These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence [GAAGCAGTATCAACTGAATCGGACAGGTACTCCTGCAGAGTACAGAGTAAAAAAGCTTTGAGTCGCCCCATTGCTTCATGCTACGGGAGGATTGTTAATACGATGCATAGAAGCTAGAGGGCCGCGAGGAAAACCTCTTTCAACCGAGTGCAACCTGAGGAATAGCTATTACCACGGCAAGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATTTGCCGGAAAGAAGGGAATGAGAAACGAGCCAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAAATATTAATACAAACGGAACAAATGACGAAAAGTGGAATAAAACACTGACACAACCAGACACACACATATACACACGTACACACATAACAAAACACAAACAAATGGAATAGGTACCAACAAATCAACATTATAGGATGCAGCACTTGTTTCGCTGAGTATCAGAAACGATAGGATTAGTTAGGAGCATGAAATAAAAGGATATCGTTCGAGTCCTGATTAACAAATTACGCTAAAAGTGTAACGTTGTTTATGCAAGAGTTGCAAACAAGTGAAGTAAGAGATAGAGCGAGAGAGAGTTAGGGAAGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGTAATGAAATGGTTCATCTGTGTCCGTGGAAGGATTCAAATTGAGTTTTTGAAGCATATATTATTAGCAATCCAAATGTCATACATGCGTATTCTTCTCGTCAAACACCAACATTTGTGAGCTTTTTGAAAAGAACTATTGCATTTTGTTACGTTGAACCTGCACTATGGTTGAACTATGTTAGGTTGAACCAATAAAAAAGAATTAAAATTTTTGATTAATGATTTTCTTTTGATTTTGATTAATGTAGTTG] [+] EMBL BM615465 [GAAGCAGTATCAACTGAATCGGACAGGTACTCCTGCAGAGTACAGAGTAAAAAAGCTTTGAGTCGCCCCATTGCTTCATGCTACGGGAGGATTGTTAATACGATGCATAGAAGCTAGAGGGCCGCGAGGAAAACCTCTTTCAACCGAGTGCAACCTGAGGAATAGCTATTACCACGGCAAGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATTTGCCGGAAAGAAGGGAATGAGAAACGAGCCAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAAATATTAATACAAACGGAACAAATGACGAAAAGTGGAATAAAACACTGACACAACCAGACACACACATATACACACGTACACACATAACAAAACACAAACAAATGGAATAGGTACCAACAAATCAACATTATAGGATGCAGCACTTGTTTCGCTGAGTATCAGAAACGATAGGATTAGTTAGG ] [+] EMBL BM649722 [ ccgAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAAATATTAATACAAACGGAACAAATGACGAAAAGTGGAATAAAACACTGACACAACCAGACACACACATACACACACGTACACACATAACAAAACACAAACAAATGGAATAGGTACCAACAAATCAACATTATAGGATGCAGCACTTGTTTCGCTGAGTATCAGAAACGATAGGATTAGTTAGGAGCATGAAATAAAAGGATATCGTTCGAGTCCTGATTAACAAATTACGCTAAAAGTGTAACGTTGTTTATGCAAGAGTTGCAAACAAGTGAAGTAAGAGATAGAGCGAGAGAGAGTTAGGGAAGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGTAATGAAATGGTTCATCTGTGTCCGTGGAA ] [+] EMBL BX610331 [ AGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGTAATGAAATGGTTCATCTGTGTCCGTGGAAGGATTCAAATTGAGTTTTTGAAGCATATATTATTAGCAATCCAAATGTCATACATGCGTATTCTTCTCGTCAAACACCAACATTTGTGAGCTTTTTGAAAAGAACTATTGCATTTTGTTACGTTGAACCTGCACTATGGTTGAACTATGTTAGGTTGAACCAATAAAAAAGAATTAAAATTTTTGATTAATGATTTTCTTTTGATTTTGATTAATGTAGTTG] consensusID : consensus_6467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1089 fasta sequence [AGAATCCCCTGAGGTTAAACTCTTTGAACGAGTGCACCTGAGGAATAGCTATTACCACGGGCAAGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATTTTGCCGGAAAGAAGGGAATGAGAAACTGATGCCAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAACTATTAATACAAACGNGAACAAATGACGANANCCACGTGGCATAAAACACTTGACACAACCAGACACACACATACACACACGTACACACNTAACACAAANCCACCACAAACCAAAACTTGGGGCATTAAGCGGTACCCCAAACCANAATCCACACCCTCTACTAGGACNTGCCAGCCACCNACTGGTCCACCGCCTTGGANAGTACTCCACNCACNCAACCGGAATCAAGAGACTTCANGCTCNCAAGCGCANGCCATTGCAANANTACNCACANGTGCACTAATTCCGCATACGCCNGCAGGTCNCCCCTTGGAAGTTCACAAGCGCACACGCACTCTAGCGGGCCGTNAANACACGGGTTGCTCACACCCGGCTTGGGNTACNNTAACTTGGCCACAACGACGCNCTGGGCGCACNACCACAACNGTTGGCAANAGNGCGTTACACACGCCACGGACTTACACTGCACGACAGGGAAGCAACGGAAGCAAGTNTAACGTCGGTGGCAAAACACAGCAAAGNGGGGCCCCGTGCTTTGCCACACACAAACTATNGGCNTATACAAGCAAAGTTNGGAAGATTAANNAACAANCCGNGCAAATGCCCCGGGCCCACACTTTTCCTGNACAACACACGGCTGGCCTCTGGCGCGCAACCAANTTACCACAACTAACNCNCGCCACCCCACACNAGGGNGGCGGCAACACANGGTCTGCGACAGGCAACTATGGGACCACTAACCCAAACAGCACACACATTACCCCGAAAGNAAAAAGGCNACGTTTATAAACCTNGATCACATTTAGGNACCCCGGTATGCATATNGCTTNGGGGTCACACACCGGGCCATCATNCTTACATGGCCTCNNTCGGGGGTTCACAACGNCNANTCGA] [+] EMBL AL692512 [AGAATCCCCTGAGGTTAAACTCTTTGAACGAGTGCACCTGAGGAATAGCTATTACCACGGGCAAGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATTTTGCCGGAAAGAAGGGAATGAGAAACTGATGCCAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAACTATTAATACAAACGNGAACAAATGACGANANCCACGTGGCATAAAACACTTGACACAACCAGACACACACATACACACACGTACACACNTAACACAAANCCACCACAAACCAAAACTTGGGGCATTAAGCGGTACCCCAAACCANAATCCACACCCTCTACTAGGACNTGCCAGCCACCNACTGGTCCACCGCCTTGGANAGTACTCCACNCACNCAACCGGAATCAAGAGACTTCANGCTCNCAAGCGCANGCCATTGCAANANTACNCACANGTGCACTAATTCCGCATACGCCNGCAGGTCNCCCCTTGGAAGTTCACAAGCGCACACGCACTCTAGCGGGCCGTNAANACACGGGTTGCTCACACCCGGCTTGGGNTACNNTAACTTGGCCACAACGACGCNCTGGGCGCACNACCACAACNGTTGGCAANAGNGCGTTACACACGCCACGGACTTACACTGCACGACAGGGAAGCAACGGAAGCAAGTNTAACGTCGGTGGCAAAACACAGCAAAGNGGGGCCCCGTGCTTTGCCACACACAAACTATNGGCNTATACAAGCAAAGTTNGGAAGATTAANNAACAANCCGNGCAAATGCCCCGGGCCCACACTTTTCCTGNACAACACACGGCTGGCCTCTGGCGCGCAACCAANTTACCACAACTAACNCNCGCCACCCCACACNAGGGNGGCGGCAACACANGGTCTGCGACAGGCAACTATGGGACCACTAACCCAAACAGCACACACATTACCCCGAAAGNAAAAAGGCNACGTTTATAAACCTNGATCACATTTAGGNACCCCGGTATGCATATNGCTTNGGGGTCACACACCGGGCCATCATNCTTACATGGCCTCNNTCGGGGGTTCACAACGNCNANTCGA] consensusID : consensus_6467#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [AGAATCCCCCCGAGNTTAAAGAGAGTAGGGAAGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGCTAACTGAAACTGGTTCATCTGTGTCCGNTGGCAAGGATTCAAATTGACGCTTCTNCTCGAACGCACTATANTTACTCTAGCAAATCCCAAATGGTCATACATGCGCTACTTCCTTCCTCGNTCAACACACCAAACACTTCNGCTGAGACTTACCGNACACACANGAACCTAATTGCCACTCTCACCGTATACGCTTGAAACCCCCTGCCCACCCTAACTGGCGCCTCTCGAACCCTAACTGCCTTCTCACGGCAGCTNTTGCANAACCCCCAAACTANCCCACAAAGGCACNACNTNTCAANCCACACTCTCCACTCTGGCANCNTCTCCACACCCGGCACCCTNTACCTCACCCATNC] [+] EMBL AL692125 [AGAATCCCCCCGAGNTTAAAGAGAGTAGGGAAGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGCTAACTGAAACTGGTTCATCTGTGTCCGNTGGCAAGGATTCAAATTGACGCTTCTNCTCGAACGCACTATANTTACTCTAGCAAATCCCAAATGGTCATACATGCGCTACTTCCTTCCTCGNTCAACACACCAAACACTTCNGCTGAGACTTACCGNACACACANGAACCTAATTGCCACTCTCACCGTATACGCTTGAAACCCCCTGCCCACCCTAACTGGCGCCTCTCGAACCCTAACTGCCTTCTCACGGCAGCTNTTGCANAACCCCCAAACTANCCCACAAAGGCACNACNTNTCAANCCACACTCTCCACTCTGGCANCNTCTCCACACCCGGCACCCTNTACCTCACCCATNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6467#0 GAAGCAGTATCAACTGAATCGGACAGGTACTCCTGCAGAGTACAGAGTAAAAAAGCTTTG 60 consensus_6467#2 ------------------------------------------------------------ consensus_6467#1 ------------------------------------------------------------ consensus_6467#0 AGTCGCCCCATTGCTTCATGCTACGGGAGGATTGTTAATACGATGCATAGAAGCTAGAGG 120 consensus_6467#2 ------------------------------------------------------------ consensus_6467#1 -------------------------------------------------------AGAAT 5 consensus_6467#0 GCCGCGAGGAAAACCTCTTTCAACCGAGTGCAACCTGAGGAATAGCTATTACCACGG-CA 179 consensus_6467#2 ------------------------------------------------------------ consensus_6467#1 CCCCTGAGGTTAAACTCTTTGAAC-GAGTGCA-CCTGAGGAATAGCTATTACCACGGGCA 63 consensus_6467#0 AGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATT 239 consensus_6467#2 ------------------------------------------------------------ consensus_6467#1 AGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATT 123 consensus_6467#0 T-GCCGGAAAGAAGGGAATGAGAAACGA--GCCAAAAATCATATCTTTATCAGTAAGAAA 296 consensus_6467#2 ------------------------------------------------------------ consensus_6467#1 TTGCCGGAAAGAAGGGAATGAGAAACTGATGCCAAAAATCATATCTTTATCAGTAAGAAA 183 consensus_6467#0 ATTCTTAGCAAATATTAATACAAACGG-AACAAATGACGAAAA----GTGGAATAAAACA 351 consensus_6467#2 ------------------------------------------------------------ consensus_6467#1 ATTCTTAGCAACTATTAATACAAACGNGAACAAATGACGANANCCACGTGGCATAAAACA 243 consensus_6467#0 CT-GACACAACCAGACACACACATATACACACGTACACACATAACAAAACACAAACAAAT 410 consensus_6467#2 ------------------------------------------------------------ consensus_6467#1 CTTGACACAACCAGACACACACATACACACACGTACACACNTAACACAAANCCACCACAA 303 consensus_6467#0 GGAATAGGTACCAACAAATCAACATTATAGGATGCAGCACTTGTTTCGCTGAGTATCAGA 470 consensus_6467#2 ------------------------------------------------------------ consensus_6467#1 ACCAAAACTTGGGGCATTAAGCGGTACCCCAAACCANAATCCACACCCTCTACTAGGACN 363 consensus_6467#0 AACGATAGGATTAGTTAGGAGCATGAAATAAAAGGATATCGTTCGAGTCCTGATTAACAA 530 consensus_6467#2 ------------------------------------------------------------ consensus_6467#1 TGCCAGCCACCNACTGGTCCACCGCCTTGGANAGTACTCCACNCACNCAACCGGAATCAA 423 consensus_6467#0 ATTACGCTAAAAGTGTAA-CGTTGTTTATGCAAGAGTTGCAAACAAGTGAAGTAAGAGAT 589 consensus_6467#2 --------------------------------------------------AGAATCCCCC 10 consensus_6467#1 GAGACTTCANGCTCNCAAGCGCANGCCATTGCAANANTACNCACANGTGCACTAATTCCG 483 * * consensus_6467#0 AGAGCGAGAGAGAGTTAGGGA--AGAGGCGTGCAATTGTAAATGATAAACGATCGCATTT 647 consensus_6467#2 CGAGNTTAAAGAGAGTAGGGA--AGAGGCGTGCAATTGTAAATGATAAACGATCGCATTT 68 consensus_6467#1 CATACGCCNGCAGGTCNCCCCTTGGAAGTTCACAAGCGCACACGCACTCTAGCGGGCCGT 543 ** * *** * * * * * * consensus_6467#0 TAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTAT 707 consensus_6467#2 TAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTAT 128 consensus_6467#1 NAANACACGGGTTGCTCACACCCGGCTTGGGNTACNNTAA----CTTGGCCACAACG--- 596 ** * * ** * ** * * ** * * ** *** consensus_6467#0 GCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGG-TTG 766 consensus_6467#2 GCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGG-TTG 187 consensus_6467#1 ACGCNCTGGGCGCACNACCACAACNGTTGGCAANAGNGCGTTACACACGCCACGGACTTA 656 ** * * * * *** * * * *** * * ** consensus_6467#0 CAAT-CGCAATGGTGATACTG----ATCAAGCTCGATGT--GCAAGAATTTATTCCAGAA 819 consensus_6467#2 CAAT-CGCAATGGTGATACTG----ATCAAGCTCGATGT--GCAAGAATTTATTCCAGAA 240 consensus_6467#1 CACTGCACGACAGGGAAGCAACGGAAGCAAGTNTAACGTCGGTGGCAAAACACAGCA-AA 715 ** * * * * * ** * * **** * ** * ** * ** ** consensus_6467#0 GCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGTAA-- 877 consensus_6467#2 GCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGCTAAC 300 consensus_6467#1 GNGGGGCCCCGTGCTTTGCCACACACA-AACTATNGGCNTATACAA---GCAAAGTTN-- 769 * ** ***** * * * *** * ** ** * * * * consensus_6467#0 TGAAA-TGGTTCATCTGTGTCCGTGG--AAGGATTCAAATTGA-GTTTTTG-----AAGC 928 consensus_6467#2 TGAAACTGGTTCATCTGTGTCCGNTGGCAAGGATTCAAATTGACGCTTCTNCTCGAACGC 360 consensus_6467#1 -GGAA--GATTAANNAACAANCCGNGCAAATGCCCCGGGCCCACACTTTTCCTGNACAAC 826 * ** * ** * * * ** * * * ** * * consensus_6467#0 A-TATATTA----TTAGCAA---TCCAAATG-TCATA-----CATGCG-TATTCTTCTCG 973 consensus_6467#2 ACTATANTTAC-TCTAGCAAAT-CCCAAATGGTCATA-----CATGCGCTACTTCCTTCC 413 consensus_6467#1 ACACGGCTGGCCTCTGGCGCGCAACCAANTTACCACAACTAACNCNCGCCACCCCACACN 886 * * * ** **** * ** * * ** * * consensus_6467#0 TCAAACACCAACATTTGTGAGCTTTTTGAAAAGAACTATTG---CATTTTGTTACGTTGA 1030 consensus_6467#2 TCGN---TCAACACACCAAACACTTCNGCTGAGACTTACCG---NACACACANGAACCTA 467 consensus_6467#1 AGGGN-GGCGGCAACACANGGTCTGCGACAGGCAACTATGGGACCACTAACCCAAACAGC 945 * ** * * ** * * consensus_6467#0 ACCTGCACTATGGTTGAACTATGTTAGGTTGAACCAATAAAAAAGAATTAAAATTTTT-G 1089 consensus_6467#2 ATTGCCACTCTCACCGTA-TACGCTTGAAACCCCCTGCCCACCCTAACTGGCGCCTCTCG 526 consensus_6467#1 ACACACATTACC-CCGAAAGNAAAAAGGCNACGTTTATAAACCTNGATCA-CATTTAGGN 1003 * ** * * * * * * * consensus_6467#0 ATTAATGATTTTCTTTTGATTTTGATTAATGTAGTTG----------------------- 1126 consensus_6467#2 AACCCTAACTGCCTTCTCACGGCAGCTNTTGCANAACCCCCAAACTANCCCACAAAGGCA 586 consensus_6467#1 ACCCCGGTATGCATATNGCTTNGGGGTCACACACCGGGCC---ATCATNCTTACATGGCC 1060 * * * * * consensus_6467#0 ------------------------------------------------------------ consensus_6467#2 CNACNTNTCAANCCACACTCTCCACTCTGGCANCNTCTCCACACCCGGCACCCTNTACCT 646 consensus_6467#1 TCNNTCGGGGGTTCACAACGNCNANTCGA------------------------------- 1089 consensus_6467#0 --------- consensus_6467#2 CACCCATNC 655 consensus_6467#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||