These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1465 fasta sequence [CCGGCACAATGATTCCGGTATCAGCTCGATCACGGGATCGACTAATCTCGGTGGCATCGGGGGCAGCACTACTAGCCGCAATACCACCCAAAACAGCAGCTCGACCAACAGCAACAACAACAACAACAACACGTCCACATCGTCCTCGTCCGTGAAGGAAACGAAACGAAAGCGCATATGGGAAATTCTTGGCGGTCGGTCGAAAAACTCGGCCGACAAGCAGAAAAGTGCCACGCTCGGTCGGGAGAAGGATCGCAAAAAGAAGGGCTCGGTCGACCCCGGCACGGAGGGTGGCGGGAGCGGTGGAAGTGCCAACTCTTCCATGAACGAGGGCGCGAACGCAGGACAGCTGCGACACCGTTGGTCGACGGGCTTGCCACGGCTGCAGCCACTGCCGGCGAATATCAGCAAGGAGAAGTTGTGCTCTTTGCTCGAGTCCAAACTGGCAGATCCTCAGCTGTACTGCGAGTTTGAGCGTATACCGAAACGTAGCGACAGTGCCAGCTATAACTGTGCCTTAGCGGAAGACAATAAAAACAAGAACTTTGATTCAACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACGGGACAATCGCATGGGATATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGCACAATACCAATCCACCAGTTCTCATACACTGTAACGAAGGGGGCGGTCGTACNGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACATAGATATACCACG-ATTGATAGGTCAGATTCGTCAACAGCGGGACAACATCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGCTCATACACTACTTGAAACAAAACAGACTGATTTAAGGCTAATCGGGCGCGGAACACACTGTTGGGTGCTAAATGCTGTAGGCGAATTTTACACCTTCTGGCCACATGCATGATCTTTGTATGGAAGGACTGACGATCATCATGCGACACTAAATCCAAGAAACTAAACGTGCCTTACTAAGCAAGAGCAGAAGTATTGATACAGTGGGAATTGNTCGTTAAAGCAACGAC] [+] EMBL BM602270 [CCGGCACAATGATTCCGGTATCAGCTCGATCACGGGATCGACTAATCTCGGTGGCATCGGGGGCAGCACTACTAGCCGCAATACCACCCAAAACAGCAGCTCGACCAACAGCAACAACAACAACAACAACACGTCCACATCGTCCTCGTCCGTGAAGGAAACGAAACGAAAGCGCATATGGGAAATTCTTGGCGGTCGGTCGAAAAACTCGGCCGACAAGCAGAAAAGTGCCACGCTCGGTCGGGAGAAGGATCGCAAAAAGAAGGGCTCGGTCGACCCCGGCACGGAGGGTGGCGGGAGCGGTGGAAGTGCCAACTCTTCCATGAACGAGGGCGCGAACGCAGGACAGCTGCGACACCGTTGGTCGACGGGCTTGCCACGGCTGCAGCCACTGCCGGCGAATATCAGCAAGGAGAAGTTGTGCTCTTTGCTCGAGTCCAAACTGGCAGATCCTCAGCTGTACTGCGAGTTTGAGCGTATACCGAAACGTAGCGACAGTGCCAGCTATAACTGTGCCTTAGCGGAAGACAATAAAAACAAGAACTTTGATTCAACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACGGGACAATCGCATGGGATATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAAC ] [+] EMBL BX615126 [ GCGCATATGGGAAATTCTTGGCGGTCGGTCGAAAAACTCGGCCGACAAGCAGAAAAGTGCCACGCTCGGTCGGGAGAAGGATCGCAAAAAGAAGGGCTCGGTCGACCCCGGCACGGAGGGTGGCGGTAGCGGTGGAAGTGCCAACTCTTCCATGAACGAGGGCGCGAACGCAGGACAGCTGCGACACCGTTGGTCGACGGGCTTGCCACGGCTGCAGCCACTGCCGGCGAATATCAGCAAGGAGAAGTTGTGCTCTTTGCTCGAGTCCAAACTGGCAGATCCTCAGCTGTACTGCGAGTTTGAGCGTATACCGAAACGTAGCGACAGTGCCAGCTATAACTGTGCCTTAGCGGAAGACAATAAAAACAAGAACTTTGATTCGACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACGGGACAATCGCATGGGATATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGC ] [+] EMBL BX625356 [ TACCGAAACGTAGCGACAGTGCCAGCTATAACTGCGCTTTAGCGGAAGACAATAAAAACAAGAACTTTGATTCAACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACGGGACAATCGCATGGGCTATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGCACAATACCAATCCACCAGTTCTCATACACTGTAACGAAGGGGGCGGTCGTACNGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACATAGATATACCACGAATTGATAG ] [+] EMBL BX621159 [ CTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGCACAATACCAATCCACCAGTTCTCATACACTGTAACGAAGGGGGCGGTCGTACGGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACATAGATATACCACG ATTGATAGGTCAGATTCGTCAACAGCGGGACAACATCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGCTCATACACTACTTGAAACAAAACAGACTGATTTAAGGCTAATCGGGCGCGGAACACACTGTTGGGTGCTAAATGCTGTAGGCGAATTTTACACCTTCTGGCCACATGCATGATCTTTGTATGGAAGGACTGACGATCATCATGCGACACTAAATCCAAGAAACTAAACGTGCCTTACTAAGCAAGAGCAGAAGTATTGATACAGTGGGAATTGNTCGTTAAAGCAACGAC] consensusID : consensus_6471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [AGAATCCCNCGATTAGCTAACACGACACGGGACAATCGCATGGGCTATGTNAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTCTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGACAATACCAATCCACAGTTCTCATAACACTGTAACGAAGGGGGCCGGTCGTACGGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACCATAGATATACCACCGATTGATAGGTCAGATTCGTCAACAGCGGGGACAACATCCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGGTCATACACTACTTGAAACAAAACAGA] [+] EMBL AL695002 [AGAATCCCNCGATTAGCTAACACGACACGGGACAATCGCATGGGCTATGTNAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTCTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGACAATACCAATCCACAGTTCTCATAACACTGTAACGAAGGGGGCCGGTCGTACGGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACCATAGATATACCACCGATTGATAGGTCAGATTCGTCAACAGCGGGGACAACATCCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGGTCATACACTACTTGAAACAAAACAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6471#0 CCGGCACAATGATTCCGGTATCAGCTCGATCACGGGATCGACTAATCTCGGTGGCATCGG 60 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 GGGCAGCACTACTAGCCGCAATACCACCCAAAACAGCAGCTCGACCAACAGCAACAACAA 120 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 CAACAACAACACGTCCACATCGTCCTCGTCCGTGAAGGAAACGAAACGAAAGCGCATATG 180 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 GGAAATTCTTGGCGGTCGGTCGAAAAACTCGGCCGACAAGCAGAAAAGTGCCACGCTCGG 240 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 TCGGGAGAAGGATCGCAAAAAGAAGGGCTCGGTCGACCCCGGCACGGAGGGTGGCGGGAG 300 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 CGGTGGAAGTGCCAACTCTTCCATGAACGAGGGCGCGAACGCAGGACAGCTGCGACACCG 360 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 TTGGTCGACGGGCTTGCCACGGCTGCAGCCACTGCCGGCGAATATCAGCAAGGAGAAGTT 420 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 GTGCTCTTTGCTCGAGTCCAAACTGGCAGATCCTCAGCTGTACTGCGAGTTTGAGCGTAT 480 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 ACCGAAACGTAGCGACAGTGCCAGCTATAACTGTGCCTTAGCGGAAGACAATAAAAACAA 540 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 GAACTTTGATTCAACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACG 600 consensus_6471#1 -----------------------------AGAATC-CCNCGATTAGCTAACAC-GACACG 29 * ** * ** ******** ****** consensus_6471#0 GGACAATCGCATGGGATATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCA 660 consensus_6471#1 GGACAATCGCATGGGCTATGTNAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCA 89 *************** ***** ************************************** consensus_6471#0 AAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCA 720 consensus_6471#1 AAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCA 149 ************************************************************ consensus_6471#0 GTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACAT 780 consensus_6471#1 GTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACAT 209 ************************************************************ consensus_6471#0 CCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTC 840 consensus_6471#1 CCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTC 269 ************************************************************ consensus_6471#0 GCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCG 900 consensus_6471#1 GCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCG 329 ************************************************************ consensus_6471#0 ATATCGT-TCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCG 959 consensus_6471#1 ATATCGTCTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCG 389 ******* **************************************************** consensus_6471#0 ATGTGGGACACTTTTT-AGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATT 1018 consensus_6471#1 ATGTGGGACACTTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATT 449 **************** ******************************************* consensus_6471#0 GCGGAAGTGCCACCATCGCACAATACCAATCCACCAGTTCTCATA-CACTGTAACGAAGG 1077 consensus_6471#1 GCGGAAGTGCCACCATCG-ACAATACCAATCCAC-AGTTCTCATAACACTGTAACGAAGG 507 ****************** *************** ********** ************** consensus_6471#0 GGGC-GGTCGTACNGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATA 1136 consensus_6471#1 GGGCCGGTCGTACGGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATA 567 **** ******** ********************************************** consensus_6471#0 ATCAGGAC-ATAGATATACCAC-GATTGATAGGTCAGATTCGTCAACAGCGGG-ACAACA 1193 consensus_6471#1 ATCAGGACCATAGATATACCACCGATTGATAGGTCAGATTCGTCAACAGCGGGGACAACA 627 ******** ************* ****************************** ****** consensus_6471#0 TC-ATACCATCATTAGCGCAGTACAAATTCATACATGCACTGCTCATACACTACTTGAAA 1252 consensus_6471#1 TCCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGGTCATACACTACTTGAAA 687 ** *************************************** ***************** consensus_6471#0 CAAAACAGACTGATTTAAGGCTAATCGGGCGCGGAACACACTGTTGGGTGCTAAATGCTG 1312 consensus_6471#1 CAAAACAGA--------------------------------------------------- 696 ********* consensus_6471#0 TAGGCGAATTTTACACCTTCTGGCCACATGCATGATCTTTGTATGGAAGGACTGACGATC 1372 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 ATCATGCGACACTAAATCCAAGAAACTAAACGTGCCTTACTAAGCAAGAGCAGAAGTATT 1432 consensus_6471#1 ------------------------------------------------------------ consensus_6471#0 GATACAGTGGGAATTGNTCGTTAAAGCAACGAC 1465 consensus_6471#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||