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Anopheles gambiae
cluster # 6518 cluster # 6518       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6518#0 length = 1000 sequences # 4  
consensus_6518#1 length = 254 sequences # 1  

consensusID : consensus_6518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1000
fasta sequence
                              [CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAACTCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGATTGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTGAAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCAAGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACAGCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACAGACA-GATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT]

[+] EMBL BM600865             [CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAACTCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGATTGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTGAAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCAAGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACAGCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAATCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTACAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTG AAAAG AAACCATAT                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM594248             [                                                                                                                                                                                                                                                                      ccgGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACAGCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACAGACA GATGACTGATCGAAAA                    ]
[+] EMBL BM635105             [                                                                                                                                                                                                                                                                                                                   ccgCAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAAC                                              ]
[+] EMBL BM640937             [                                                                                                                                                                                                                                                                                                                                                        ccgGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACAGACAGGATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT]


>consensus_6518#0 CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAAC TCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGAT TGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTG AAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCA AGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACA GCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAA TTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGT TTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCA TATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGC TCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACC ATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACT GTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGT TGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAA AAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAAC GCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTA TTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACA GACAGATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT



consensusID : consensus_6518#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence
                              [GTCGAGGGCCAAGAATCGCCACGAGGNNTAGAAATGAAAATAGTTGCAAGTTCTAAACTCGTTGTAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGAACAAAAAAAAAACACAGTATGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGNAACGGCGGCAAGAGCATATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTAGGTGTNTGAAGGGAAGTTATTGTAACTAGAT]

[+] EMBL BX469271             [GTCGAGGGCCAAGAATCGCCACGAGGNNTAGAAATGAAAATAGTTGCAAGTTCTAAACTCGTTGTAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGAACAAAAAAAAAACACAGTATGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGNAACGGCGGCAAGAGCATATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTAGGTGTNTGAAGGGAAGTTATTGTAACTAGAT]


>consensus_6518#1 GTCGAGGGCCAAGAATCGCCACGAGGNNTAGAAATGAAAATAGTTGCAAGTTCTAAACTC GTTGTAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGAACAAAAAAAAAACACAGTA TGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGNAACGGCGGCAAGAGCAT ATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTAGGTGTNTGAAGGGAAGT TATTGTAACTAGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6518#0      CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAAC 60
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      TCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGAT 120
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      TGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTG 180
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      AAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCA 240
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      AGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACA 300
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      GCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAA 360
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      TTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGT 420
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      TTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCA 480
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      TATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGC 540
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      TCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACC 600
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      ATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACT 660
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      GTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGT 720
consensus_6518#1      --------------GTCG-AGGGCCAAGAATCGCCACGA-GGNNTAGAAATGAAAATAGT 44
                                      *  *   ***   **       * *    ***************

consensus_6518#0      TGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAA 780
consensus_6518#1      TGCAAGTTCTAAACTCGTTGTAAA-CGTACTGATCAGCGTTTGGACGAATGTCGAAGAAC 103
                      ***** ** *************** ******************************** * 

consensus_6518#0      AAAAAAAACACACAGTATGTCCAG-TTAACCTGTGTGAAAGTCCGAAGAACACAAAT--G 837
consensus_6518#1      AAAAAAAAAACACAGTATGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGN 163
                      ******** *************** ******************************     

consensus_6518#0      AACGC--GCAAGAG-ATATA-TTTATTTTC---ACCG--ATAG-TGGCAGCTACAATA-- 885
consensus_6518#1      AACGGCGGCAAGAGCATATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTA 223
                      ****   ******* ***** **** **     ****  **** ***********     

consensus_6518#0      ---GTGTTGAAGGAA-TTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCG 941
consensus_6518#1      GGTGTNTGAAGGGAAGTTATTGTAACTAGAT----------------------------- 254
                         ** *  * **** ***************                             

consensus_6518#0      GTTCACCGAAGAACACACAGACAGATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT 1000
consensus_6518#1      -----------------------------------------------------------
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)