cluster # 6465

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Anopheles gambiae
cluster # 6465 cluster # 6465 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6465#0 length = 898 sequences # 4

consensus_6465#1 length = 303 sequences # 1

consensusID : consensus_6465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 898
fasta sequence

                              [AACGAACGAGCGCAGCATCAATCAGCAATAGCAGAAGCAGAATCGGTCGAGAATGGCACAGCGAAAAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTCGTGTGGAAGAAATCCCCATGCCACGGCCGCGCGATCATGAGGTCCTGCTCGAGATGGACTGTGTGGGCATCTGCGGCTCGGACGTGCACTACGTGTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGATGGTGCTCGGTCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAAGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTACTGTGTGACCACGGGGCATGGTAATTTGTGCAACTACTACACTCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGGGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCGAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGCCAAGACGCTCGGGGCTGATGCAACGCTGGCGGTTAGCGGACACGATACGCAGGATGAGATCGTGAAGCGCATTCATGCGCTGCTCGGTACTGCGCCAGACATTAGCATCGAGTGTACGGGGGCGGAAGCGTGCGTACAGCTGGGAATTGAAGCTACCGTACCAGGCGGTGTGGTGACGCTGGTTGGCATCGGTGCCATACAGCAGCGTGTCCCG]

[+] EMBL BX624790             [AACGAACGAGCGCAGCATCAATCAGCAATAGCAGAAGCAGAATCGGTCGAGAATGGCACAGCGAAAAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTCGTGTGGAAGAAATCCCCATGCCACGGCCGCGCGATCATGAGGTCCTGCTCGAGATGGACTGTGTGGGCATCTGCGGCTCGGACGTGCACTACGTGTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGATGGTGCTCGGTCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAAGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTACTGTGTGACCACGGGGCATGGTAATTTGTGCAACTACTACACTCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGGGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCGAANGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGNCAAGACGCTCGGGGCTGATGCAACGCTGGCGGNTAGCGGACACGATACGCAGGATGAGATCGTGAAGCGCATTCATGCGCTGCT                                                                                                                                  ]
[+] EMBL BX623500             [                                         ATCGGTCGAGAATGGCACAGCGAAAAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTCGTGTGGAAGAAATCCCCATGCCACGGCCGCGCGATCATGAGGTCCTGCTCGAGATGGACTGTGTGGGCATCTGCGGCTCGGACGTGCACTACGTGTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGATGGTGCTCGGTCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAAGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTACTGTGTGACCACGGGGCATGGTAATTTGTGCAACTACTACACTCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGGGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGTACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCGAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGCCAAGACGCTCNGGGCTGATGCAACGCTGGCGGTTAGCGGACACGATACGCANGATGAGATCGTGAAGCGCATTCATGCGCTGCTTGGTACTGCGCCAGACAT                                                                                                                ]
[+] EMBL BX614951             [                                                                                                                                                                                                     ACTACGTGTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGCTGGTACTTGGCCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAGGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTATTGTGCGACTACGGGGCATGGTAATTTGTGCAACTACTACTCGCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGCGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCCAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGCCAAGACGCTAGGGGCCGATGCAACGCTGGCGGTTAGCGGACACGATACGCAGGATGAGATCGTGAAGCGCATTCATGCACTGCTCGGTACTGCGCCAGACATTAGCATCGAGTGTACGGGGGCGGAAGCGTGCGTACAGCTGGGAATTGAAGCTACCGTACCAGGCGGTGTGGTGACGCTGGTTGGCATCGGTGCCATACAGCAGCGTGTCCCG]
[+] EMBL BX610019             [                                                                                                                                                                                                            GTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGCTGGTACTTGGCCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAGGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTATTGTGCGACTACGGGGCATGGTAATTTGTGCAACTACTACTCGCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGCGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGGCAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCCAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGCCAAGACGCTAGGGGCCGATGCAACGCTGGCGGTTAGCGGACACGATACGCAGGATGAGATCGTGAAGCGCATTCATGCACTGCTCGGTACTGCGCCAGACATTA                                                                                                              ]




>consensus_6465#0
AACGAACGAGCGCAGCATCAATCAGCAATAGCAGAAGCAGAATCGGTCGAGAATGGCACA
GCGAAAAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTCGTGTGGAAGA
AATCCCCATGCCACGGCCGCGCGATCATGAGGTCCTGCTCGAGATGGACTGTGTGGGCAT
CTGCGGCTCGGACGTGCACTACGTGTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGA
CAAGATGGTGCTCGGTCACGAATCGTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAAC
CAGCCTGCAGGTGGGTGATCGTGTCGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCG
GCACTGTAAGGCCGGCCGGTACAATATCTGCCCGCAGGGTGTTTACTGTGTGACCACGGG
GCATGGTAATTTGTGCAACTACTACACTCACGCGGCCGACTGCTGCTTCAAGCTGCCGGC
GAATGTGACGATGGAGGAGGGCGCCCTGCTGGAACCGCTTGCCGTGGGGGTGCACTGTTG
CCGCCGGGGTGGTGTCGGGATTGGCAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGG
GCTCGTTACGCTGCTGGTAGCGAAAGCGATGGGTGCGGCGAAGGTGTGCGTCATCGATCT
GGTGGAGCGGAAGCTCGAGCTGGCCAAGACGCTCGGGGCTGATGCAACGCTGGCGGTTAG
CGGACACGATACGCAGGATGAGATCGTGAAGCGCATTCATGCGCTGCTCGGTACTGCGCC
AGACATTAGCATCGAGTGTACGGGGGCGGAAGCGTGCGTACAGCTGGGAATTGAAGCTAC
CGTACCAGGCGGTGTGGTGACGCTGGTTGGCATCGGTGCCATACAGCAGCGTGTCCCG

consensusID : consensus_6465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [GGGCAAGATTGGCCCGAGGTTNCNATCGAACGAACGAGCGCAGCATCAAATCAGCAATAGCAGAAGCAGAATCGGTCGAGAATGGCACAGCGAANAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTTCGTGTGGCAAGGAAAATTCCCATGCCACGGGCCGCGCGATCATGAAGGGTCCTNGCTTCGAAGGATTGGGGACCTTGGTTGGTTGGGGGCATTTCTTGGCCGGGGCTTCGGGGAACCGGTTGGCAACTTAAACGGTGGTTCGNGCAACGGGCAGGGANATTCCG]

[+] EMBL AL696877             [GGGCAAGATTGGCCCGAGGTTNCNATCGAACGAACGAGCGCAGCATCAAATCAGCAATAGCAGAAGCAGAATCGGTCGAGAATGGCACAGCGAANAGTTAAAAATCTTGCCGGCGTGGTACACGGCGTCGAAGACTTTTCGTGTGGCAAGGAAAATTCCCATGCCACGGGCCGCGCGATCATGAAGGGTCCTNGCTTCGAAGGATTGGGGACCTTGGTTGGTTGGGGGCATTTCTTGGCCGGGGCTTCGGGGAACCGGTTGGCAACTTAAACGGTGGTTCGNGCAACGGGCAGGGANATTCCG]




>consensus_6465#1
GGGCAAGATTGGCCCGAGGTTNCNATCGAACGAACGAGCGCAGCATCAAATCAGCAATAG
CAGAAGCAGAATCGGTCGAGAATGGCACAGCGAANAGTTAAAAATCTTGCCGGCGTGGTA
CACGGCGTCGAAGACTTTTCGTGTGGCAAGGAAAATTCCCATGCCACGGGCCGCGCGATC
ATGAAGGGTCCTNGCTTCGAAGGATTGGGGACCTTGGTTGGTTGGGGGCATTTCTTGGCC
GGGGCTTCGGGGAACCGGTTGGCAACTTAAACGGTGGTTCGNGCAACGGGCAGGGANATT
CCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6465#0      ----------------------------AACGAACGAGCGCAGCATCAA-TCAGCAATAG 31
consensus_6465#1      GGGCAAGATTGGCCCGAGGTTNCNATCGAACGAACGAGCGCAGCATCAAATCAGCAATAG 60
                                                  ********************* **********

consensus_6465#0      CAGAAGCAGAATCGGTCGAGAATGGCACAGCGAAAAGTTAAAAATCTTGCCGGCGTGGTA 91
consensus_6465#1      CAGAAGCAGAATCGGTCGAGAATGGCACAGCGAANAGTTAAAAATCTTGCCGGCGTGGTA 120
                      ********************************** *************************

consensus_6465#0      CACGGCGTCGAAGACTTT-CGTGTGGAAG---AAATCCCCATGCCACGG-CCGCGCGATC 146
consensus_6465#1      CACGGCGTCGAAGACTTTTCGTGTGGCAAGGAAAATTCCCATGCCACGGGCCGCGCGATC 180
                      ****************** ******* *    **** ************ **********

consensus_6465#0      ATGA--GGTCCTGCTCGAGATGGACTGTGTGGGCATCTGCGGCTCGGACGTGCACTACGT 204
consensus_6465#1      ATGAAGGGTCCTNGCTTCGAAGGATTGGG--GACCTTGGTTGGTTGG--GGGCATTTCTT 236
                      ****  ******      ** *** ** *  * * *  *  * * **  * *** * * *

consensus_6465#0      GTCGCACGGAGGATTCGGCGACTACAAGCTAAAGGACAAGATGGTGCTCGGTCACGAATC 264
consensus_6465#1      G----GCCGGGGCTTCGGGGA--ACCGGTTGGCAACTTAAACGGTGGT---TCGNGCAAC 287
                      *     * * ** ***** **  **  * *        * * **** *   **  * * *

consensus_6465#0      GTCCGGTGTGGTGGTGGCCGTTGGAGCAGACGTAACCAGCCTGCAGGTGGGTGATCGTGT 324
consensus_6465#1      GGGCAGGGANATTCCG-------------------------------------------- 303
                      *  * * *   *   *                                            

consensus_6465#0      CGCCATTGAACCCGCGATTGGCTGTCGCACTTGCCGGCACTGTAAGGCCGGCCGGTACAA 384
consensus_6465#1      ------------------------------------------------------------
                                                                                  

consensus_6465#0      TATCTGCCCGCAGGGTGTTTACTGTGTGACCACGGGGCATGGTAATTTGTGCAACTACTA 444
consensus_6465#1      ------------------------------------------------------------
                                                                                  

consensus_6465#0      CACTCACGCGGCCGACTGCTGCTTCAAGCTGCCGGCGAATGTGACGATGGAGGAGGGCGC 504
consensus_6465#1      ------------------------------------------------------------
                                                                                  

consensus_6465#0      CCTGCTGGAACCGCTTGCCGTGGGGGTGCACTGTTGCCGCCGGGGTGGTGTCGGGATTGG 564
consensus_6465#1      ------------------------------------------------------------
                                                                                  

consensus_6465#0      CAGCACGGTGCTGGTGCTCGGTGCCGGACCGATCGGGCTCGTTACGCTGCTGGTAGCGAA 624
consensus_6465#1      ------------------------------------------------------------
                                                                                  

consensus_6465#0      AGCGATGGGTGCGGCGAAGGTGTGCGTCATCGATCTGGTGGAGCGGAAGCTCGAGCTGGC 684
consensus_6465#1      ------------------------------------------------------------
                                                                                  

consensus_6465#0      CAAGACGCTCGGGGCTGATGCAACGCTGGCGGTTAGCGGACACGATACGCAGGATGAGAT 744
consensus_6465#1      ------------------------------------------------------------
                                                                                  

consensus_6465#0      CGTGAAGCGCATTCATGCGCTGCTCGGTACTGCGCCAGACATTAGCATCGAGTGTACGGG 804
consensus_6465#1      ------------------------------------------------------------
                                                                                  

consensus_6465#0      GGCGGAAGCGTGCGTACAGCTGGGAATTGAAGCTACCGTACCAGGCGGTGTGGTGACGCT 864
consensus_6465#1      ------------------------------------------------------------
                                                                                  

consensus_6465#0      GGTTGGCATCGGTGCCATACAGCAGCGTGTCCCG 898
consensus_6465#1      ----------------------------------