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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1503 fasta sequence
[CCGCCCACGCGTCCGCGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATGGGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACGATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCCGGCTTCCACCAGGGATTCAAGCGTGAGCCATCGCCCGGTGCTACGCGAACGTCGCCCTTCCCGGACATGTGGTCCGAGCAGCCGAACCATGTGCCTCGCGGAACGTCAATTCCTAGACAAACGCCTTCACCATCGACCGCGCAGCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCACCAGCCACAGCAACCAAAACCAAACACGCAGCAGCAAGTACCGCGGCAACAGCAGCCACCGGCGGCGCAACAGCAGCATGCGGATGCGCAGCAGCACCCGGCCGCCGCTGCTGGACAGGATCAACCGGACAGCCGCCCAAAGATGTCCGCCAAGGAGGATCCGCTTACGAAAATACAGAAGATACAGAAAGACGTGCTCGCCATCTTCGACCAGGTGGAACAGTTCAAGGGCGGCAAGGAGGGGAAGAAGGACAAGGCGTACATCTATCTGGACGAGATGCTGACGCAGAACCTGCTGAAGCTGGACTCGATCGATGCCGAGGATCAGCCGCAGATTAAGTCCGCCCGGAAGGAGGCCATCAAGAGCATAAACACCTGCATCGCGGTGCTGGAGGCGAAGGCGGAAGCCGGTGCTAGCGGGAGCGCCAACGCCAGTTCCGGCTCGATCGGGAAGGCGAACAGTAGCAGCAACGGTTTGAGCGCGAACGGTATGGAGCAGTCCGGCTCGAACACGTCAATTCCTCACTCGTCGTCCAACTCTAGTCAACAACAACAGCAGCAGCGGGGCAATGAGGTATCGAGCCAGTAGTGTGTGTGTTAGCGCGCGCGTGTGTGTGTGTCTGTGAACATGCAGAAAACGGTTGCCATGGCGCCTCGGTCGACGACCATCCTGTTTTGCCGAGCATGAGAGCATCCGTGTCGATGACGACGCTTGGTTTGTCCTGTTCGCCAGCCTACTTTGTGTCATATTTATAGCCCGTTGGTGGTTTCTTCCTGGCACCAACCGCTCTGCATGAAGAACCGTCATTTCATTCGACCGTCCGGATCTTCAACGATCATATGTTTCATTTGTTCATCGTTACTCTCTCCTTCCTTTTTCATCGCTAGTTTCATAACCAAGTTTCAGTGAGGCTTCAACAGAGTGCTTCAGGTTGATAGGTTCTGCATGAATTTGTAATTTGCCTAAATTAAGATTGAT]
[+] EMBL BM637299 [CCGCCCACGCGTCCGCGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATGGGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACGATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCCGGCTTCCACCAGGGATTCAAGCGTGAGCCATCGCCCGGTGCTACGCGAACGTCGCCCTTCCCGGACATGTGGTCCGAGCAGCCGAACCATGTGCCTCGCGGAACGTCAATTCCTAGACAAACGCCTTCACCATCGACCGCGCAGCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCACCAGCCACAGCAACCAAAACCAAACACGCAGCAGCAAGTACCGCGGCAACAGCAGCCACCGGCGGCGCAACAGCAGCATGCGGATGCGCAGCAGCACCCGGCCGCCGCTGCTGGACAGGATCAACCGGACAGCCGCCCAAAGATGTCCGCCAAGGAGGAT ]
[+] EMBL AGA280648 [ GGATCAACCGGACAGTCGCCCAAAGATGTCCGCCAAGGAGGATCCGCTTACGAAAATACAGAAGATACAGAAAGACGTGCTCGCCATCTTCGACCAGGTGGAACAGTTCAAGGGCGGCAAGGAGGGGAAGAAGGACAAGGCGTACATCTATCTGGACGAGATGCTGACGCAGAACCTGCTGAAGCTGGACTCGATCGATGCCGAGGATCAGCCGCAGATTAAGTCCGCCCGGAAGGAGGCCATCAAGAGCATAAACACCTGCATCGCGGTGCTGGAGGCGAAGGCGGAAGCCGGTGCTAGCGGGAGCGCCAACGCCAGTTCCGGCTCGATCGGGAAGGCGAACAGTAGCAGCAACGGTTTGAGCGCGAACGGTATGGAGCAGTCCGGCTCGAACACGTCAATTCCTCACTCGTCGTCCAACTCTAGTCAACAACAACAGCAGCAGCGGGGCAATGA ]
[+] EMBL BM589700 [ CCGGGAAGGAGGCCATCAAGAGCATAAACACCTGCATCGCGGTGCTGGAGGCGAAGGCGGAAGCCGGTGCTAGCGGGAGCGCCAACGCCAGTTCCGGCTCGATCGGGAAGGCGAACAGTAGCAGCAACGGTTTGAGCGCGAACGGTATGGAGCAGTCCGGCTCGAACACGTCAATTCCTCACTCGTCGTCCAACTCTAGTCAACAACAGCAGCAGCAGCAGGCCAATGAGGTATCGAGCCAGTAGTGTGTGTGTTAGCGCGCGCGTGTGTGTGTGTCTGTGAACATGCAGAAAACGGTTGCCATGGCGCCTCGGTCGACGACCATCCTGTTTTGCCGAGCATGAGAGCATCCGTGTCGATGACGACGCTTGGTTTGTCCTGTTCGCCAGCCTACTTTGTGTCATATTTATAGCCCGTTGGTGGTTTCTTCCTGGCACCAACCGCTCTGCATGAAGAACCGTCATTTCATTCGACCGTCCGGATCTTCAACGATCATATGTTTCATTTGTTCATCGTTACTCTCTCCTTCCTTTTTCATCGCTAGTTTCATAACCAAGTTTCAGTGAGGCTTCAACAGAGTGCTTCAGGTTGATAGGTTCTGCATGAATTTGTAATTTGCCTAAATTAAGATTGAT]
consensusID : consensus_6489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTGCAGCTGTGGAGAAAAACTGGAACGAAAAAATTGATTTTCGCGTTATTCAACCACTCTGGTGCGTGCTATCTGTGGGCAAAGTGCAGCGGGACAGTGAAAACCAGCGCTCGGAAGATAGGTCGTGCGAGCCCCAGCGCCCGTACTGCTGAAACGTGGAGTGTGGAAAATTCGCCAAGGTTCTAGAACAAACCGCATTGGCGTTTCGTCGCCTGGTCGCGCGGGGTTGCGGAAGAAAAGAAGGAGTGCGAGAGTGTGTGTGTGTGTGACAAATAAATAGCAAAGCAACCAGACAGGCCTGGTACACTGTAGGGATCGTACGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATGGGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACGATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCGGGCTTCCACCAGGGCTTCAAG]
[+] EMBL BM614000 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCAGCTGTGGAGAAAAACTGGAACGAAAAAATTGATTTTCGCGTTATTCAACCACTCTGGTGCGTGCTATCTGTGGGCAAAGTGCAGCGGGACAGTGAAAACCAGCGCTCGGAAGATAGGTCGTGCGAGCCCCAGCGCCCGTACTGCTGAAACGTGGAGTGTGGAAAATTCGCCAAGGTTCTAGAACAAACCGCATTGGCGTTTCGTCGCCTGGTCGCGCGGGGTTGCGGAAGAAAAGAAGGAGTGCGAGAGTGTGTGTGTGTGTGACAAATAAATAGCAAAGCAACCAGACAGGCCTGGTACACTGTAGGGATCGTACGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACA ]
[+] EMBL BM614015 [ CCGCCCACGCGTCC GCAGCTGTGGAGAAAAACTGGAACGAAAAAATTGATTTTCGCGTTATTCAACCACTCTGGTGCGTGCTATCTGTGGGCAAAGTGCAGCGGGACAGTGAAAACCAGCGCTCGGAAGATAGGTCGTGCGAGCCCCAGCGCCCGTACTGCTGAAACGTGGAGTGTGGAAAATTCGCCAAGGTTCTAGAACAAACCGCATTGGCGTTTCGTCGCCTGGTCGCGCGGGGTTGCGGAAGAAAAGAAGGAGTGCGAGAGTGTGTGTGTGTGTGACAAATAAATAGCAAAGCAACCAGACAGGCCTGGTACACTGTAGGGATCGTACGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCGTCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATGGGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACGATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCGGGCTTCCACCAGGGCTTCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6489#0 CCGCCCACGCGTCCGCGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGA 60
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 CATAGAATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATT 120
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 CCGATTTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAAAACGCCCGAATCGCAACCG 180
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 TCACAGCCGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATG 240
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 GGCGAGGGCGGCCCCAGCATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCACG 300
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 ATCTTCGACTCGGTGCGCGACATGCCAGTGCGATCGAACTTTCCCGGCTTCCACCAGGGA 360
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 TTCAAGCGTGAGCCATCGCCCGGTGCTACGCGAACGTCGCCCTTCCCGGACATGTGGTCC 420
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 GAGCAGCCGAACCATGTGCCTCGCGGAACGTCAATTCCTAGACAAACGCCTTCACCATCG 480
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 ACCGCGCA-GCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCACCAGCCACAGCAACC 539
consensus_6489#1 -CCGCCCACGCGTCCGCCCACGCGTCCGGTGCAGCTGTGGAGAAA--AACTGGAACGAAA 57
**** ** ** ***** *** *** ***** * * * * * * * *
consensus_6489#0 AAAACCAAACACGCAGCAGCAAGTACCGCGGCAACAGCAGCCACCGGCGGCGCAACAGCA 599
consensus_6489#1 AAATTGATTTTCGCGTTATTCA--ACCACTCTGGTGCGTGCTATCTGTGGGCAAAGTGCA 115
*** * *** * * *** * ** * * * ** ** ***
consensus_6489#0 GCATGCGGATGCGCAGCAGCACCCGGCCGCCGCTGCTGGACAGGATCAACCGGACAGCCG 659
consensus_6489#1 GCGGGACAGTGAAAACCAGCGCTCGGAAGATAG-GTCGTGCGAGCCCCAGCGCCCGTACT 174
** * ** * **** * *** * * * * * * * ** * *
consensus_6489#0 CCCAAAGATGTCCGCCAAGGAGGATCCGCTTACGAAAATACAGAAGATACAGAAA-GACG 718
consensus_6489#1 GCTGAA-ACGTGGAGTGTGGAAAATTCGC---CAAGGTTCTAGAACAAACCGCATTGGCG 230
* ** * ** *** ** *** * * * **** * ** * * * **
consensus_6489#0 TGCTCGCCATCTTCGACCAGGTGGAACAGTTCAAGGGCGGCAAGGAGGGGAAGAAGGACA 778
consensus_6489#1 T-TTCGTCGCCT--GGTCGCGCGGG---GTT-----GCGG-AAGAAAAGAAGGAGTGCGA 278
* *** * ** * * * ** *** **** *** * * * ** * *
consensus_6489#0 AGGCGTACATCTATCTGGACGAGATGCTGACGCAG-AACCTGCTGAAGCTGG-ACTCGAT 836
consensus_6489#1 GAGTGTGTGTGTGTGTG-ACAAATAAATAGCAAAGCAACCAGACAGGCCTGGTACACTGT 337
* ** * * * ** ** * * * ** **** * **** ** * *
consensus_6489#0 CGATGCCGAGGATCAGCCGCAG-ATTAAGTCCGCCCGGAAGGAGGCCATCAAGAGCATA- 894
consensus_6489#1 AGGGATCGTACGTACTTCGAGACAGCTAATACGCCGCGTAAGTAAAAAAAACGGACATAG 397
* ** * ** * * * **** * * * * * * ****
consensus_6489#0 AACACCTGCATCGCGGTGCTGGAGGCGAAGGCGGAAGCCGGTGCTAGCGGGAGCGCCAAC 954
consensus_6489#1 AATGTCGTCACAGCAAGAGCAACCACAACAGCAGCAACCGACCGTGCGGCACATTCCGAT 457
** * ** ** * * ** * * *** * * ** *
consensus_6489#0 GCCAGTTCCGGCTCGATCGGGAAGGC-GAACAGTAGCAGCAACGGTTTGAGCGCGAACGG 1013
consensus_6489#1 TTTCGTCGAAGGTCGATCGGAGCCGCTGATCAATAA----AACGCCCGAATCGCAACCGT 513
** * ******** ** ** ** ** **** * *** * **
consensus_6489#0 TATGGAGCAGTCCGGCTCGAACA-CGTCAATTCCTCACTCGTCGTCCAACTCTAGTCAAC 1072
consensus_6489#1 CACAGC-CGTCCCAGCAGCAGCAGCCGCAGCCGCAGCACCATCATCCGACGACTGGCATG 572
* * * ** ** * ** * ** * * ** *** ** * **
consensus_6489#0 AACAACAGCAGCAGCGGGGCAATGAGGTATCGAGCCAGTAGTGTGTGTGTTAGCGCGCGC 1132
consensus_6489#1 GGCGAGGGCGGCCCCAG--CATGGACATGCCCAGCCGGAACGATTTCTTCAAACACGGCA 630
* * ** ** * * ** ** * * **** * * * * * * * **
consensus_6489#0 GTGTGTGTGTGTCTGTGAACATGCAGAAAACGGTTGCCATGGCGCCTCGGTCGACGACCA 1192
consensus_6489#1 CGATCTTCGACTCGGTG----CGCGACATGCCAGTGCGATCGAACTTTC-CGGGCTTCCA 685
* * * ** *** ** * * *** ** * * * * * ***
consensus_6489#0 TCCTGTTTTGCCGAGCATGAGAGCATCCGTGTCGATGACGACGCTTGGTTTGTCCTGTTC 1252
consensus_6489#1 CCAGGGCTT--CAAG--------------------------------------------- 698
* * ** * **
consensus_6489#0 GCCAGCCTACTTTGTGTCATATTTATAGCCCGTTGGTGGTTTCTTCCTGGCACCAACCGC 1312
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 TCTGCATGAAGAACCGTCATTTCATTCGACCGTCCGGATCTTCAACGATCATATGTTTCA 1372
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 TTTGTTCATCGTTACTCTCTCCTTCCTTTTTCATCGCTAGTTTCATAACCAAGTTTCAGT 1432
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 GAGGCTTCAACAGAGTGCTTCAGGTTGATAGGTTCTGCATGAATTTGTAATTTGCCTAAA 1492
consensus_6489#1 ------------------------------------------------------------
consensus_6489#0 TTAAGATTGAT 1503
consensus_6489#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||