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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1331 fasta sequence
[CCGCACGGTCCCAAAATCGAAGTCGAATTCCTTCGGTGCGATAAAAAAAAAGAAGCCCCCTTGTTGTATATCGAGAGCCGTCACTACGCACACACAGCAGAAGTTGGAACGGGCAAAGGCGAAAACCTACCAAATAGTGCTGTGGTGCTGAACCGTTCGGCAGACGAAAAGTGCGTGCGTGCGTGCGTGCTTGCGTTACTGAGTGTGTCCGGCGGAGGAGGTACTCCGCACAGGTGGTGAAAAAGAAACAAAGCCGTGAAAGTTTGCGAAGGGTGCTTGGATTTGTCGACCGAAGACGGCGGCGACCCGTTCAACGACAGGAAGAGGAATTGTGTGTGCGTGTGTGCGTGTGTGTGCACTTGTAAGAAAGGCACAGACGGTACAGAACAAAGTGTGTTGTGCGGGGTGTGAAAGCGTTTGCGCTGTTCTACAGCGTTTTGTGCGTGCAAACTAAACAGTTGACCAGCGGCAGCCCATCAACAGCACCAGCATGGAGTCACTGATTCCGATCGTGAACAAGCTGCAGGATGCGTTCACGCAGATGGGGGTGCATATGCAGCTTGACCTGCCACAGATCGCGGTGGTCGGCGGCCAGTCGGCAGGAAAATCGTCCGTGCTGGAAAATTTCGTCGGAAGAGATTTCCTCCCCCGAGGATCCGGCATCGTAACGCGACGACCATTGATTTTACAGCTAATCAATGGAACTGTGGAATTTGGAGAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGAAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAAGTACCGATCGGCGATCAGCCAGCCGACATTGAGAACCAGATCAAGGGCATGATCTTTCAGTTCATCCGCAAGGAAACGTGTCTGATTTTGGCCGTCACGCCCGCCAACACCGATTTGGCCAACAGTGATGCGCTCAAGCTGGCCAAAGAGGTCGACCCGCAGGGCGTCCGGACGATCGGTGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGA]
[+] EMBL BM648618 [CCGCACGGTCCCAAAATCGAAGTCGAATTCCTTCGGTGCGATAAAAAAAAAGAAGCCCCCTTGTTGTATATCGAGAGCCGTCACTACGCACACACAGCAGAAGTTGGAACGGGCAAAGGCGAAAACCTACCAAATAGTGCTGTGGTGCTGAACCGTTCGGCAGACGAAAAGTGCGTGCGTGCGTGCGTGCTTGCGTTACTGAGTGTGTCCGGCGGAGGAGGTACTCCGCACAGGTGGTGAAAAAGAAACAAAGCCGTGAAAGTTTGCGAAGGGTGCTTGGATTTGTCGACCGAAGACGGCGGCGACCCGTTCAACGACAGGAAGAGGAATTGTGTGTGCGTGTGTGCGTGTGTGTGCACTTGTAAGAAAGGCACAGACGGTACAGAACAAAGTGTGTTGTGCGGGGTGTGAAAGCGTTTGCGCTGTTCTACAGCGTTTTGTGCGTGCAAACTAAACAGTTGACCAGCGGCAGCCCATCAACAGCACCAGCATGGAGTCACTGATTCCGATCGTGAACAAGCTGCAGGATGCGTTCACGCAGATGGGGGTGCATATGCAGCTTGACCTGCCACAGATCGCGGTGGTCGGCGGCCAGTCGGCAGGAAAATCGTCCGTGCTGGAAAATTTCGTCGGAAGAGATTTCCTCCCCCGAGGATCCGGCATCGTAACGCGACGAC ]
[+] EMBL BM593760 [ ccGCTTGGATTTGTCGACCGAAGACGGCGGGGACCCGTTCAACGACAGGAAGAGGAATTGTGTGTGCGTGTGTGCGTGTGTGTGCACTTGTAAGAAAGGCACAGACGGTACAGAACAAAGTGTGTTGTGCGGGGTGTGAAAGCGTTTGCGCTGTTCTACAGCGTTTTGTGCGTGCAAACTAAACAGTTGACCAGGGGCAGCCCATCAACAGCACCAGCATGGAGTCACTGATTCCGATCGTGAACAAGCTGCAGGATGCGTTCACGCAGATGGGGGTGCATATGCAGCTTGACCTGCCACAGATCGCGGTGGTCGGCGGCCAGTCGGCAGGAAAATCGTCCGTGCTGGAAAATTTCGTCGGAAGAGATTTCCTCCCCCGAGGATCCGGCATCGTAACGCGACGACCATTGATTTTACAGCTAATCAATGGAACTGTGGAATTTGGAGAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGAAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAAGTACCGATCGGCGATCAGCCAGCCGACATTGAGAACCAGATCA ]
[+] EMBL BM636163 [ ccgGTCGGAAGAGATTTCCTCCCCCGAGGATCCGGCATCGTAACGCGACGACCATTGATTTTACAGCTAATCAATGGAACTGTGGAATTTGGAGAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGAAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAGGTACCGATCGGCGATCAGCCAGCCGACATTGAGAACCAGATCAAGGGCATGATCTTTCAGTTCATCCGCAAGGAAACGTGTCTGATTTTGGCCGTCACGCCCGCCAACACCGATTTGGCCAACAGTGATGCGCTCAAGCTGGCCAAAGAGGTCGACCCGCAGGGCGTCCGGACGATCGGTGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGA]
consensusID : consensus_6486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[GAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGGAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAGGTACCGATCGGCGATCAGCCAGCCGATATTGAGAACCAGATCAAGGGCATGATCTTTCAGTTCATCCGCAGGCGTCCGGACGATCGGTGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCCCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGGCAATGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAAGCAGATGCTAACGCTGGAGAAGCATGTGCATCAGTACAAACATTTCC]
[+] EMBL CNS09IYG [GAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGGAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAGGTACCGATCGGCGATCAGCCAGCCGATATTGAGAACCAGATCAAGGGCATGATCTTTCAGTTCATCCGCAGGCGTCCGGACGATCGGTGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCCCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGGCAATGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAAGCAGATGCTAACGCTGGAGAAGCATGTGCATCAGTACAAACATTTCC]
consensusID : consensus_6486#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[CCGCCCACGCGTCCGCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGCGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAAGCAGATGCTAACGCTGGAGAAGGATGTGGATCAGTACAAACATTTCCGCCCGGACGATCCAAGCATCAAGACGAAGGCTATGCTGCAAATGATCCAGCAACTGCAGTCGGATTTCGAGCGCACAATTGAAGGTTCCGGTTCGGCGCTAGTCAACACGAACGAACTTTCTGGCGGTGCCAAGATCAATAGAATATTCCACGAGCGATTGCGTTTCGAGATCGTCAAGATGTCGTGCGACGAGAAGGAGCTGCGGCGTGAA]
[+] EMBL BM612430 [CCGCCCACGCGTCCGCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGCGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAAGCAGATGCTAACGCTGGAGAAGGATGTGGATCAGTACAAACATTTCCGCCCGGACGATCCAAGCATCAAGACGAAGGCTATGCTGCAAATGATCCAGCAACTGCAGTCGGATTTCGAGCGCACAATTGAAGGTTCCGGTTCGGCGCTAGTCAACACGAACGAACTTTCTGGCGGTGCCAAGATCAATAGAATATTCCACGAGCGATTGCGTTTCGAGATCGTCAAGATGTCGTGCGACGAGAAGGAGCTGCGGCGTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6486#0 CCGCACGGTCCCAAAATCGAAGTCGAATTCCTTCGGTGCGATAAAAAAAAAGAAGCCCCC 60
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 TTGTTGTATATCGAGAGCCGTCACTACGCACACACAGCAGAAGTTGGAACGGGCAAAGGC 120
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 GAAAACCTACCAAATAGTGCTGTGGTGCTGAACCGTTCGGCAGACGAAAAGTGCGTGCGT 180
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 GCGTGCGTGCTTGCGTTACTGAGTGTGTCCGGCGGAGGAGGTACTCCGCACAGGTGGTGA 240
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 AAAAGAAACAAAGCCGTGAAAGTTTGCGAAGGGTGCTTGGATTTGTCGACCGAAGACGGC 300
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 GGCGACCCGTTCAACGACAGGAAGAGGAATTGTGTGTGCGTGTGTGCGTGTGTGTGCACT 360
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 TGTAAGAAAGGCACAGACGGTACAGAACAAAGTGTGTTGTGCGGGGTGTGAAAGCGTTTG 420
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 CGCTGTTCTACAGCGTTTTGTGCGTGCAAACTAAACAGTTGACCAGCGGCAGCCCATCAA 480
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 CAGCACCAGCATGGAGTCACTGATTCCGATCGTGAACAAGCTGCAGGATGCGTTCACGCA 540
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 GATGGGGGTGCATATGCAGCTTGACCTGCCACAGATCGCGGTGGTCGGCGGCCAGTCGGC 600
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 AGGAAAATCGTCCGTGCTGGAAAATTTCGTCGGAAGAGATTTCCTCCCCCGAGGATCCGG 660
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 CATCGTAACGCGACGACCATTGATTTTACAGCTAATCAATGGAACTGTGGAATTTGGAGA 720
consensus_6486#1 ----------------------------------------------------------GA 2
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 GTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGA 780
consensus_6486#1 GTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGA 62
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 AGCGGAAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCT 840
consensus_6486#1 AGCGGGAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCT 122
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 TCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAA 900
consensus_6486#1 TCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAA 182
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 AGTACCGATCGGCGATCAGCCAGCCGACATTGAGAACCAGATCAAGGGCATGATCTTTCA 960
consensus_6486#1 GGTACCGATCGGCGATCAGCCAGCCGATATTGAGAACCAGATCAAGGGCATGATCTTTCA 242
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 GTTCATCCGCAAGGAAACGTGTCTGATTTTGGCCGTCACGCCCGCCAACACCGATTTGGC 1020
consensus_6486#1 GTTCATCCGCA------------------------------------------------- 253
consensus_6486#2 ------------------------------------------------------------
consensus_6486#0 CAACAGTGATGCGCTCAAGCTGGCCAAAGAGGTCGACCCGCAGGGCGTCCGGACGATCGG 1080
consensus_6486#1 -------------------------------------------GGCGTCCGGACGATCGG 270
consensus_6486#2 --------------------------------------------CCGCCCACGCGTCCG- 15
** ** ** **
consensus_6486#0 TGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAA 1140
consensus_6486#1 TGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAA 330
consensus_6486#2 ---CATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAA 72
*********************************************************
consensus_6486#0 CAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATAT 1200
consensus_6486#1 CAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCCCAGAAGGATAT 390
consensus_6486#2 CAAGCTGCTGCCGTTGCGCCGCGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATAT 132
********************* ************************** ***********
consensus_6486#0 CGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCA 1260
consensus_6486#1 CGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGGCAATGTTCTTCCTGAGCCA 450
consensus_6486#2 CGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCA 192
**************************************** * ***************
consensus_6486#0 TCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAA 1320
consensus_6486#1 TCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAA 510
consensus_6486#2 TCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAA 252
************************************************************
consensus_6486#0 TCAGCAGCTGA------------------------------------------------- 1331
consensus_6486#1 TCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAA 570
consensus_6486#2 TCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAA 312
***********
consensus_6486#0 ------------------------------------------------------------
consensus_6486#1 GCAGATGCTAACGCTGGAGAAGCATGTGCATCAGTACAAACATTTCC------------- 617
consensus_6486#2 GCAGATGCTAACGCTGGAGAAGGATGTGGATCAGTACAAACATTTCCGCCCGGACGATCC 372
consensus_6486#0 ------------------------------------------------------------
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 AAGCATCAAGACGAAGGCTATGCTGCAAATGATCCAGCAACTGCAGTCGGATTTCGAGCG 432
consensus_6486#0 ------------------------------------------------------------
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 CACAATTGAAGGTTCCGGTTCGGCGCTAGTCAACACGAACGAACTTTCTGGCGGTGCCAA 492
consensus_6486#0 ------------------------------------------------------------
consensus_6486#1 ------------------------------------------------------------
consensus_6486#2 GATCAATAGAATATTCCACGAGCGATTGCGTTTCGAGATCGTCAAGATGTCGTGCGACGA 552
consensus_6486#0 -------------------
consensus_6486#1 -------------------
consensus_6486#2 GAAGGAGCTGCGGCGTGAA 571
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||