These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence [CGATTTATTTAGTGATCAAAATAATACTTGAAACCACGCAATAAACACATCGGAGGAATTATCTATATATTGCACCGCGTTTTTTTGGGGCTGAGATTCCGGTCCGGTAGTGTTTGTGTGTTTTGTGCAGCAATTGGTATCACAGATCGGTTCTAAAGATCGGTCTCGTAAGTTTTGTGAGGGAATGGTTCTCGATGATGTAAAATAATAAGCTTTAGCTAACTAAATCTACTTGTAAGTCTTGCACTACTAATACTAATACATCTCTCTCTCTCTCTCTCTGTCGCTCTCTTAGTGTAAGAGGGATTAAAAATTAATGGCAGTATCGTTTGTGTGATCGTGCACATGATTAAGGACGGATGTGTGTAAAAAATGTGTCTTTTTCCCCCACTAAAATGGCAATGATAGTATGGTAAGGGAGGAAAGGTAGTTCGTTGTTTCGTTCGTTGGCACATGTTAGTGGATGGAGGGGGTTATTTATATCGGTTTGGTAACTATTCCCGTACCCTTAGCTTACCATTACCATACTACTTTCTCAGCTTCATCTGACTGATCATGGCCGTACCGTGGTCGGGCTGGATCTGCTGCTTGTACTCGGCAACGCACGTCGCGGTGAGCGATTTCGCCCGGGGGCCGCTGGTAGCACGCATTGTCGTAGCACCGTTCCAGCTCCTGGATGAACTCCATGATCAGCTTCCCATTGCCACCGTTCGGGCCGACGTATAGTCGCACTGGTACGAGTATCGCTTCATGTCCCGGATGCA] [+] EMBL CNS08QTV [CGATTTATTTAGTGATCAAAATAATACTTGAAACCACGCAATAAACACATCGGAGGAATTATCTATATATTGCACCGCGTTTTTTTGGGGCTGAGATTCCGGTCCGGTAGTGTTTGTGTGTTTTGTGCAGCAATTGGTATCACAGATCGGTTCTAAAGATCGGTCTCGTAAGTTTTGTGAGGGAATGGTTCTCGATGATGTAAAATAATAAGCTTTAGCTAACTAAATCTACTTGTAAGTCTTGCACTACTAATACTAATACATCTCTCTCTCTCTCTCTCTGTCGCTCTCTTAGTGTAAGAGGGATTAAAAATTAATGGCAGTATCGTTTGTGTGATCGTGCACATGATTAAGGACGGATGTGTGTAAAAAATGTGTCTTTTTCCCCCACTAAAATGGCAATGATAGTATGGTAAGGGAGGAAAGGTAGTTCGTTGTTTCGTTCGTTGGCACATGTTAGTGGATGGAGGGGGTTATTTATATCGGTTTGGTAACTATTCCCGTACCCTTAGCTTACCATTACCATACTACTTTCTCAGCTTCATCTGACTGATCATGGCCGTACCGTGGTCGGGCTGGATCTGCTGCTTGTACTCGGCAACGCACGTCGCGGTGAGCGATTTCGCCCGGGGGCCGCTGGTAGCACGCATTGTCGTAGCACCGTTCCAGCTCCTGGATGAACTCCATGATCAGCTTCCCATTGCCACCGTTCGGGCCGACGTATAGTCGCACTGGTACGAGTATCGCTTCATGTCCCGGATGCA] consensusID : consensus_6480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 611 fasta sequence [GCACATGCCTGCCTTTTTTTTANTTTTTTTTATAGGTAATTCCTCCGATGTGTTTATTGCGTGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACAACGGCAAGGAGTTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACGCAAACGCTCCTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTAATGATGGTGAAGGAATCGATGACAGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAGTCGCGGCTTGTGAATTTTCCGGGCACTCCAGGGTCGGGGGGTTCATTTTGTTAGATGAACGGCTCTCGCCCCTCCTTGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGATTACGGTACGGTTCCTCGTACGAACCATTGTACACCTTGTAGTCGTAGATCGGAAACAGCCGCTCGTACGA] [+] EMBL BX466705 [GCACATGCCTGCCTTTTTTTTANTTTTTTTTATAGGTAATTCCTCCGATGTGTTTATTGCGTGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACAACGGCAAGGAGTTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACGCAAACGCTCCTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTAATGATGGTGAAGGAATCGATGACAGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAGTCGCGGCTTGTGAATTTTCCGGGCACTCCAGGGTCGGGGGGTTCATTTTGTTAGATGAACGGCTCTCGCCCCTCCTTGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGATTACGGTACGGTTCCTCGTACGAACCATTGTACACCTTGTAGTCGTAGATCGGAAACAGCCGCTCGTACGA] [-] EMBL BX623038 [ GTAATTCCTCCGATGTGTTTATTGCGTGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACAACGGCAAGGAGTTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACGCAAACGCTCCTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTAATGATGGTGAAGGAATCGATGACAGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGC ] [+] EMBL AGA283447 [ tttttTTTGGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACGCAAACGCTCCTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTAATGATGGTGAAGGAATCGATGACAGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATTCATTGATCGCCTTCATGCGCG ] consensusID : consensus_6480#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [TGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACATCGGCCAGGAATTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAGTGGAAAAATATAACGCATGATGGTGTTTGTGTGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCCGCCGCTGCTCTTCGCACGCAAACGCTCTTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTTATGATGGTGAAGGAATCGATGACCGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAGTCGCGGCTGTGAATCGCACTCCAGGTTGGTATTTTGTTGATGAACGGCTCCCGTCCCTCCTTGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGATTACGGTACGGTTCCTCGTACCGG] [-] EMBL BM646249 [TGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACATCGGCCAGGAATTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAGTGGAAAAATATAACGCATGATGGTGTTTGTGTGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCCGCCGCTGCTCTTCGCACGCAAACGCTCTTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTTATGATGGTGAAGGAATCGATGACCGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAGTCGCGGCTGTGAATCGCACTCCAGGTTGGTATTTTGTTGATGAACGGCTCCCGTCCCTCCTTGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGATTACGGTACGGTTCCTCGTACCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6480#1 --------------------------------------GCACATGCCTGCCTTTTTTTTA 22 consensus_6480#2 ------------------------------------------------------------ consensus_6480#0 CGATTTATTTAGTGATCAAAATAATACTTGAAACCACGCAATAAACACATCGGAGGAATT 60 consensus_6480#1 NTTTTTTTTATAGGTAATTCCTCCGATGTGTTTATTGCGTGGTTTCA-AGTATTATTTTG 81 consensus_6480#2 ---------------------------------------TGGTTTCA-AGTATTATTTTG 20 consensus_6480#0 ATCTATATATTGCACCGCGTTTTTTTGGGGCTGAGATTCCGGTCCGGTAGTGTTTGTGTG 120 *** *** ** * ** consensus_6480#1 ATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACAACGGCAAGGAGTTTCATATTT 141 consensus_6480#2 ATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACATCGGCCAGGAATTTCATATTT 80 consensus_6480#0 TTTTGTGCAGCAATTGGTATCACAGATCGGTTCTAAAGATCGGTCTCGTAAGTTTTGTGA 180 * * * *** * * ** ** *** ** * *** * * * * consensus_6480#1 GGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGT 201 consensus_6480#2 GGTAGTGGCAAAAGATAGGATAAAAGTGGAAAAATATAACGCATGATGGTGTTTGTGTGT 140 consensus_6480#0 GGGAATGGTTCTCGATGATGTAAAA-TAATAAGCTTTAGCTAACTA-AATCTACTTGTAA 238 ** * *** *** ***** * ** * ** * * * * * ** consensus_6480#1 GCGTATGCGCT-TTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACG 260 consensus_6480#2 GCGTATGCGCT-TTAAAGGAGATTCGCTTCCGCCTCAGCGCCGCCGCTGCTCTTCGCACG 199 consensus_6480#0 GTCT-TGCACTACTAATACTAATACATCTCTCTCTCTCTCTCTCTGTCGCTCTCTTAGTG 297 * * *** ** *** ** * ** *** * * ***** * consensus_6480#1 CAAACGCTCCTGCTCGTC--CCGCTCCAGCAACTGTTTGTACG-GCAAATGTTCGTCCTT 317 consensus_6480#2 CAAACGCTCTTGCTCGTC--CCGCTCCAGCAACTGTTTGTACG-GCAAATGTTCGTCCTT 256 consensus_6480#0 TAAGAGGGATTAAAAATTAATGGCAGTATCGTTTGTGTGATCGTGCACATGATTAAGGAC 357 ** * * * ** * * *** ** ** *** *** * consensus_6480#1 AATGATGGTGAAGGAATCGATGACAGCACCCTCCT----TGTCGACGGAAATTTGCTCAA 373 consensus_6480#2 TATGATGGTGAAGGAATCGATGACCGCACCCTCCT----TGTCGACGGAAATTTGCTCAA 312 consensus_6480#0 GGATGTGTGTAAAAAATGTGTCTTTTTCCCCCACTAAAATGGCAATGATAGTATGGTAAG 417 ** ** *** * *** ** ** * * * * * ** * * consensus_6480#1 AGTACAGATGCGATCCATTGAT-----CGCCTTCATGCGCGTGTAGCCATAGTCG----- 423 consensus_6480#2 AGTACAGATGCGATCCATTGAT-----CGCCTTCATGCGCGTGTAGCCATAGTCG----- 362 consensus_6480#0 GGAGGAAAGGTAGTTCGTTGTTTCGTTCGTTGGCACATGTTAGTGGATGGAGGGGGTTAT 477 * * * * * * *** * ** ** * ** * ** * consensus_6480#1 ------CGGCTTGTGAATTTTCCGGGCACTCCAGGGTCGGGGGGTTCATTTTGTTAGATG 477 consensus_6480#2 ------CGGCT-GTGAATC------GCACTCCAGGTTGG-------TATTTTGTT-GATG 401 consensus_6480#0 TTATATCGGTTTGGTAACTATTCCCGTACCCTTAGCTTACCATTACCATACTACTTTCTC 537 *** * * ** * ** * * * ** * * * consensus_6480#1 AACGGCTCTCGCCCCTCCTTG----CACC-CAGCCGAACCGGTGACGAGG--TGTACGGG 530 consensus_6480#2 AACGGCTCCCGTCCCTCCTTG----CACC-CAGCCGAACCGGTGACGAGG--TGTACGGG 454 consensus_6480#0 AGCTTCATCTGACTGATCATGGCCGTACCGTGGTCGGGCTGGATCTGCTGCTTGTACTCG 597 * * * * * * ** *** * ** * ** * * ***** * consensus_6480#1 GGCACGGGGATTACGGTA--CGGTTCCTCGTACGAACCATTG-TACACCTTGTAGTCGTA 587 consensus_6480#2 GGCACGGGGATTACGGTA--CGGTTCCTCGTACCGG------------------------ 488 consensus_6480#0 GCAACGCACGTCGCGGTGAGCGATTTCGCCCGGGGGCCGCTGGTAGCACGCATTGTCGTA 657 * *** * **** ** ** * * consensus_6480#1 GATCGGAAACAGCCGCTCGTACGA------------------------------------ 611 consensus_6480#2 ------------------------------------------------------------ consensus_6480#0 GCACCGTTCCAGCTCCTGGATGAACTCCATGATCAGCTTCCCATTGCCACCGTTCGGGCC 717 consensus_6480#1 ----------------------------------------------- consensus_6480#2 ----------------------------------------------- consensus_6480#0 GACGTATAGTCGCACTGGTACGAGTATCGCTTCATGTCCCGGATGCA 764 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||