These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 787 fasta sequence [AACTCCTGGAAAANCCCAGTATAATCATCATCACCGCGTAAAAAAACCGCGCCAAACCTTATTTCATTCCCCGTTTTGAGTTTAAAATATNGTTAATATTTAAATCAAATTATTATTTTACAATGACAATTTTTTTGCACAGCTTAGCTAAAAACATAACAAAAAAGTATGTACGTTCTTGGAACACGTACTTGCCTTTNNTTCTTTCTTTTTTTTTTTGTAAAAAAACACTATAATGTATATAAAACAGACAATTAAGAACAGAGTGTTGTGTGTGTACATGTACCCTAAAAAAGCACATCATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAA-G-TCTAAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTTTCGACATTTCTCTCTTTTGCTGTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCTTTCTTCCATTTTACCTCTCCACAGCCACGCCGTTGTTACTGAATCATCGCGCCCTTGTGAAGCAACCATGTATACAGAACAAAACCCTGAGAGTGGTGTCTGTCG] [-] EMBL BX619378 [AACTCCTGGAAAANCCCAGTATAATCATCATCACCGCGTAAAAAAACCGCGCCAAACCTTATTTCATTCCCCGTTTTGAGTTTAAAATATNGTTAATATTTAAATCAAATTATTATTTTACAATGACAATTTTTTTGCACAGCTTAGCTAAAAACATAACAAAAAAGTATGTACGTTCTTGGAACACGTACTTGCCTTTNNTTCTTTCTTTTTTTTTTTGTAAAAAAACACTATAATGTATATAAAACAGACAATTAAGAACAGAGTGTTGTGTGTGTACATGTACCCTAAAAAAGCACATTATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAANGTTNTAGAACAGTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTcgccnn ] [+] EMBL BX627880 [ CTATAATGTATATAAAACAGACAATTAAGAACAGAGTGTTGTGTGTGTACATGTACCCTAAAAAAGCACATCATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAA G TCTAAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTTTCGACATTTCTCTCTTTTGCTGTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCTTTCTTCCATTTTACCTCTCCACAGCCACGCCGTTGTTACTGAATCATCGCGCCCTTGTGAAGCAACCATGTATACAGAACAAAACCCTGAGAGTGGTGTCTGTCG] [+] EMBL AGA285763 [ ATCATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAA G TCTAAAACGTTTTAAAATAGCACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTTTCGACATTTCTCTCTTTTGCTGTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCTTTCTTCCATTTTACCTCTCCACAGCCACACCGTTGTTA ] consensusID : consensus_6501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GCACATTATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAAGTCTAAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGACATTTCTCTCTTTTTCTCTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCCGG] [-] EMBL BM623152 [GCACATTATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAAGTCTAAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGACATTTCTCTCTTTTTCTCTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCCGG] consensusID : consensus_6501#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [CCTGCCTCCCACACTCACCGCCTCCGCGCTCCCGACAGACACCACTCACAGGGGTAGGTCCCGTATACATGGTGGCCTCACAAGGGCGCGATGATACAGTAACAACGGCGCGGCCGTGGAGAGGTAAAATGGAAGA] [+] EMBL BX618173 [CCTGCCTCCCACACTCACCGCCTCCGCGCTCCCGACAGACACCACTCACAGGGGTAGGTCCCGTATACATGGTGGCCTCACAAGGGCGCGATGATACAGTAACAACGGCGCGGCCGTGGAGAGGTAAAATGGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6501#0 AACTCCTGGAAAANCCCAGTATAATCATCATCACCGCGTAAAAAAACCGCGCCAAACCTT 60 consensus_6501#1 ------------------------------------------------------------ consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 ATTTCATTCCCCGTTTTGAGTTTAAAATATNGTTAATATTTAAATCAAATTATTATTTTA 120 consensus_6501#1 ------------------------------------------------------------ consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 CAATGACAATTTTTTTGCACAGCTTAGCTAAAAACATAACAAAAAAGTATGTACGTTCTT 180 consensus_6501#1 ------------------------------------------------------------ consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 GGAACACGTACTTGCCTTTNNTTCTTTCTTTTTTTTTTTGTAAAAAAACACTATAATGTA 240 consensus_6501#1 ------------------------------------------------------------ consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 TATAAAACAGACAATTAAGAACAGAGTGTTGTGTGTGTACATGTACCCTAAAAAAGCACA 300 consensus_6501#1 -------------------------------------------------------GCACA 5 consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 TCATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAAGTCT 360 consensus_6501#1 TTATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAAGTCT 65 consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 AAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTA---ATGTAG 417 consensus_6501#1 AAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTA---ATGTAG 122 consensus_6501#2 ------------------CCTGCCTCCCACACTCACCGCCTCCGCGCTCCCGACAGACAC 42 ** * ** ** * ** * * * * * consensus_6501#0 TGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCA 477 consensus_6501#1 TGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCA 182 consensus_6501#2 CACTCACAGGGGTAGGTCCCGTATACATGGTGGCCTCACAAGGGCGCGATGATACAGTAA 102 * * * * * * ***** ** * ** * * * ** * * consensus_6501#0 ATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAAC 537 consensus_6501#1 ATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAAC 242 consensus_6501#2 CAACGGCGCGGCCGTGGAGAGGTAA-AATGGAAGA------------------------- 136 * ** ** * ** *** * * consensus_6501#0 TCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCT 597 consensus_6501#1 TCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCT 302 consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 TTCGACATTTCTCTCTTTTGCTGTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTG 657 consensus_6501#1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT------CTCTCTCTTTCG 356 consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 AGTATACGAACCAGTCGTAAGATCTTTCTTCCATTTTACCTCTCCACAGCCACGCCGTTG 717 consensus_6501#1 A----------CATTTCTCTCTTTTTCTCTCGATTCCATTCTCACACAGCTGTGCTAAAT 406 consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 TTACTGAATCATCGCGCCCTTGTGAAGCAACCATGTATACAGAACAAAACCCTGAGAGTG 777 consensus_6501#1 GCTTTGAGTATACGAACCAGT-CGTAAGATCCGG-------------------------- 439 consensus_6501#2 ------------------------------------------------------------ consensus_6501#0 GTGTCTGTCG 787 consensus_6501#1 ---------- consensus_6501#2 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||