|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1465 fasta sequence
[CCGGCACAATGATTCCGGTATCAGCTCGATCACGGGATCGACTAATCTCGGTGGCATCGGGGGCAGCACTACTAGCCGCAATACCACCCAAAACAGCAGCTCGACCAACAGCAACAACAACAACAACAACACGTCCACATCGTCCTCGTCCGTGAAGGAAACGAAACGAAAGCGCATATGGGAAATTCTTGGCGGTCGGTCGAAAAACTCGGCCGACAAGCAGAAAAGTGCCACGCTCGGTCGGGAGAAGGATCGCAAAAAGAAGGGCTCGGTCGACCCCGGCACGGAGGGTGGCGGGAGCGGTGGAAGTGCCAACTCTTCCATGAACGAGGGCGCGAACGCAGGACAGCTGCGACACCGTTGGTCGACGGGCTTGCCACGGCTGCAGCCACTGCCGGCGAATATCAGCAAGGAGAAGTTGTGCTCTTTGCTCGAGTCCAAACTGGCAGATCCTCAGCTGTACTGCGAGTTTGAGCGTATACCGAAACGTAGCGACAGTGCCAGCTATAACTGTGCCTTAGCGGAAGACAATAAAAACAAGAACTTTGATTCAACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACGGGACAATCGCATGGGATATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGCACAATACCAATCCACCAGTTCTCATACACTGTAACGAAGGGGGCGGTCGTACNGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACATAGATATACCACG-ATTGATAGGTCAGATTCGTCAACAGCGGGACAACATCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGCTCATACACTACTTGAAACAAAACAGACTGATTTAAGGCTAATCGGGCGCGGAACACACTGTTGGGTGCTAAATGCTGTAGGCGAATTTTACACCTTCTGGCCACATGCATGATCTTTGTATGGAAGGACTGACGATCATCATGCGACACTAAATCCAAGAAACTAAACGTGCCTTACTAAGCAAGAGCAGAAGTATTGATACAGTGGGAATTGNTCGTTAAAGCAACGAC]
[+] EMBL BM602270 [CCGGCACAATGATTCCGGTATCAGCTCGATCACGGGATCGACTAATCTCGGTGGCATCGGGGGCAGCACTACTAGCCGCAATACCACCCAAAACAGCAGCTCGACCAACAGCAACAACAACAACAACAACACGTCCACATCGTCCTCGTCCGTGAAGGAAACGAAACGAAAGCGCATATGGGAAATTCTTGGCGGTCGGTCGAAAAACTCGGCCGACAAGCAGAAAAGTGCCACGCTCGGTCGGGAGAAGGATCGCAAAAAGAAGGGCTCGGTCGACCCCGGCACGGAGGGTGGCGGGAGCGGTGGAAGTGCCAACTCTTCCATGAACGAGGGCGCGAACGCAGGACAGCTGCGACACCGTTGGTCGACGGGCTTGCCACGGCTGCAGCCACTGCCGGCGAATATCAGCAAGGAGAAGTTGTGCTCTTTGCTCGAGTCCAAACTGGCAGATCCTCAGCTGTACTGCGAGTTTGAGCGTATACCGAAACGTAGCGACAGTGCCAGCTATAACTGTGCCTTAGCGGAAGACAATAAAAACAAGAACTTTGATTCAACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACGGGACAATCGCATGGGATATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAAC ]
[+] EMBL BX615126 [ GCGCATATGGGAAATTCTTGGCGGTCGGTCGAAAAACTCGGCCGACAAGCAGAAAAGTGCCACGCTCGGTCGGGAGAAGGATCGCAAAAAGAAGGGCTCGGTCGACCCCGGCACGGAGGGTGGCGGTAGCGGTGGAAGTGCCAACTCTTCCATGAACGAGGGCGCGAACGCAGGACAGCTGCGACACCGTTGGTCGACGGGCTTGCCACGGCTGCAGCCACTGCCGGCGAATATCAGCAAGGAGAAGTTGTGCTCTTTGCTCGAGTCCAAACTGGCAGATCCTCAGCTGTACTGCGAGTTTGAGCGTATACCGAAACGTAGCGACAGTGCCAGCTATAACTGTGCCTTAGCGGAAGACAATAAAAACAAGAACTTTGATTCGACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACGGGACAATCGCATGGGATATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGC ]
[+] EMBL BX625356 [ TACCGAAACGTAGCGACAGTGCCAGCTATAACTGCGCTTTAGCGGAAGACAATAAAAACAAGAACTTTGATTCAACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACGGGACAATCGCATGGGCTATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGCACAATACCAATCCACCAGTTCTCATACACTGTAACGAAGGGGGCGGTCGTACNGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACATAGATATACCACGAATTGATAG ]
[+] EMBL BX621159 [ CTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGCACAATACCAATCCACCAGTTCTCATACACTGTAACGAAGGGGGCGGTCGTACGGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACATAGATATACCACG ATTGATAGGTCAGATTCGTCAACAGCGGGACAACATCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGCTCATACACTACTTGAAACAAAACAGACTGATTTAAGGCTAATCGGGCGCGGAACACACTGTTGGGTGCTAAATGCTGTAGGCGAATTTTACACCTTCTGGCCACATGCATGATCTTTGTATGGAAGGACTGACGATCATCATGCGACACTAAATCCAAGAAACTAAACGTGCCTTACTAAGCAAGAGCAGAAGTATTGATACAGTGGGAATTGNTCGTTAAAGCAACGAC]
consensusID : consensus_6471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[AGAATCCCNCGATTAGCTAACACGACACGGGACAATCGCATGGGCTATGTNAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTCTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGACAATACCAATCCACAGTTCTCATAACACTGTAACGAAGGGGGCCGGTCGTACGGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACCATAGATATACCACCGATTGATAGGTCAGATTCGTCAACAGCGGGGACAACATCCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGGTCATACACTACTTGAAACAAAACAGA]
[+] EMBL AL695002 [AGAATCCCNCGATTAGCTAACACGACACGGGACAATCGCATGGGCTATGTNAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCAAAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCAGTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACATCCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTCGCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCGATATCGTCTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCGATGTGGGACACTTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATTGCGGAAGTGCCACCATCGACAATACCAATCCACAGTTCTCATAACACTGTAACGAAGGGGGCCGGTCGTACGGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATAATCAGGACCATAGATATACCACCGATTGATAGGTCAGATTCGTCAACAGCGGGGACAACATCCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGGTCATACACTACTTGAAACAAAACAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6471#0 CCGGCACAATGATTCCGGTATCAGCTCGATCACGGGATCGACTAATCTCGGTGGCATCGG 60
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 GGGCAGCACTACTAGCCGCAATACCACCCAAAACAGCAGCTCGACCAACAGCAACAACAA 120
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 CAACAACAACACGTCCACATCGTCCTCGTCCGTGAAGGAAACGAAACGAAAGCGCATATG 180
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 GGAAATTCTTGGCGGTCGGTCGAAAAACTCGGCCGACAAGCAGAAAAGTGCCACGCTCGG 240
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 TCGGGAGAAGGATCGCAAAAAGAAGGGCTCGGTCGACCCCGGCACGGAGGGTGGCGGGAG 300
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 CGGTGGAAGTGCCAACTCTTCCATGAACGAGGGCGCGAACGCAGGACAGCTGCGACACCG 360
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 TTGGTCGACGGGCTTGCCACGGCTGCAGCCACTGCCGGCGAATATCAGCAAGGAGAAGTT 420
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 GTGCTCTTTGCTCGAGTCCAAACTGGCAGATCCTCAGCTGTACTGCGAGTTTGAGCGTAT 480
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 ACCGAAACGTAGCGACAGTGCCAGCTATAACTGTGCCTTAGCGGAAGACAATAAAAACAA 540
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 GAACTTTGATTCAACGTTTCTACCATACGATAACAATCGCGTACGGCTAACACCGACACG 600
consensus_6471#1 -----------------------------AGAATC-CCNCGATTAGCTAACAC-GACACG 29
* ** * ** ******** ******
consensus_6471#0 GGACAATCGCATGGGATATGTAAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCA 660
consensus_6471#1 GGACAATCGCATGGGCTATGTNAATGCGTCCCACATAACTAGCACTGTTGGCAACAAGCA 89
*************** ***** **************************************
consensus_6471#0 AAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCA 720
consensus_6471#1 AAGATTTTACATTGTTGCCGAAAGCCCGAACGACACGCTGACGACAAACATTTTCTGGCA 149
************************************************************
consensus_6471#0 GTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACAT 780
consensus_6471#1 GTGTGTCTGGGAAGCGGACGTCTATCTGTTGGTGCAACTATCCAAAGAGCTTAACTACAT 209
************************************************************
consensus_6471#0 CCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTC 840
consensus_6471#1 CCCACAAACCAGCGAACGGTGTTTGGAGTATGGGCAGTACCAAGTGTGGCGCGAGTTCTC 269
************************************************************
consensus_6471#0 GCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCG 900
consensus_6471#1 GCAAGAAACCGATCGGTGTACAACGAGCAAATTGCGCGTATACCACACGCAAAGCCGGCG 329
************************************************************
consensus_6471#0 ATATCGT-TCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCG 959
consensus_6471#1 ATATCGTCTCAGTTTGGCATATATCCTACACGGAATGGGCCGATCAGAACTGTCCGGGCG 389
******* ****************************************************
consensus_6471#0 ATGTGGGACACTTTTT-AGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATT 1018
consensus_6471#1 ATGTGGGACACTTTTTTAGGATTCTTGGAAGAGTTGAATTCAGTACGGCTAGCGTCTATT 449
**************** *******************************************
consensus_6471#0 GCGGAAGTGCCACCATCGCACAATACCAATCCACCAGTTCTCATA-CACTGTAACGAAGG 1077
consensus_6471#1 GCGGAAGTGCCACCATCG-ACAATACCAATCCAC-AGTTCTCATAACACTGTAACGAAGG 507
****************** *************** ********** **************
consensus_6471#0 GGGC-GGTCGTACNGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATA 1136
consensus_6471#1 GGGCCGGTCGTACGGGCGTGACCTTAGTGGCGGATTTGCTACTTTACACACTGGATCATA 567
**** ******** **********************************************
consensus_6471#0 ATCAGGAC-ATAGATATACCAC-GATTGATAGGTCAGATTCGTCAACAGCGGG-ACAACA 1193
consensus_6471#1 ATCAGGACCATAGATATACCACCGATTGATAGGTCAGATTCGTCAACAGCGGGGACAACA 627
******** ************* ****************************** ******
consensus_6471#0 TC-ATACCATCATTAGCGCAGTACAAATTCATACATGCACTGCTCATACACTACTTGAAA 1252
consensus_6471#1 TCCATACCATCATTAGCGCAGTACAAATTCATACATGCACTGGTCATACACTACTTGAAA 687
** *************************************** *****************
consensus_6471#0 CAAAACAGACTGATTTAAGGCTAATCGGGCGCGGAACACACTGTTGGGTGCTAAATGCTG 1312
consensus_6471#1 CAAAACAGA--------------------------------------------------- 696
*********
consensus_6471#0 TAGGCGAATTTTACACCTTCTGGCCACATGCATGATCTTTGTATGGAAGGACTGACGATC 1372
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 ATCATGCGACACTAAATCCAAGAAACTAAACGTGCCTTACTAAGCAAGAGCAGAAGTATT 1432
consensus_6471#1 ------------------------------------------------------------
consensus_6471#0 GATACAGTGGGAATTGNTCGTTAAAGCAACGAC 1465
consensus_6471#1 ---------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||