These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence [AGATCCCCGAGGTTAATTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATGGAGATGGGATCGGTTGTTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGAGACATAACGAACACGGGCACTCAGGTGGAAGGGTAGGGTGAAACACTCATCTAATGCTGGCACAATGTTTACTCACACTTTCATTGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCATAACAACTACTTTAAACAAAAACATTGGCATTGGTTTGCNAATCNANACCAAACGTATTTTACACCACTTTACATGNTCCCAATTCNCTTTTANTTCACGGAACCAAATTTAATTTACCCAAAAAAAAACCCCNTTTTCCNCCTTTACAAACCTATTTTCGCGACCNTNAAGTGATTATACCAGACCNCGTGGAGNAGGGTCNCGGATTCTCATAACAGCGACGAGACATGGTAGTACACACAAGGGTACTACAAAACGCGAAGCCCCAAAATATNATCACGNGGGGCCATAATATTAGTGAATATCCCAAAAAACNCTTAAATCTTTACCCGANGGGACAGAGAGAGAACCCCCNGCGTTTNGCCGCCCCGGAGTCATCAACCACACAANGGGTGATCACAAGTGGAACAATTACACGAGCGNCAAAACGGCGTGAGTCTCCCGANCTCNCTTGGGGACANCACAAACGCGCAGNGNGAATCCTTNAACTTTGGGAATTGGCCTATCCTTNAAACGTACACTTACAC] [+] EMBL AL695081 [AGATCCCCGAGGTTAATTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATGGAGATGGGATCGGTTGTTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGAGACATAACGAACACGGGCACTCAGGTGGAAGGGTAGGGTGAAACACTCATCTAATGCTGGCACAATGTTTACTCACACTTTCATTGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCATAACAACTACTTTAAACAAAAACATTGGCATTGGTTTGCNAATCNANACCAAACGTATTTTACACCACTTTACATGNTCCCAATTCNCTTTTANTTCACGGAACCAAATTTAATTTACCCAAAAAAAAACCCCNTTTTCCNCCTTTACAAACCTATTTTCGCGACCNTNAAGTGATTATACCAGACCNCGTGGAGNAGGGTCNCGGATTCTCATAACAGCGACGAGACATGGTAGTACACACAAGGGTACTACAAAACGCGAAGCCCCAAAATATNATCACGNGGGGCCATAATATTAGTGAATATCCCAAAAAACNCTTAAATCTTTACCCGANGGGACAGAGAGAGAACCCCCNGCGTTTNGCCGCCCCGGAGTCATCAACCACACAANGGGTGATCACAAGTGGAACAATTACACGAGCGNCAAAACGGCGTGAGTCTCCCGANCTCNCTTGGGGACANCACAAACGCGCAGNGNGAATCCTTNAACTTTGGGAATTGGCCTATCCTTNAAACGTACACTTACAC] consensusID : consensus_6487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence [CCCAGCAGCTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATGGAGATGGGATCGGTTTTCTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGATACATAACGAACACAGGCACTCAGGTGGAAGGGTAGGGTGAAACACTCATCTAATGTTGCCACAATGTTTACTCACACTTTCATTGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCCATAACAACTACTATAAACAAAAACATTGGATTGGTTTGAAATCAAAACAAACTATTTTACACACTTTACATGCTCGAATTCATTTTATTTCACGAACAACTTTATTACAAACAAACCCTTTTTCACTTACAACATATCACGCACCTTAGGTATCAGTACTGTGAGGTTCGCTTCATAACGCAGCAGTGATCAACGATCAACCAGCCAAATACTTCTGGTTCTATATATGTATCCCAAACCTTACTTTCGTTTGCAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCTTGGTGGAAATGATATTTTGTGCAGAAAAATTATGAA] [+] EMBL BX626470 [CCCAGCAGCTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATGGAGATGGGATCGGTTTTCTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGATACATAACGAACACAGGCACTCAGGTGGAAGGGTAGGGTGAAACACTCATCTAATGTTGCCACAATGTTTACTCACACTTTCATTGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCCATAACAACTACTATAAACAAAAACATTGGATTGGTTTGAAATCAAAACAAACTATTTTACACACTTTACATGCTCGAATTCATTTTATTTCACGAACAACTTTATTACAAACAAACCCTTTTTCACTTACAACATATCACGCACCTTAGGTATCAGTACTGTGAGGTTCGCTTCATAACGCAGCAGTGATCAACGATCAACCAGCCAAATACTTCTGGTTCTATATATGTATCCCAAACCTTACTTTCGTTTGCAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCTTGGTGGAAATGATATTTTGTGCAGAAAAATTATGAA] consensusID : consensus_6487#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence [CCGACGATGTCAGCTCGGACAACATCGTGATCGTCGATGCGCAAACGCTGCTCGTACCCAACTTCAGCTACGATGGCGAAGCACCAGATGCCAAGTTTTGGGTGGGACGCGGGCCAGCACCGACATCGCAGGGTATTCGCATCCCAGACGAGAATGGCAAGGAGACACCGCTGCGTCGCTACGACAAGAAGACGATCGTTCTGACCCTGCCCGGTGATCTGACCGTGTTCGACATTGGTCACTTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCATGGTGGAAATGATATTTTGTGCAGAAAAATTATGAAAATTTTAAATTATCTCATTAATCTCGCATTGCAAAACAAAGCCAAATTTGTACTATTGTTCGAGAGCTACGAAATTGAAGAACATTTGAGAAGAGTCCCGTGACATCCTTTTAGGTTGTAAATAAAAATTCCACTACAAAAATGT] [+] EMBL BM635516 [CCGACGATGTCAGCTCGGACAACATCGTGATCGTCGATGCGCAAACGCTGCTCGTACCCAACTTCAGCTACGATGGCGAAGCACCAGATGCCAAGTTTTGGGTGGGACGCGGGCCAGCACCGACATCGCAGGGTATTCGCATCCCAGACGAGAATGGCAAGGAGACACCGCTGCGTCGCTACGACAAGAAGACGATCGTTCTGACCCTGCCCGGTGATCTGACCGTGTTCGACATTGGTCACTTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCATGGTGGAAATGATATTTTGTGCAGAAAAATTATGAAAATTTTAAATTATCTCATTAATCTCGCATTGCAAAACAAAGC ] [+] EMBL BM593572 [ ccgCTTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTCGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCTTGGTGGAAATGATATTTTGTGCAGAAAAATTATGAAAATTTTAAATTATCTCATTAATCTCGCATTGCAAAAAAAAAACAAATTTGTACTATTGTTCGAGAGCTACGAAATTGAAGAACATTTGAGAAGAGTCCCGTGACATCCTTTTAGGTTGTAAATAAAAATTCCACTACAAAAATGT] consensusID : consensus_6487#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [TGCTCGAGCAGATCGCCAGAGGNNTNATTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAATGGAGATGGGATCGGTTGTTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGAGACATAACGAACACGGGCACTCAGGTGGAAGGGTANNGGTGAAACACTCATCTAATGCTGCCACAATGTTTACTCACACTTTCATTCGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCCATAACAAACTACTTTACAAGCAACAACACCATTGGGANTTGGCTTTGACATTCAAAAACCAAAAGCTATTTATACCACNACTTTACACATTGCTCGAAATTCATTCTNCAACTTTCAACGAAACCAACCTTTTTATTACAAAACAAAACCACTTTAATCACCATTAACAA] [+] EMBL AL696578 [TGCTCGAGCAGATCGCCAGAGGNNTNATTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAATGGAGATGGGATCGGTTGTTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGAGACATAACGAACACGGGCACTCAGGTGGAAGGGTANNGGTGAAACACTCATCTAATGCTGCCACAATGTTTACTCACACTTTCATTCGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCCATAACAAACTACTTTACAAGCAACAACACCATTGGGANTTGGCTTTGACATTCAAAAACCAAAAGCTATTTATACCACNACTTTACACATTGCTCGAAATTCATTCTNCAACTTTCAACGAAACCAACCTTTTTATTACAAAACAAAACCACTTTAATCACCATTAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6487#0 ---------AGATCCCCGA--GGTTAATTTGGTGTGTGGTGCGAGGCATTCACTGTCGAC 49 consensus_6487#3 TGCTCGAGCAGATCGCCAGAGGNNTNATTTGGTGTGTGGTGCGAGGCATTCACTGTCGAC 60 consensus_6487#1 ------------------------------------------------------------ consensus_6487#2 ------------------------------------------------------------ consensus_6487#0 TTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGC 109 consensus_6487#3 TTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGC 120 consensus_6487#1 ------------------------------------------------------------ consensus_6487#2 --------------CCGACGATGTCAGCTCGG-ACAACATCGTGATCGTCGATGCGCAAA 45 consensus_6487#0 ATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGC 169 consensus_6487#3 ATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGC 180 consensus_6487#1 -----------------------------------------------CCCAGCAGCTAGC 13 consensus_6487#2 CGCTGCTCGTACCCAACTTCAGCTA--CGATGGCGAAGCACCAGATGCCAAGTTTTGGGT 103 ** ** * consensus_6487#0 GGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATG 229 consensus_6487#3 GGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTA-ATG 239 consensus_6487#1 GGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATG 73 consensus_6487#2 GGGACGCGGGCCAGCACCGACA--TCGCAGG-----GTATTCGCATCCCAGACGAGAATG 156 ** * * **** * * ** ** ** * ** * * *** consensus_6487#0 GAGATGGGAT-CGGTTGT-TTGTTCAGTCTTCATCACTGTC----CAACGATGCTTAGGA 283 consensus_6487#3 GAGATGGGAT-CGGTTGT-TTGTTCAGTCTTCATCACTGTC----CAACGATGCTTAGGA 293 consensus_6487#1 GAGATGGGAT-CGGTTTTCTTGTTCAGTCTTCATCACTGTC----CAACGATGCTTAGGA 128 consensus_6487#2 GCAAGGAGACACCGCTGCGTCGCTACGACAAGAAGACGATCGTTCTGACCCTGCCCGGTG 216 * * * ** * * * * * * * * * ** ** ** *** * consensus_6487#0 TGGGAGACATAACGAACACGGG-CACTCAGGTGGAAGGGTAGGG-TGAAACACTCATCTA 341 consensus_6487#3 TGGGAGACATAACGAACACGGG-CACTCAGGTGGAAGGGTANNGGTGAAACACTCATCTA 352 consensus_6487#1 TGGGATACATAACGAACACAGG-CACTCAGGTGGAAGGGTAGGG-TGAAACACTCATCTA 186 consensus_6487#2 ATCTGACCGTGTTCGACATTGGTCACTTTGGTGTGTGGTGCGAG--GCATTCACTGTCGA 274 * * *** ** **** **** ** * * * ** * consensus_6487#0 ATGCTGGCACAATGTTTACTCACACTTTCATT-GTCTGTGTTACTTACCACACATCCGTG 400 consensus_6487#3 ATGCTGCCACAATGTTTACTCACACTTTCATTCGTCTGTGTTACTTACCACACATCCGTG 412 consensus_6487#1 ATGTTGCCACAATGTTTACTCACACTTTCATT-GTCTGTGTTACTTACCACACATCCGTG 245 consensus_6487#2 CTTTGGGCACG-TGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTG 333 * * *** ** * * ** * ** * * * ** * ** consensus_6487#0 -TATCATATCAGGCACC-ATAACAA-CTACTTTA-----AACAAAAACATTGGCATTGG- 451 consensus_6487#3 -TATCATATCAGGCACCCATAACAAACTACTTTACAAGCAACAACACCATTGGGANTTGG 471 consensus_6487#1 -TATCATATCAGGCACCCATAACAA-CTACTATA-----AACAAAAACATTGG-ATTGG- 296 consensus_6487#2 GCATCAGCCCA--CAGCGATCGCGT-TCGCCGTAA----AAAAGGGTCAGTGAGATCAGC 386 **** ** ** * ** * * ** ** * ** ** * * consensus_6487#0 -TTTGCNAATCNANA-CCAAACGTATTTTA---CACCACTTTACA---TGNTCCCAATTC 503 consensus_6487#3 CTTTGACATTCAAAAACCAAAAGCTATTTATACCACNACTTTACACATTGCTCGAAATTC 531 consensus_6487#1 -TTTG-AAATCAAAA--CAAAC-TATTTTA---CAC-ACTTTACA---TGCTCG-AATTC 343 consensus_6487#2 GATCGCTGCTCGAGCTCTGGAA-CAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTAC 445 * * ** * * * * * * * * consensus_6487#0 NCTTTTAN---TTCACGGAACCAAATTTAATTTACCCAAAAAAAAACCCCNTTTTCCNCC 560 consensus_6487#3 ATTCTNCAACTTTCAACGAAACCAACCTTTTTATTACAAAACAAAACCACTTTAATCACC 591 consensus_6487#1 ATTTTAT----TTCACGAA---CAACTTTATT-----ACAAACAAACCCTTTT--TCACT 389 consensus_6487#2 ATAACTAT---TTAATGTAGACACGTTTTGCTTA---AGGACGCAAAACGCAGAAATGGT 499 ** * * * * * * ** consensus_6487#0 TTTACAAACCTATTTTCGCGACCNTNAAGTGATTATACCAGACCNCGTGGAGNAGGGTCN 620 consensus_6487#3 ATTAACAA---------------------------------------------------- 599 consensus_6487#1 TACAACATATCACGCACCTTAGGTATCAGTACTGTGA--GGTTCGCTTCATAACGCAGCA 447 consensus_6487#2 ATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCATGGTGGAAATGATAT 559 * consensus_6487#0 CGGATTCTCATAACAGCGACGAGACATGGTAGTACACACAAGG---GTACTACAAAACGC 677 consensus_6487#3 ------------------------------------------------------------ consensus_6487#1 GTGATCAACGATCAACCAGCCAAATACTTCTGGTTCTATATAT---GTATCCCAAACCTT 504 consensus_6487#2 TTTGTGCAGAAAAATTATGAAAATTTTAAATTATCTCATTAATCTCGCATTGCAAAACAA 619 consensus_6487#0 GAAGCCCCAAAATATNATCACGNGGGGCCATAATATTAGTGAATATCCCAAAAAACNCTT 737 consensus_6487#3 ------------------------------------------------------------ consensus_6487#1 ACTTTCGTTTGCAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTG----AGATCAGCGAT 560 consensus_6487#2 AGCCAAATTTGTACTATTGTTCGAGAGCTACGAAATTGAAGAACATTTGAGAAGAGTCCC 679 consensus_6487#0 AAATCTTTACCCGANGGGACAGAGAGAGAACCCCCNGCGTTTNGCCGCCCCGGAGTCATC 797 consensus_6487#3 ------------------------------------------------------------ consensus_6487#1 CGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAAT--GCCTATCTTTAAGTACAT 618 consensus_6487#2 GTGACATCCTTTTAGGTTGTAAATAAAAATTCCACTACAAAAATGT-------------- 725 consensus_6487#0 AACCACACAANGGGTGATCACAAGTGGAACAATTACACGAGCGNCAAAACGGCGTGAGTC 857 consensus_6487#3 ------------------------------------------------------------ consensus_6487#1 AACTATTTAATG--TAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATG-----GTA 671 consensus_6487#2 ------------------------------------------------------------ consensus_6487#0 TCCCGANCTCNCTTGGGGACANCACAAACGCGCAGNGNGAATCCTTNAACTTTGGGAATT 917 consensus_6487#3 ------------------------------------------------------------ consensus_6487#1 TTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCTTGG-----TGGAAATG 726 consensus_6487#2 ------------------------------------------------------------ consensus_6487#0 GGCCTATCCTTNAAACGTACACTTACAC 945 consensus_6487#3 ---------------------------- consensus_6487#1 ATATTTTGTGCAGAAAAATTATGAA--- 751 consensus_6487#2 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||