGGGACGAGAGGCGGGCTGGTGTCCTGACTCCCTCTCCCCACTTCTTCGTTTCGGTGGCCATTTAGGGTATGTGTGTGTGTGTGTATGTACGGGCGAATGAATGTGAAAAAAGCATTCTCAGTGTTCGGTGTGCTTTATAATTCGGTCGGAGGGACATTTAACGTAAAGCTGTGTCCAAAGTCCCCTCTAACCCTTCCCTAAAGAGGAGGTTAGGAAGTCAGGGAAGTGACATCATTCACTTTACCTGTGTAAGTTGATGATATTGTAGTTGTTCTTGTTGTTTGGGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCTCCCCCCTCCCCACCCATAATCGGTATCTCTGTACGTGAATGTAT ]
[+] EMBL BX624932 [ GCTGTGAAAATAGAAGTTAATCAATTAAGAATGTTTGTCATTTGTCTTTCTGCCTCCGATTGTTTTGGGACGAGAGGCGGGCTGGTGTCCTGACTCCCTCTCCCCACTTCTTCGTTTCGGTGGCCATTTAGGGTATGTGTGTGTGTGTGTATGTACGGGCGAATGAATGTGAAAAAAGCATTCTCAGTGTTCGGTGTGCTTTATAATTCGGTCGGAGGGACATTTAACGTAAAGCTGTGTCCAAAGTCCCCTCTAACCCTTCCCTAAAGAGGAGGTTAGGAAGTCAGGGAAGTGACATCATTCACTTTACCTGTGTAAGTTGATGATATTGTAGTTGTTCTTGTTGTTTGGGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCTCCCCCCTCCCCACCCATAATCGGTATCTCTGTACGTGAATGTATGTGACTGAGTGTCTGTGTAAGTGTATGTTTGTATGTATGTTGGTTGTTATTTCCGCAG]
consensusID : consensus_6461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence
[GGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCCCCCCCCTCCCCACCCATAATCGTTAGAGCGGGGGGGGATAGGGGATACGTACCCCCCCCANA]
[+] EMBL BX619844 [GGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCCCCCCCCTCCCCACCCATAATCGTTAGAGCGGGGGGGGATAGGGGATACGTACCCCCCCCANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6461#0 CCGGGTGTGTGCGAGTAAGAGCGTTTTTTTGTAATTAATTTCCTCATGTATTTTGTAGCC 60
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 TGATTGTAATCTGAGTGCCATCTGCGTTTTGCAAAACAAAACAAAAAAGCGAAACAAGTG 120
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 TAATAAGCATAAAACAGACAGACCTGTGCTGTGTGCGCGTGTGAGTGTGTGTGTGAGTGT 180
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 GTGTATGGAAAGGAGGAACCCGTTCTAATTGTAAAAAGGACGACTGTGTGTGTGTGAGAG 240
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 AAGGGATTATGGTAACTCACCCATGTGGACTTGTTCCACATTCTTGTTTGCTGTATTTTC 300
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 CACTTTAATAATTAAATGTGGCTTGCCCATGGCACACTGTGTGCTGAGCAGGGTGAAGAG 360
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 AAACGTTCTCAGCTACGTGCGCCTGCCCCACGATTTCAATCTAGGCAGCACAGAACGGCA 420
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 ATGGTTGAATAAACAAGAGAGGGAAATGTGTAATGGAAAGTGATTTCATAGAAGAAAACC 480
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 CGTTAAAGGATGCATGGGGAAAAGGTAGAACGTAAAGTTGTTTGTGTGAATACGTAAAAG 540
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 AAAGAAGTGAAAAAGAAAGAATCGCTAATTGAAAAGCAAACAATAGGAAGGAAAAACAAA 600
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 AGAGAAAAAGAGAGAAGAGAAAGGAACACAGAGAGAGAAAGAGAGAAAAACACAACTAGG 660
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 CTGTGAAAATAGAAGTTAATCAATTAAGAATGTTTGTCATTTGTCTTTCTGCCTCCGATT 720
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 GTTTTGGGACGAGAGGCGGGCTGGTGTCCTGACTCCCTCTCCCCACTTCTTCGTTTCGGT 780
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 GGCCATTTAGGGTATGTGTGTGTGTGTGTATGTACGGGCGAATGAATGTGAAAAAAGCAT 840
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 TCTCAGTGTTCGGTGTGCTTTATAATTCGGTCGGAGGGACATTTAACGTAAAGCTGTGTC 900
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 CAAAGTCCCCTCTAACCCTTCCCTAAAGAGGAGGTTAGGAAGTCAGGGAAGTGACATCAT 960
consensus_6461#1 ------------------------------------------------------------
consensus_6461#0 TCACTTTACCTGTGTAAGTTGATGATATTGTAGTTGTTCTTGTTGTTTGGGGTGAGAGTA 1020
consensus_6461#1 -------------------------------------------------GGGTGAGAGTA 11
***********
consensus_6461#0 ATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACT 1080
consensus_6461#1 ATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACT 71
************************************************************
consensus_6461#0 CTGTACCCCCCTCCCCCCTCCCCACCCATAATCGGTATCTCTGTACGTGAATGTATGTGA 1140
consensus_6461#1 CTGTACCCCCCCCCCCCCTCCCCACCCATAATCGTTAGAGCGGGG-GGGGATAGGGGATA 130
*********** ********************** ** * * * * ** * *
consensus_6461#0 CTGAGTGTCTGTGTAAGTGTATGTTTGTATGTATGTTGGTTGTTATTTCCGCAG 1194
consensus_6461#1 CGTACCCCCCCCANA--------------------------------------- 145
* * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||