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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1119 fasta sequence
[CCGAGGTTAGGCAGCACAGGACATGGCACAAGGGTGACGTCCAGCTGGACAAGCTGGACTCGCTGCTGCACAAAGCCGACAACGCGACGTACTCGATGAAGCATCAGACGGATCAGATGAAGAAGATTTCCAAGTAAGACGGGATCGATGACGATGCCGATGACGATGCTGATGATGAACGAATGACAAGCAGCAAAGGGGAAAGGCACTGCCATCCCTGTCGATGCAAACGATGTACGCTTATGAGGCAGAACGAAGTGTGTGCTATTATTATCCCAGCCAACATGCCAACATACTAGCTCCAGTGGCAATCGTAGCTTAGGAGAACCCTTTTCCGCCGACGTTGCAAAAGAAAAGGGACGATATCTTGATTATACAATCGTTAGTCGCTTCGATACTTTCGGATCTTGTTACAAGTAGTGTGTATCCTTTCTACCCAGGTCTACGCCCCAGGTTTGCTTCTCTGCTTCCCACTGTTCGATGTTAGCTGTGCGTACGAGGTTTACAATGTTACACGTTTAATGTTTAAGGGCTTTCCACTTCTGTTGACGCTCCCTCTTCTTTCAGCGCTTGCATGTTAAAGCGATCGGTCTTCCAGCAACAGAACACGACAACAACAACAACAAAAAAACGAAAAGAATATCCAAATTGTTAGTCAAAAAAGTACCCTTCTTTCACTTCTCGAGCGCTGTTTTAGGCTGCTATTTGCACTAAACTGAATTGGCCATTGTTTGCCGTGTGCGTCTTTGAGGGCGAAACCGATTGTGATATCTATAGTTTGTATGGGTTTTTTTTTGTGTGTGCAACTGTCTGTGTGCACATAGTTCGATGTCGCTTTTAGTTGATCGTACGCTAAGGGCAGGCCGACAGCTACGTCTGTGCATAGTTTCAGACGGGACGTGCGTGTTATTAGCCTATGTTTTTGCTCAGCCGATGCGGAAAACAGACATCAATTTACAGATCGATCCAGGAAGCGTCGTCGCAAGGTTTACACGGTGGCGTGACTCCGGCGGGAGATCTCAATAAGCGTAAGAAACGTTAACCACCAGCAATAATAATGTATTGAAGCTAAACAATAATTTAAATGTGTATTACAAACGATAAATAAAGGAAAGTACA]
[+] EMBL AL695220 [CCGAGGTTAGGCAGCACAGGACATGGCACAAGGGTGACGTCCAGCTGGACAAGCTGGACTCGCTGCTGCACAAAGCCGACAACGCGACGTACTCGATGAAGCATCAGACGGATCAGATGAAGAAGATTTCCAAGTAAGACGGGATCGATGACGATGCCGATGACGATGCTGATGATGAACGAATGACAAGCAGCAAAGGGGAAAGGCACTG CATCCCTGTCGATGCAAACGATGTACGCTTATGAGGCAGAACGAAGTGTGTGCTATTATTATCCCAGCCAACATGCCAACATACTAGCTCCAGTGGCAATCGTAGCTTAGGAGAACCCTTTTCCGCCGACGTTGCAAAAGAAAGGGGACGATATCTTGATTATACAATCGTTAGTCGCTTCGATACTTTCGGATCTTGTTACAAGTAGTGTGTATCCTTTCTACCCAGGTCTACGCCCCAGGTTTGCTTCTCTGCTTCC ]
[+] EMBL BX609008 [ AGCAAAGGGGAAAGGCACTGCCTTTCCTGTCGATGCTAACGATGTACGCTTATGAGGCAGAACGAAGTGTGTGCTATTATTATCCCAGCCAACATGCCAATATACTAGCTCCAGTGGCAATCGTAGCTTTGGAGAACCCTTTTCCGCCGACGTTGCAAAAGAAAAGGGACGATATCTTGATTATACAATCGTTAGTCGCTTCGATACTTTCGGATCTTGTTACAAGTAGTGTGTATCCTTTCTACCCAGGTCTACGCCCCAGGTTTGCTTTTCTGCTTCCCACTGTTCGATGTTAGCTGTGCGTACGAGGTTTACAATGTTACACGTTTAATGTTTAAGGGCTTTCCACTTCTGTTGACGCTCCCTCTTCTTTCAGCGCTTGCATGTTAAAGCGATCGGTCTTCCAGCAACAGAACACGACAACAACAACAACAAAAAAACGAAAAGAATATCCAAATTGTTAGTCAAAAAAGTACCCTTCTTTCACTTCTCGAGCGCTGTTTTAGGCTGCTATTTGCACTAAACTGAATTGGCCATTGTTTGCCGTGTGCGTCTT ]
[+] EMBL BM593908 [ ccgGGCACTGCCATCCCTGTCGATGCAAACGATGTACGCTTATGAGGCAGAACGAAGTGTGTGCTATTATTATCCCAGCCAACATGCCAACATACTAGCTCCAGTGGCAATCGTAGCTTAGGAGAACCCTTTTCCGCCGACGTTGCAAAAGAAAAGGGACGATATCTTGATTATACAATCGTTAGTCGCTTCGATACTTTCGGATCTTGTTACAAGTAGTGTGTATCCTTTCTACCCAGGTCTACGCCCCAGGTTTGCTTCTCTGCTTCCCACTGTTCGATGTTAGCTGTGCGTACGAGGTTTACAATGTTACACGTTTAATGTTTAAGGGCTTTCCACTTCTGTTGACGCTCCCTCTTCTTTCAGCGC CGCATGTTAAAGCGATCGGTCTTCCAGCAACAGAACACGACAACAACAACAACAAAAAAACGAAAATAATATCCAAATTGTTAGTCAAAAAAGTACCCTTCTTTCACTTCTCGAGCGCTGTTTTAGGCTGCTATTTGCACTAAACTGAATTGGCCATTGTTTGCCGTGTGCGTCTTTGAGGGCGAAACCGATTGTGATATCTATAGTTTGTATGGGTTTTTTTTTGTGTGTGCAACTGTCTGTGTGCACATAGTTCGATGTCGCTTTTAGTTGATCGTACGCTAAGGGCAGGCCGACAGCTACGTCTGTGCATAGTTTCAGACGGGACGT ]
[+] EMBL BX615568 [ TTACACGTTTAATGTTTAAGGGCTTTCCACTTCTGTTGACGCTCCCTCTTCTTTCAGCGCTTGCATGTTAAAGCGATCGGTCTTCCAGCAACAGAACACGACAACAACAACAACAAAAAAACGAAAAGAATATCCAAATTGTTAGTCAAAAAAGTACCCTTCTTTCACTTCTCGAGCGCTGTTTTAGGCTGCTATTTGCACTAAACTGAATTGGCCATTGTTTGCCGTGTGCGTCTTTGAGGGCGAAACCGATTGTGATATCTATAGTTTGTATGGG TTTTTTTTGTGTGTGCAACTGTCTGTGTGCACATAGTTCGATGTCGC TTTAGTTGATCGTACGCTAAGGGCAGGCCGACAGCTACGTCTGTGCATAGTTTCAGAC GGACGTGCGTGTTATTAGCCTATGTTTTTGCTCAGCCGATGCGGAAAACAGACATCAATTTACAGATCGATCCAGGAAGCGTCGTCGCAAGGTTTACACGGTGGCGTGACTCCGGCGGGAGATCTCAATAAGCGTAAGAAACGTTAACCACCAGCAATAATAATGTATTGAAGCTAAACAATAATTTAAATGTGTATTACAAACGATAAATAAAGGAAAGTACA]
consensusID : consensus_6519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CCGTCTTCCCCTGTAGTAGCATTCCCGTTGTGTAGCAGTAGCAAACCGTACCGTTGCTTAGCCGAACACAAATCATCCTCCTCGGCGGGTGGGTAGTAAGCACCAGCATTATTTTTAGGGTAGCAAGCACCGCAACAGTACAATCCAAACGAACCGAATCGAACACACAGTCGAAACGCAATGGCAGAAGGCACGTACGAGTATGAGTGTATGCGAGCGGAACTGCTCGGGCTGGCCCATCCCAGTCGGGAGGAGTTCGAGGAGAAGCAAAAGCTGCGCCAGGAGACGGAAGTGGAGGAGCAGCTCACCGAGCAGTTGAAGGATGTGGACTTGCAGGGCGAGTCGCTGCAGGGCACGTCGGGCAAGATGGACGAGCTGACGAACATACTGACCGCGACGCAGCAAAAGATCAACAAGTTTAAGGTGGCGTGCGGCAGTTTGACCAGCCTGCTGAAGCTGCGCCCGTCGACGCCCAGCAGCGAACCGGCCGCCGGTGCAGCGGAAGGAAAGTCCATCAACGACGCGCTGGACACGCTGGATACGATGAAGGACCTGAACGCAGCCTCGGACGCTACGGTGGCCAAGGCGGCAGCACAGGACATCGGCACCAAGGTGACGTCCCAGCTGGACAAGCTGGACTCGTTGCTGCACAAAGCCGACAATGCGACGTACTCCATGAAGCATCAAA]
[+] EMBL BM622738 [CCGTCTTCCCCTGTAGTAGCATTCCCGTTGTGTAGCAGTAGCAAACCGTACCGTTGCTTAGCCGAACACAAATCATCCTCCTCGGCGGGTGGGTAGTAAGCACCAGCATTATTTTTAGGGTAGCAAGCACCGCAACAGTACAATCCAAACGAACCGAATCGAACACACAGTCGAAACGCAATGGCAGAAGGCACGTACGAGTATGAGTGTATGCGAGCGGAACTGCTCGGGCTGGCCCATCCCAGTCGGGAGGAGTTCGAGGAGAAGCAAAAGCTGCGCCAGGAGACGGAAGTGGAGGAGCAGCTCACCGAGCAGTTGAAGGATGTGGACTTGCAGGGCGAGTCGCTGCAGGGCACGTCGGGCAAGATGGACGAGCTGACGAACATACTGACCGCGACGCAGCAAAAGATCAACAAGTTTAAGGTGGCGTGCGGCAGTTTGACCAGCCTGCTGAAGCTGCGCCCGTCGACGCCCAGCAGCGAACCGGCCGCCGGTGCAGCGGAAGGAAAGTCCATCAACGACGCGCTGGACACGCTGGATACGATGAAGGACCTGAACGCAGCCTCGGACGCTACGGTGGCCAAGGCGGCAGCACAGGACATCGGCACCAAGGTGACGTCCCAGCTGGACAAGCTGGACTCGTTGCTGCACAAAGCCGACAATGCGACGTACTCCATGAAGCATCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6519#0 ----------------CCGAGGTTAGGCAGCACAGGA-CATGGCACAAGGGTGACGTCCA 43
consensus_6519#1 CCGTCTTCCCCTGTAGTAGCATTCCCGTTGTGTAGCAGTAGCAAACCGTACCGTTGCTTA 60
* * * * ** * * ** * * *
consensus_6519#0 GCTGGACAAGCTGGACTCGCTGCTGCACAAAGCCGACAACG--CGACGTACTCGATGAAG 101
consensus_6519#1 GCCGAACACAAATCATCCTCCTCGGCGGGTGGGTAGTAAGCACCAGCATTATTTTTAGGG 120
** * *** * * * * ** * ** * * * * * *
consensus_6519#0 CATCAGACGGATCAGATGAAGAAGATTTCCAAGTAAGACGGGATCGATGACGATGCCGAT 161
consensus_6519#1 TAGCAAGCACCGCAACAGTACAA----TCCAAACGA-ACCGAATCGAACACACAGTCGAA 175
* ** * ** * * ** ***** * ** * ***** ** * ***
consensus_6519#0 G-ACGATGCTGATGATGAACGAATGACAAGCAGCAAAGGGGAAAGGCACTGC-CATCCCT 219
consensus_6519#1 ACGCAATGGC-AGAAGGCACGTACGAGTATGAGTGTATGCGAGCGGAACTGCTCGGGCTG 234
* *** * * * *** * ** * ** * * ** ** ***** * *
consensus_6519#0 GTCGATGCAAACGATGTACGCTTATGAGGCAGAACGAAGTGTGTGCTATTATTATCCCAG 279
consensus_6519#1 GCCCATCCCAGTCGGG-AGGAGTTCGAGGAGAAGCAAAAGCTGCGCCAGGA--GACGGAA 291
* * ** * * * * * * **** * * ** ** ** * * * *
consensus_6519#0 CCAACATGCCAACATACTAGCTCCAGTGGCAATCGTAGCTTAGGAGAACCCTTTTCCGCC 339
consensus_6519#1 GTGGAGGAGCAGCTCACCGAG-CAGTTGAAGGATGTGGACTTGCAGGGCGAGTCGCTGCA 350
** * ** * ** ** * * * ** * * * **
consensus_6519#0 GACGTTGCAAAAGAAAAGGGACGATATCTTGATTATAC-AATCGTTAGTCGCTTCGATAC 398
consensus_6519#1 GGGCACGTCGGGCAAGATGGACGAGCTGACGAACATACTGACCGCGA--CGCAGCAAAAG 408
* * ** * ****** * ** **** * ** * *** * * *
consensus_6519#0 TTTCGGATCTTGTTACAAGTAGTGTGTATCCTTTCTACCCAGGTCTACGCCCCAGGTTTG 458
consensus_6519#1 ATC---AACAAGTTTAAGGTGGCGTGCGGCAGTTTGACC--AGCCT--GCTGAAGCTGCG 461
* * * *** * ** * *** * ** *** * ** ** ** * *
consensus_6519#0 CTTCTCTGCTTCCCACTGTTCGATGTTAGCTGTGCGTACGAGGTTTACAATGTTACACGT 518
consensus_6519#1 CCCGTCGACGCCCAGCAG--CGA-ACCGGCCGCCGGTGCAGCGGAAGGAAAGTC-CATCA 517
* ** * ** * * *** ** * ** * * ** ** **
consensus_6519#0 TTAATGTTTAAGGGCTTTCCACTTCTGTTGACGCTCCCTCTTCTTTCAGCGCTTGCATGT 578
consensus_6519#1 ACGACGCGCT-GGACACGCTGGATACGATGAAGGACC---TGAACGCAGC-CTCGGACGC 572
* * ** * * * * *** * ** * **** ** * * *
consensus_6519#0 TAAAGCGATCGGTCTTCCAGCAACAGAACACGACAACAACAACAACAAAAAAACGAAAAG 638
consensus_6519#1 TACGGTGGCCAA------GGCGGCAGCACAGGACATCGGCACCAA------------GGT 614
** * * * ** *** *** **** * ** ***
consensus_6519#0 AATATCCAAATTGTTAGTCAAAAAAGTACCCTTCTTTCACTTCTCGAGCGCTGTTTTAGG 698
consensus_6519#1 GACGTCCCAGCTG---GACAAGCTGGACTCGTTGCTGCACAAAGCCGACAATGCGACGTA 671
* *** * ** * *** * * ** * *** * * **
consensus_6519#0 CTGCTATTTGCACTAAACTGAATTGGCCATTGTTTGCCGTGTGCGTCTTTGAGGGCGAAA 758
consensus_6519#1 CTCCATGAAGCATCAAA------------------------------------------- 688
** * *** ***
consensus_6519#0 CCGATTGTGATATCTATAGTTTGTATGGGTTTTTTTTTGTGTGTGCAACTGTCTGTGTGC 818
consensus_6519#1 ------------------------------------------------------------
consensus_6519#0 ACATAGTTCGATGTCGCTTTTAGTTGATCGTACGCTAAGGGCAGGCCGACAGCTACGTCT 878
consensus_6519#1 ------------------------------------------------------------
consensus_6519#0 GTGCATAGTTTCAGACGGGACGTGCGTGTTATTAGCCTATGTTTTTGCTCAGCCGATGCG 938
consensus_6519#1 ------------------------------------------------------------
consensus_6519#0 GAAAACAGACATCAATTTACAGATCGATCCAGGAAGCGTCGTCGCAAGGTTTACACGGTG 998
consensus_6519#1 ------------------------------------------------------------
consensus_6519#0 GCGTGACTCCGGCGGGAGATCTCAATAAGCGTAAGAAACGTTAACCACCAGCAATAATAA 1058
consensus_6519#1 ------------------------------------------------------------
consensus_6519#0 TGTATTGAAGCTAAACAATAATTTAAATGTGTATTACAAACGATAAATAAAGGAAAGTAC 1118
consensus_6519#1 ------------------------------------------------------------
consensus_6519#0 A 1119
consensus_6519#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||