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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1010 fasta sequence
[GGGCAAGGCTCATGCCGGGGCGTGGAACTTCGACCGGGCCCGGGCCGACTTCGAGCGGGCGGCCGAGCTGGACTCGGGCCTGCAAACCGCCGTCGGCAAAGAGCTGGCCAAGCTGCAGGAGCAGCAGCGGCTGCGGGACGTCGAGGACCGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTTTTTTGTTTTTTTTTAGGGAAAGGAGAGAGGTTTTTCTTTTGGGGATTTTTGTGTTTGTTTCCAGGTACTGGATGCGATTTAAGGTTTAGAGTGCATTCCTTGCAGGGAGGGTCAACCTCGATAGGTCGGAGGCATTACGTGCAAAAGCCCCTCAAGTGTTTTGTTTGTTACTTCAGTTTTTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGTTTAGGAACTGTGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTACGTAGAGCTTTTTAAATGTGTCTGTGTAATTGTTTGATTTGTTTAGATTAAATCTTCGCTTCCTCTTGCTTATGAAAAGCGTACGGGCATACTTGGAGTGGAAAATGAAGTCACAAACAAAAAAACATTTATTTCCCACAAAAAAGTCAAACATGTTCAAACACAGTTTTGGGTGTTGCACAGTTCCGGTTGAGGTGTCACGCGGTCGTCTTTAGGTTAAGGCACCGTAGACTTAAGCGTCAATATCATATTTAGTAGCTGTATGCACACAGTATGCTTATTACTCACACCACTCAGTGTCTTTCTCAGCTCGGTGTTGGTAGTTTCCAAAGGGTACTTTTTTGTCTACTCGCTCGATGTACATTTCCAAGAAGAATATCCTTTTCCTCCCAAATTGTTAGATAGGTAATTGTGCCATTAGCAAAACAAAAACTCAGTAAACTGCTAGGATGTATGGAGAGTATGAGAGTAATCAATCGGCAACCAAAATCAGAGTTTCACGCCGCAAAAAAAAACACGAGTCAAAATANGTAATCTA]
[+] EMBL BX611245 [GGGCAAGGCTCATGCCGGGGCGTGGAACTTCGACCGGGCCCGGGCCGACTTCGAGCGGGCGGCCGAGCTGGACTCGGGCCTGCAAACCGCCGTCGGCAAAGAGCTGGCCAAGCTGCAGGAGCAGCAGCGGCTGCGGGACGTCGAGGACCGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTTTTTTGTTTTTTTTTAGGGAAAGGAGAGAGGTTTTTCTTTTGGGGATTTTTGTGTTTGTTTCCAGGTACTGGATGCGATTTAAGGTTTAGAGTGCATTCCTTGCAGGGAGGGTCAACCTCGATAGGTCGGAGGCATTACGTGCAAAAGCCCCTCAAGTGTTTTGTTTGTTACTTCAGTTTTTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGTTTAGGAACTGTGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTACGTAGAGCTTTTTAAATGTGTCTGTGTAATTGTTTGATTTGTTTAGATTAAATCTTCGCTTCCTCTTGCTTATGAAAAGCGTACGGGCA ]
[+] EMBL BM617091 [ ccgCGGAGGCATTACGTGCAAAAGCCCCTCAAGTGTTTTGTTTGTTACCTCAGTTTTTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGTTTAGGAACTGTGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTACGTAGAGCTTTTTAAATGTGTCTGTGTAAATGTTTGATTTGTTTAGATTAAATCTTCGCTTCCTCTTGCTTATGAAAAGCGTACGGACATACTTGGAGTGGAAAATGAAGTCACAAACAAAAAAACATTTATTTCCCACAAAAAAGTCAAACATGTTCAAACACAGTTTTGGGTGTTGCACAGTTCCGGTTGAGGTGTCACGCGGTCGTCTTTAGGTTAAGGCACCGTAGACTTAAGCGTCAATATCATATTTAGTAGCTGTATGCACACAGTATGCTTATTACTCACACCACTCAGTGTCTTTCTCAGCTCGGTGTTGGTAGTTTCCAAAGGGTACTTTTTTGTCTACTCGCTCGATGTACATTTCCAAGAAGAATATCCTTTTCCTCCCAAATTGTTAGATAGGTAATTGTGCCATTAGCAAAACAAAAACTCAGTA ]
[-] EMBL BX626430 [ TTTTTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGTTTAGGAACTGTGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTACGTAGAGCTTTTTAAATGTGTCTGTGTAATTGTTTGATTTGTTTAGATTAAATCTTCGCTTCCTCTTGCTTATGAAAAGCGTACGGGCATACTTGGAGTGGAAAATGAAGTCACAAACAAAAAAACATTTATTTCCCACAAAAAAGTCAAGCATGTTCAAACACAGTTTTGGGTGTTGCACGGTTCCGGTTGAGGTGTCACGCGGTCGTCTTTAGGTTAAGGCACCGTAGACTTAAGCGTCAATATCATATTTAGTAGCTGTATGCACACAGTATGCTTATTACTCACACCACTCAGTGTCTTTCTCAGCTCGGTGTTGGTAGTTTCCAAAGGGTACTTTTTTGTCTACTCGCTGGATGTACATTTCCAAGAAGAATTTCCTTTTCCTCCCAAATTGTTAGATAGGTAATTGTGCCATTAGCAAAACAAAAACTCAGTAAACTGCTAGGATGTATGGAGAGTATGAGAGTAATCAATCGGCAACCAAAATCAGAGTTTCACGCCGCAAAAAAAAACACGAGTCAAAATANGTAATCTA]
consensusID : consensus_6508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGACCTCCCATCCCACCGCCCATCAAAATATTTGTTGTGATGGATTCCACCTTGCAGGAGCCAAAAATTGTGAAAAACATTGTGCATGCGGGCACCAAGGTCGTCCCGTTTCGGGACGGTACGAAGGTAAAGTTTCACTATCAGACGCGAAAATGTGACGAGGCGCGGACGCTGATCGACGACAGCCGGGCGCACGGCCAGAAACCGATGGAGCTGGTGCTCGGCAAGAAGTTTAAGCTCGAGGTGTGGGAATCGATCGTGCAGCAGATGGCCCTGCACGAGGTGGCCCGGTTCCGGTGCGACCGGTCGCTCGTCCAGCAGTACCCGTTCGTGTCGAAGACGATCCGGGACGCGCAGAAGCCGCGCGAGGAGCGCAAGCACTGCTGCGGCATGACGGTGCAGAACGAGGGCATCGGCTACCGGGACCTGGACGAGCTGTTCACCCACCCGCAGGACCTGGAGTTCACGATCGAGATCCTGTCGATCGAGAGCCCGGACGAGTACGAGAAGGAATCGTGGCAGCTGAGCGACGACGAGAAGCGGGCACTGGTTGGTCGGCTGCGCGAGCAGGGCAATGCCGCGTACCGGGCGAACGATCTGACCGCGGCCCGGGACGCTTACTCGTACGCGACCGGCATCATCGAGCAGCTGATGCTCAAGGAAAAACCCGACGAACCGGAAT]
[+] EMBL BM608575 [CCGACCTCCCATCCCACCGCCCATCAAAATATTTGTTGTGATGGATTCCACCTTGCAGGAGCCAAAAATTGTGAAAAACATTGTGCATGCGGGCACCAAGGTCGTCCCGTTTCGGGACGGTACGAAGGTAAAGTTTCACTATCAGACGCGAAAATGTGACGAGGCGCGGACGCTGATCGACGACAGCCGGGCGCACGGCCAGAAACCGATGGAGCTGGTGCTCGGCAAGAAGTTTAAGCTCGAGGTGTGGGAATCGATCGTGCAGCAGATGGCCCTGCACGAGGTGGCCCGGTTCCGGTGCGACCGGTCGCTCGTCCAGCAGTACCCGTTCGTGTCGAAGACGATCCGGGACGCGCAGAAGCCGCGCGAGGAGCGCAAGCACTGCTGCGGCATGACGGTGCAGAACGAGGGCATCGGCTACCGGGACCTGGACGAGCTGTTCACCCACCCGCAGGACCTGGAGTTCACGATCGAGATCCTGTCGATCGAGAGCCCGGACGAGTACGAGAAGGAATCGTGGCAGCTGAGCGACGACGAGAAGCGGGCACTGGTTGGTCGGCTGCGCGAGCAGGGCAATGCCGCGTACCGGGCGAACGATCTGACCGCGGCCCGGGACGCTTACTCGTACGCGACCGGCATCATCGAGCAGCTGATGCTCAAGGAAAAACCCGACGAACCGGAAT]
consensusID : consensus_6508#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[AGAATNGCCCGAGGCTCTGAGCAGTGCAATGCCTGCTGTACTGGGCTGAACGATCTGACCTGCGGCCCGGGACGCTTACTCGTACGCGACCTGGCATCATCGAGCAGCTGATGCTCAAGGAAAAACCCGACNGAACCGGAATGGATCTGAGCTGGCCCAGATGAATGTGTGCCTGCTGCTGCTGAACTACTCNGCAGGTGCAATGCTGCTCGAGCTGGGACTACTACGCCGCTGATCTGAGCACTGCACCTGAGTGCTGCTCAAGTACTGATCCTGCACTGCGTGAAGTGCACTGTTCCTGGCTGNGGTGCAATGGCTCATGCCTGGGGCTGTGGAACTTCGACCTGGGCCCTGTGGCCTGACTTCGAGCTGGGCTGTGCCTGAGCTGGACTCGGGCCTGCAAACCTGCCGTCGGCAAAGAGCTGGCCAAGCTGCAGTGAGCAGCAGCTGGCTGCGGGACGTCGAGGACCTGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTTTTTGTTTATTTTATNAGGGAAAGGAGAGAGGTTTATTCTTTTGGGGATTTTTGGTGTAGTAATCCAG]
[+] EMBL AL931303 [AGAATNGCCCGAGGCTCTGAGCAGTGCAATGCCTGCTGTACTGGGCTGAACGATCTGACCTGCGGCCCGGGACGCTTACTCGTACGCGACCTGGCATCATCGAGCAGCTGATGCTCAAGGAAAAACCCGACNGAACCGGAATGGATCTGAGCTGGCCCAGATGAATGTGTGCCTGCTGCTGCTGAACTACTCNGCAGGTGCAATGCTGCTCGAGCTGGGACTACTACGCCGCTGATCTGAGCACTGCACCTGAGTGCTGCTCAAGTACTGATCCTGCACTGCGTGAAGTGCACTGTTCCTGGCTGNGGTGCAATGGCTCATGCCTGGGGCTGTGGAACTTCGACCTGGGCCCTGTGGCCTGACTTCGAGCTGGGCTGTGCCTGAGCTGGACTCGGGCCTGCAAACCTGCCGTCGGCAAAGAGCTGGCCAAGCTGCAGTGAGCAGCAGCTGGCTGCGGGACGTCGAGGACCTGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTTTTTGTTTATTTTATNAGGGAAAGGAGAGAGGTTTATTCTTTTGGGGATTTTTGGTGTAGTAATCCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6508#0 -----------------------------------------------------GGGCAAG 7
consensus_6508#2 ------------------------------------------------------AGAATN 6
consensus_6508#1 CCGACCTCCCATCCCACCGCCCATCAAAATATTTGTTGTGATGGATTCCACCTTGCAGGA 60
consensus_6508#0 GCTCATG---CCGGGGCGTGGAACTTCGACCG-GGCCCGGGCCGAC----TTCGAGCGGG 59
consensus_6508#2 GCCCGAGGCTCTGAGCAGTGCAATGCCTGCTG-TACTGGGCTGAACGA--TCTGACCTGC 63
consensus_6508#1 GCCAAAAATTGTGAAAAACATTGTGCATGCGGGCACCAAGGTCGTCCCGTTTCGGGACGG 120
** * * * * * * * * *
consensus_6508#0 CGGCCGAGCTGGACTCGGGCCTGCAAACCGCCGTCGG--CAAAGAGCTGGCCAAGCTGCA 117
consensus_6508#2 GGCCCGGGACGCTTACTCGTACGCGACCTGGCATCAT--CGAGCAGCTG---ATGCTCAA 118
consensus_6508#1 TACGAAGGTAAAGTTTCACTATCAGACGCGAAAATGTGACGAGGCGCGGACGCTGATCGA 180
* * * * * ** * * * *
consensus_6508#0 GGAGCAGCAGCGGCTGCGGGACGTCGAGGACCGGCTCAAGTATCAG--AAGCTTTTTTAG 175
consensus_6508#2 GGAAAAACC-CGACNG--AACCGGAATGGATCTGAGCTGGC-CCAG--ATGAATGTGTGC 172
consensus_6508#1 CGACAGCCG--GGCGCACGGCCAGAAACCGATGGAGCTGGTGCTCGGCAAGAAGTTTAAG 238
** * * * * * * * * * * *
consensus_6508#0 TTCTTTTTTTGTTTTTTTTTAGGGAAAGGAGAGAGGTTTTTCTTTTGGGGATTTTTGTGT 235
consensus_6508#2 CTGCTGCTGCTGAACTACTCNG---CAGGTGCAATGCTGCTCGAGCTGGGACTACTACGC 229
consensus_6508#1 CTCGAGGTGTGGGAATCGATCGTGCAGCAGATGGCCCTGCACGAGGTGGCCCGGTTCCGG 298
* * * * * * ** * *
consensus_6508#0 TTGTT-TCCAGGTACTGGATGCGATTTAAGGTTTAGAGTGCATTCCTTGCAGGGAGGGTC 294
consensus_6508#2 CGCTGATCTGAGCACTGCACCTGAGTGCTGCTCAAGTACTGATCCTGCACTGCGTGAAGT 289
consensus_6508#1 TGCGA--CCGGTCGCTCGTCCAGCAGTACCCGTTCGTGTCGAA--GACGATCCGGGACGC 354
* ** * * * * *
consensus_6508#0 AACCTCGATAGGTCGGAGGCATTACGTGCAAAAGCCCCTCAAGTGTTTTGTTTGTTACTT 354
consensus_6508#2 GCACTGTTCCTGGCTGNGGTGCAATG-GCTCATGCCT---GGGGCTGTGGAACTTCGACC 345
consensus_6508#1 GCAGAAGCCGCGCGAGGAGCGCAA-GCACTGCTGCGGCATGACGGTGCAGAACGAGGGCA 413
* * * * * * ** * *
consensus_6508#0 CAGTTT-TTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGT-TTAGGAACTG 412
consensus_6508#2 TGGGCC-CTGTGGCCTGACTTCGAGCTGGGCTGTGC---CTGAGCTGGA-CTCGGGCCTG 400
consensus_6508#1 TCGGCTACCGGGACCTGGACGAGCTGTTCACCCACCCGCAGGACCTGGAGTTCACGATCG 473
* * * * * * * * * * *
consensus_6508#0 TGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTA 472
consensus_6508#2 CAAACCTGCCGTCGGCAAAGAGCTGGCCAAGCTG-CAGTGAGCAGCAGCTGGCTGCGGGA 459
consensus_6508#1 AGATCCTGTCGATCG-AGAGCCCGGACGAGTACGAGAAGGAATCGTGGC-AGCTGAGCGA 531
* * * * * * ** *
consensus_6508#0 CGTAGAGCTTTTTAAATGTGTCTGTGTAATTGTTTGATTTGTTTAG-ATTAAATCTTCGC 531
consensus_6508#2 CGTCGAGGACCTGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTT-----------TTTGT 508
consensus_6508#1 CGACGAGAAGCGGGCACTGGT-TGGTCGGCTGCGCGAGCAGGGCAATGCCGCGTACCGGG 590
** *** ** * * * *
consensus_6508#0 TTCCTCTTGCTTATGAAAAGCGTACGGGC-ATACTTGGAGTGGAA-AATGAAGTCACAAA 589
consensus_6508#2 TTATT-TTATNAGGGAAAGGAGAGAGGTTTATTCTTTTGGGGATT-TTTGGTGTAGTAAT 566
consensus_6508#1 CGAACGATCTGACCGCGGCCCGGGACGCTTACTCGTACGCGACCGGCATCATCGAGCAGC 650
* * * * * * * * *
consensus_6508#0 CAAAAAAACATTTATTTCCCACAAAAAAGTCAAACATGTTCAAACACAGTTTTGGGTGTT 649
consensus_6508#2 CCAG-------------------------------------------------------- 570
consensus_6508#1 TGATGCTCAAGGAAAAACCCGACGAACCGGAAT--------------------------- 683
*
consensus_6508#0 GCACAGTTCCGGTTGAGGTGTCACGCGGTCGTCTTTAGGTTAAGGCACCGTAGACTTAAG 709
consensus_6508#2 ------------------------------------------------------------
consensus_6508#1 ------------------------------------------------------------
consensus_6508#0 CGTCAATATCATATTTAGTAGCTGTATGCACACAGTATGCTTATTACTCACACCACTCAG 769
consensus_6508#2 ------------------------------------------------------------
consensus_6508#1 ------------------------------------------------------------
consensus_6508#0 TGTCTTTCTCAGCTCGGTGTTGGTAGTTTCCAAAGGGTACTTTTTTGTCTACTCGCTCGA 829
consensus_6508#2 ------------------------------------------------------------
consensus_6508#1 ------------------------------------------------------------
consensus_6508#0 TGTACATTTCCAAGAAGAATATCCTTTTCCTCCCAAATTGTTAGATAGGTAATTGTGCCA 889
consensus_6508#2 ------------------------------------------------------------
consensus_6508#1 ------------------------------------------------------------
consensus_6508#0 TTAGCAAAACAAAAACTCAGTAAACTGCTAGGATGTATGGAGAGTATGAGAGTAATCAAT 949
consensus_6508#2 ------------------------------------------------------------
consensus_6508#1 ------------------------------------------------------------
consensus_6508#0 CGGCAACCAAAATCAGAGTTTCACGCCGCAAAAAAAAACACGAGTCAAAATANGTAATCT 1009
consensus_6508#2 ------------------------------------------------------------
consensus_6508#1 ------------------------------------------------------------
consensus_6508#0 A 1010
consensus_6508#2 -
consensus_6508#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||