These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 846 fasta sequence [CCGCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTGGATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTTAAAATAATATATAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCGAGCGAT------AGAGAGAGAG--------CGAGAAAGAGGGGGAAATAGAAGCGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAA--ACACACACACGAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACG-AAACCGGACCAACCG-CCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGAGGCCAGCTGGCCGTCGGTGCTGTTTTACATCCATCTCAACATTCTCGGCGTGTACGGAATTTTCGTTTTATTTTCTCACACCTCACTGATAACGTGTGTCTTCACATTCTTGCTCACATTGTTCGGCATCTTGGGCGTTACGGCCGGGGCCCACCGTCTA] [+] EMBL BM602757 [CCGCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTGGATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTTAAAATAATATATAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCAAGCGAC AGAGAGAGAG CGAGAAAGAGGGGGACATAGAAGCGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAA ACACACACACGAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACG AAACCGGACCAACCG CCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGAGGCCAGC ] [+] EMBL BM657423 [ ccGTGTGAATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTGAAAATAATATACAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCAGTCGATCGAGCGATAGAGAGAGAGAGAGAG CGAGAAAGAGGGGGAAATAGAAGCGAGCGTGGTGCCTCCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTAGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACACACACGAGCACCACCGGCAATCGCATCCACAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACGAAAACCGGACCAACCGCCCCCAGCCCA ] [+] EMBL BX621567 [ TCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCGAGCGAT AGAGAGAGAGAGAGAGACCGAGAAAGAGGGGAAAATAGAAGCGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAA ACACACACACGAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACG AAACCGGACCAACCG CCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGAGGCCAGCTGGCCGTCGGTGCTGTTTTACATCCATCTCAACATTCTCGGCGTGTACGGAATTTTCGTTTTATTTTCTCACACCTCACTGATAACGTGTGTCTTCACATTCTTGCTCACATTGTTCGGCATCTTGGGCGTTACGGCCGGGGCCCACCGTCTA] [+] EMBL BX626712 [ TCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCGAGCGAT AGAGAGAGAGAGAGAGACCGAGAAAGAGGGGAAAATAGAAGCGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAA ACACACACACGAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACG AAACCGGACCAACCG CCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGAGGGCAGCTGGNCGTCGGTGCTGTTTTACATCCATCTCAACATTCTCGGCGTGTACGGAATTTT ] consensusID : consensus_6464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGCGGAGCTCTCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTGGATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTGAAAATAATATATAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGTTCGAGCGATAGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGCGAAAAAGAGGGGGACATAGAAGAGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACACACACGAGCACCACCGGCAATCGCATCCACAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGGCGACGAAACC] [+] EMBL BM623449 [CCGCGGAGCTCTCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTGGATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTGAAAATAATATATAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGTTCGAGCGATAGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGCGAAAAAGAGGGGGACATAGAAGAGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACACACACGAGCACCACCGGCAATCGCATCCACAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGGCGACGAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6464#0 ---------CCGCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTG 51 consensus_6464#1 CCGCGGAGCTCTCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTG 60 * ************************************************ consensus_6464#0 GATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCT 111 consensus_6464#1 GATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCT 120 ************************************************************ consensus_6464#0 GCCGTCCGACGGGACTTTCCACGACGCATCCGCATTTAAAATAATATATAGGCGCATGTG 171 consensus_6464#1 GCCGTCCGACGGGACTTTCCACGACGCATCCGCATTGAAAATAATATATAGGCGCATGTG 180 ************************************ *********************** consensus_6464#0 CGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACA 231 consensus_6464#1 CGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACA 240 ************************************************************ consensus_6464#0 GACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTA 291 consensus_6464#1 GACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTA 300 ************************************************************ consensus_6464#0 GCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCGAGCGATAGAGAGA 351 consensus_6464#1 GCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGTTCGAGCGATAGAGAGA 360 ******************************************* **************** consensus_6464#0 GAG----------------------CGAGAAAGAGGGGGAAATAGAAGCGAGCGTGGTGC 389 consensus_6464#1 GAGAAAGAGAGAGAGAGGGAGAGAGCGAAAAAGAGGGGGACATAGAAGAGAGCGTGGTGC 420 *** *** *********** ******* *********** consensus_6464#0 CACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACA 449 consensus_6464#1 CACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACA 480 ************************************************************ consensus_6464#0 GCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACAC 509 consensus_6464#1 GCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACAC 540 ************************************************************ consensus_6464#0 AC--GAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCG 567 consensus_6464#1 ACACGAGCACCACCGGCAATCGCATCCACAATGGCCGATCATAATGAAAACTTTGCCCCG 600 ** *************** ******** ******************************* consensus_6464#0 AGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGG-CGACGAAACCGGACCA 626 consensus_6464#1 AGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGGCGACGAAACC------ 654 ******************************************* ********** consensus_6464#0 ACCGCCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGA 686 consensus_6464#1 ------------------------------------------------------------ consensus_6464#0 GGCCAGCTGGCCGTCGGTGCTGTTTTACATCCATCTCAACATTCTCGGCGTGTACGGAAT 746 consensus_6464#1 ------------------------------------------------------------ consensus_6464#0 TTTCGTTTTATTTTCTCACACCTCACTGATAACGTGTGTCTTCACATTCTTGCTCACATT 806 consensus_6464#1 ------------------------------------------------------------ consensus_6464#0 GTTCGGCATCTTGGGCGTTACGGCCGGGGCCCACCGTCTA 846 consensus_6464#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||