These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1000 fasta sequence [CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAACTCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGATTGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTGAAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCAAGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACAGCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACAGACA-GATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT] [+] EMBL BM600865 [CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAACTCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGATTGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTGAAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCAAGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACAGCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAATCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTACAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTG AAAAG AAACCATAT ] [+] EMBL BM594248 [ ccgGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACAGCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACAGACA GATGACTGATCGAAAA ] [+] EMBL BM635105 [ ccgCAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAAC ] [+] EMBL BM640937 [ ccgGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACAGACAGGATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT] consensusID : consensus_6518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [GTCGAGGGCCAAGAATCGCCACGAGGNNTAGAAATGAAAATAGTTGCAAGTTCTAAACTCGTTGTAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGAACAAAAAAAAAACACAGTATGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGNAACGGCGGCAAGAGCATATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTAGGTGTNTGAAGGGAAGTTATTGTAACTAGAT] [+] EMBL BX469271 [GTCGAGGGCCAAGAATCGCCACGAGGNNTAGAAATGAAAATAGTTGCAAGTTCTAAACTCGTTGTAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGAACAAAAAAAAAACACAGTATGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGNAACGGCGGCAAGAGCATATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTAGGTGTNTGAAGGGAAGTTATTGTAACTAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6518#0 CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAAC 60 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 TCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGAT 120 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 TGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTG 180 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 AAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCA 240 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 AGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACA 300 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 GCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAA 360 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 TTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGT 420 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 TTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCA 480 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 TATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGC 540 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 TCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACC 600 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 ATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACT 660 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 GTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGT 720 consensus_6518#1 --------------GTCG-AGGGCCAAGAATCGCCACGA-GGNNTAGAAATGAAAATAGT 44 * * *** ** * * *************** consensus_6518#0 TGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAA 780 consensus_6518#1 TGCAAGTTCTAAACTCGTTGTAAA-CGTACTGATCAGCGTTTGGACGAATGTCGAAGAAC 103 ***** ** *************** ******************************** * consensus_6518#0 AAAAAAAACACACAGTATGTCCAG-TTAACCTGTGTGAAAGTCCGAAGAACACAAAT--G 837 consensus_6518#1 AAAAAAAAAACACAGTATGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGN 163 ******** *************** ****************************** consensus_6518#0 AACGC--GCAAGAG-ATATA-TTTATTTTC---ACCG--ATAG-TGGCAGCTACAATA-- 885 consensus_6518#1 AACGGCGGCAAGAGCATATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTA 223 **** ******* ***** **** ** **** **** *********** consensus_6518#0 ---GTGTTGAAGGAA-TTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCG 941 consensus_6518#1 GGTGTNTGAAGGGAAGTTATTGTAACTAGAT----------------------------- 254 ** * * **** *************** consensus_6518#0 GTTCACCGAAGAACACACAGACAGATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT 1000 consensus_6518#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||