These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 995 fasta sequence [CCGCGGGGTCAACGCAGCTGGCCGAGCTTGCCAGTGGATGAGTCAAGCGACCTCGTTTCGAAGTCGGGCGAAAACAAAATGAAGGAAATTCCATGTCTGCGTATGTGTGTGCGTGTGCGTGTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAAAACAAGAAAAAATCATTACATACAACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGCGTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATTGTAGTGCGCGATGGCGCAAAGAAATGTAAAGTGAAAGTAAAAATCAAAGGGAACGCTACTACTACTACTACTGCTACTACTGCTACTACTAACATTCCAATTCCAACGATTACTATAAAAAAGGCAACAAAGACTTTAAGGACACATGCAAACGTAGATAGTAACTGTCCACTCTCAGTCTCTCTCGTCATTGTTTGTTTTTTTGTTTATCGTTTTCCTGGGTATTTCTCTGTTCTGCATTCCATTCATATCAAGCCAAGCGCTAGCTCTGTTCGGAACCATAATGTAATAGGGATATTTCCAAACGAGCGAATGTTAATCTCTGTCGTACTCTCCACATATATCCTGTTTCCGTGTGCGCTTTGCCACACGAGTGCAATTTAGTGCAATCATCCGGGCCCGCGGCCAGCGGAGCATTCAGTTCCTAGAGGCGGCATACATAAAACATGCTGACTTTAGTTTAGTGTACATGACCCGCCACTGTCTCGCTCTCTCTCTCTCTCTCTTTTATGCGCAACTGTACCGCGTAAGCGACCACGTGGAGCTAACCCTCTTTACCGCATGCTCCCGCCGCCACACTTTCCCACGTGCAAACGCCGACTTTTCTCTGTGATCATCA] [+] EMBL BM575270 [CCGCGGGGTCAACGCAGCTGGCCGAGCTTGCCAGTGGATGAGTCAAGCGACCTCGTTTCGAAGTCGGGCGAAAACAAAATGAAGGAAATTCCATGTCTGCGTATGTGTGTGCGTGTGCGTGTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAAAACAAGAAAAAATCATTACATACAACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGCGTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATTGTAGTGCGCGATGGCGCAAAGAAATGTAAAGTGAAAGTAAAAATCAAAGGGAACGCTACTACTACTACTACTGCTACTACTGCTACTACTAACATTCCAATTCCAACGATTACTATAAAAAAGGCAACAAAGACTTTAAGGACACATGCAAACGTAGATAGTAACTGTCCACTCTCAGTCTCTCTCGTCATTGTTTGTTTTTTTGTTTATCGTTTTCCTGGGTATTTCTCTGTTCTGCATTCCATT ] [+] EMBL BX624813 [ AGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATTGTAGTGCGCGATGGCGCAAAGAAATGTAAAGTGAAAGTAAAAATCAAAGGGAACGCTACTACTACTACTACTGCTACTACTGCTACTACTAACATTCCAATTCCAACGATTACTATAAAAAAGGCAACAAAGACTTTAAGGACACATGCAAACGTAGATAGTAACTGTCCACTCTCAGTCTCTCTCGTCATTGTTTGTTTTTTTGTTTATCGTTTTCCTGTGTATTTCTCTGTTCTGCATTCCATTCATATCAAGCCAAGCGCTAGCTCTGTTCGGAACCATAATGTAATAGGGATATTTCCAAACGAGCGAATGTTAATCTCTGTCGTACTCTCCACATATATCCTGTTTCCGTGTGCGCTTTGCCACACGAGTGCAATTTAGTGCAATCATCCGGGCCCGCGGCCAGCGGAGCATTCAGTTCCTAGAGGCGGCATACATAAAACATGCTGACTTTAGTTTAGTGTACATGACCCGCCACTGTCTCGCTCTCTCTCTCTCTCTCTTTTATGCGCAACTGTACCGCGTAAGCGACCACGTGGAGCTAACCCTCTTTACCGCATGCTCCCGCCGCCACACTTTCCCACGTGCAAACGCCGACTTTTCTCTGTGATCATCA] consensusID : consensus_6523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 843 fasta sequence [CAGAATNGCCCGAGGTCAAACACAAACAACGTTGTAAGNGCTTACCCTGGCTTAGACCTTAAGTTAAACCGTCGGTCTAGAGTTGAGTTGAGAACATTTGCTGCGCGTGATAAACCACCAACCCTGGTGAAAATGCCCGTGGGAAGTGAAAAGATGAGTGTAGCAGCAGGAAAACTGTTTGGANAAACCGACAAAATCGACATCAAAACAAGGCATCACTTGTTTACCATTTTGAAAAAACAAAGAAGATAAAAAACCGTAGCATCACGTTACCGGCCTGTTTGCAAATATTTTAAGTGTACGGGGTGNGCTGCAACACACGTACAAAATCGTTGCGTACCAATGTATNGTGCAGTTGACGCCTGGACCGAGGAAGAATGTTTAACGCTGTGCACATACGGTGAACCATTATCCATAGGGCTTNACGCANGAGAAGCGCGTGTGCNAAATGGGTGCACATAACATGCTATCTCAGTACATAGAATACGACAGAACAAAAGANAAGGGACTGGAGTCACCAACAAACCACAACCTGTCGATACAAACCANAATNTACCATCTATCGCACCAANNNAGNNAGCANTGCGGCTACTCAGCACAGACTCNGGCCCTCCGAATCCCGAACGGCTACGGGCACCACAAAGACCAAACACTCAACCTTACCACCACTACGCACCAACCCACAACGCCNCTGANGCAACAGAGGCNANAANAACGCAAGAAACGAAACACAACACCACAAGCNANACAAANCCCAAACCTANCCGNAGAAATCATGCACCCAACCACCAAGGCAGCCTGNNCACAAGCNGCCNCCNACATCNCCCTNTCCTGCGACTCAAC] [+] EMBL AL931237 [CAGAATNGCCCGAGGTCAAACACAAACAACGTTGTAAGNGCTTACCCTGGCTTAGACCTTAAGTTAAACCGTCGGTCTAGAGTTGAGTTGAGAACATTTGCTGCGCGTGATAAACCACCAACCCTGGTGAAAATGCCCGTGGGAAGTGAAAAGATGAGTGTAGCAGCAGGAAAACTGTTTGGANAAACCGACAAAATCGACATCAAAACAAGGCATCACTTGTTTACCATTTTGAAAAAACAAAGAAGATAAAAAACCGTAGCATCACGTTACCGGCCTGTTTGCAAATATTTTAAGTGTACGGGGTGNGCTGCAACACACGTACAAAATCGTTGCGTACCAATGTATNGTGCAGTTGACGCCTGGACCGAGGAAGAATGTTTAACGCTGTGCACATACGGTGAACCATTATCCATAGGGCTTNACGCANGAGAAGCGCGTGTGCNAAATGGGTGCACATAACATGCTATCTCAGTACATAGAATACGACAGAACAAAAGANAAGGGACTGGAGTCACCAACAAACCACAACCTGTCGATACAAACCANAATNTACCATCTATCGCACCAANNNAGNNAGCANTGCGGCTACTCAGCACAGACTCNGGCCCTCCGAATCCCGAACGGCTACGGGCACCACAAAGACCAAACACTCAACCTTACCACCACTACGCACCAACCCACAACGCCNCTGANGCAACAGAGGCNANAANAACGCAAGAAACGAAACACAACACCACAAGCNANACAAANCCCAAACCTANCCGNAGAAATCATGCACCCAACCACCAAGGCAGCCTGNNCACAAGCNGCCNCCNACATCNCCCTNTCCTGCGACTCAAC] consensusID : consensus_6523#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGATAGGGCTTAACGCAGAGAAGCGCGTGTGCAAATGGGTGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGATGAAGAAAAACAAAAAACCTGTCGATAAAACAAAATTAAAATTATCGCACTAAAGTAGATGGGTATCAGTTTTGATTGGATTGATTTGATGTCGGACAAAACAAATCACTAGAATAGACAGAAAAGCATTAGCAAAAGCAACAAACAAACAAACACACAAAGCACACAACAATTCTAACGAGATTGTACTAAGAGAAGCAGCTGTAAAGCGAGACAGATCGCATTCGGATTAATTTAAAGCAATTTGAATCTGATTTGTGCCAGCAACTTTTAACGCTTGAAGGCGAACGTGTGTTGTAAAGTGTGCATGTGTGCATGTGTATGTGTGTGCGTGTGCGTGTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAACAAGAAAAAATCATTACATACAACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGCGTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATT] [+] EMBL BM627038 [CCGATAGGGCTTAACGCAGAGAAGCGCGTGTGCAAATGGGTGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGATGAAGAAAAACAAAAAACCTGTCGATAAAACAAAATTAAAATTATCGCACTAAAGTAGATGGGTATCAGTTTTGATTGGATTGATTTGATGTCGGACAAAACAAATCACTAGAATAGACAGAAAAGCATTAGCAAAAGCAACAAACAAACAAACACACAAAGCACACAACAATTCTAACGAGATTGTACTAAGAGAAGCAGCTGTAAAGCGAGACAGATCGCATTCGGATTAATTTAAAGCAATTTGAATCTGATTTGTGCCAGCAACTTTTAACGCTTGAAGGCGAACGTGTGTTGTAAAGTGTGCATGTGTGCATGTGTATGTGTGTGCGTGTGCGTGTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAACAAGAAAAAATCATTACATACAACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGCGTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATT] consensusID : consensus_6523#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [CCGCGGACGCGTGGGACCACCAACCCTGGGAAAACCCCCACGTGGGAAGGAAAAGATGAGGTAGCAGCAGGAAAATGTTTGGTAAACCGACAAAATCGACATCAAAAAAGGCGCATCATTGTTTAACATTTGAAAAAAAAAGAAGAAGAAAAAACCGTAGCATCGCGTTACCGGCCTGTTTGCAAATATTTTAAGTGTACGGGGTGGCGCCAACACACGTACAAAATCGTTGCCGTACCAATGTTTGTGCAGTTGACGCCGGACCGAGGAAGAATGTTAACGCTGTGCACATACGGCGAACCACTATCCATAGGGCTTAACGCAGAGAAGCGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGATGGAGAAAAACAAAAAACCTGTCGATAAAACAAAATTAAAATTATCGCACTAAAGTAGATGGGTATCAGTTTTGATTGGATTGATTTGATGTCGGACAAAACAAATCACTAGAATAGACAAAAAAGCATTAGCAAAAGCAACAAACAAACAAACACACAAAGCACACAACAATTCTAACGAGATTGTACTAAGAGAAGCAGCTGTAAAGACGAGACAGATCGCATTCGGATTAATTTAAAGCAATT] [+] EMBL BM600068 [CCGCGGACGCGTGGGACCACCAACCCTGGGAAAACCCCCACGTGGGAAGGAAAAGATGAGGTAGCAGCAGGAAAATGTTTGGTAAACCGACAAAATCGACATCAAAAAAGGCGCATCATTGTTTAACATTTGAAAAAAAAAGAAGAAGAAAAAACCGTAGCATCGCGTTACCGGCCTGTTTGCAAATATTTTAAGTGTACGGGGTGGCGCCAACACACGTACAAAATCGTTGCCGTACCAATGTTTGTGCAGTTGACGCCGGACCGAGGAAGAATGTTAACGCTGTGCACATACGGCGAACCACTATCCATAGGGCTTAACGCAGAGAAGCGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGATGGAGAAAAACAAAAAACCTGTCGATAAAACAAAATTAAAATTATCGCACTAAAGTAGATGGGTATCAGTTTTGATTGGATTGATTTGATGTCGGACAAAACAAATCACTAGAATAGACAAAAAAGCATTAGCAAAAGCAACAAACAAACAAACACACAAAGCACACAACAATTCTAACGAGATTGTACTAAGAGAAGCAGCTGTAAAGACGAGACAGATCGCATTCGGATTAATTTAAAGCAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6523#1 -----CAGAATNGCCCGAGGTCAAACACAAACAACGTTGTAAGNGCTTACCCTGGCTTAG 55 consensus_6523#3 ------------------------------------------------------------ consensus_6523#2 ------------------------------------------------------------ consensus_6523#0 CCGCGGGGTCAACGCAGCTGGCCGAGCTTGCCAGTGGATGAGTCAAGCGACCTCGTTTCG 60 consensus_6523#1 ACCTTAAGTTAAACCGTCGGTCTAGAGTTGAGTTGAGAACATTTGC-TGCGCGTGATAAA 114 consensus_6523#3 ------------------------------------------CCGC-GG-ACGCGTGGGA 16 consensus_6523#2 --------------------------------CCGATAGGGCTTAA-CGCAGAGAAGCGC 27 consensus_6523#0 AAGTCGGGCGAAAACAAAATGAAGGAAATTCCATGTCTGCGTATGTGTGTGCGTGTGCGT 120 * consensus_6523#1 CCACCAACCCTGGTGAAAATGCC-CGTGGGAAGTGAAAAGATGAGTGTAGCAGCA---GG 170 consensus_6523#3 CCACCAACCCTGGGAAAACCCCCACGTGGGAAG-GAAAAGATGAG-GTAGCAGCA---GG 71 consensus_6523#2 GTGTGCAAATGGGTGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATA-AG 86 consensus_6523#0 GTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGT 180 * * * * * * consensus_6523#1 AAAACTGTTTGGANAAACCGACAAAATCGACATCAAAACAAG---GCATCACTTGTTTAC 227 consensus_6523#3 AAAA-TGTTTGG-TAAACCGACAAAATCGACATCAAAAAAGGC--GCATCA-TTGTTTAA 126 consensus_6523#2 AAAGGGGATGAAGAAAAACAAAAAACCTGTCGATAAAACAAA-----ATTA--AAATTAT 139 consensus_6523#0 GTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAAAACAAGAAAAAATCA-TTACATAC 239 * *** * * ** **** * ** * ** consensus_6523#1 CATTTTGAAAAAACAAAGAAGATAAAAAACCGTAGCATCACGTTACCGGCCTGTTTGCAA 287 consensus_6523#3 CATTT-GAAAAAAAAAGAAGAAGAAAAAACCGTAGCATCGCGTTACCGGCCTGTTTGCAA 185 consensus_6523#2 CGC--------ACTAAAGTAGATGGGTATCAGT--TTTGATTGGATTGATTTGATGTCGG 189 consensus_6523#0 AACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGC 299 * ** * * * * consensus_6523#1 ATATTTTAAGTGTACGGGGTGNGCTGCAACAC------ACGTACAAAATCGTTGC--GTA 339 consensus_6523#3 ATATTTTAAGTGTACGGGGTGG-CGCCAACAC------ACGTACAAAATCGTTGCC-GTA 237 consensus_6523#2 ACAAAACAAATCACTAGAATAGACAGAAAAGC------ATTAGCAAAAGCAACAAACAAA 243 consensus_6523#0 GTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATT 359 * * * * * * *** consensus_6523#1 CCAATGTATNGTGCAGT-TGACGC-CTGGACCGAGGAAGAATGTTTAACGCT-GTGCACA 396 consensus_6523#3 CCAATGT-TTGTGCAGT-TGACGC-C-GGACCGAGGAAGAATGTT-AACGCT-GTGCACA 291 consensus_6523#2 CAAACACACAAAGCACA-CAACAA-TTCTAACGAGATTG--TACTAAGAGAA-GCAGCTG 298 consensus_6523#0 TCCCCTCCCCCCCCATTGTAGTGCGCGATGGCGCAAAGAAATGTAAAGTGAAAGTAAAAA 419 ** ** * * * * consensus_6523#1 TACGGTGAACCATTATCCATAGGGCTTNACGCANGAGAAGCGCGTGTGCNAAATGGGTGC 456 consensus_6523#3 TACGGCGAACCACTATCCATAGGGCTTAACGCAG-AGAAGCGCA---------------- 334 consensus_6523#2 TAAAGCGAGACAGATCGCATTCGGATTAATTTAA-AGCAATTTGAATCTGATTT------ 351 consensus_6523#0 TCAAAGGGAACGCTACTACTACTACTACTGCTACTACTGCTACTACTAACATTCCAATTC 479 * * * * * * * consensus_6523#1 ACATAACATGCTATCTCAGTACATAGAATACGACAG-AACAAAAGANAAGGGACTGGAGT 515 consensus_6523#3 --ATAACATGCT-TTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGA-TGGAGA 390 consensus_6523#2 --GTGCCAGCAACTTTTAACGC-TTGAAGGCGAACGTGTGTTGTAAAGTGTGCATGTGTG 408 consensus_6523#0 CAACGATTACTATAAAAAAGGCAACAAAGACTTTAAGGACACATGCAAACGTA-GATAGT 538 * * ** * consensus_6523#1 CACCAACAAACCACAACCTGTCGATACAAACCANAATNTACCATCTATCGCA--CCAANN 573 consensus_6523#3 AA--AACAAAA---AACCTGTCGATAAAA--CAAAATTAA--AATTATCGCA--CTAAAG 439 consensus_6523#2 CATGTGTATGTGTGTGCGTGTGCGTGTATG-TGTAATGTTATGAAGAATTCC--TTTGTA 465 consensus_6523#0 AACTGTCCACTCTCAGTCTCTCTCGTCATTGTTTGTTTTTTTGTTTATCGTTTTCCTGGG 598 * * * * * * consensus_6523#1 NAGNNAGCANTGCGGCTACTCA---GCACAGACTCNGGCCCTCCGAATCCCGAACGGCTA 630 consensus_6523#3 TAGATGGGTAT---------CA---GTTTTGATTGGATTGATTTGA-TGTCGGACAAAAC 486 consensus_6523#2 CAGTGCGTGTT---------AG---CTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACA 513 consensus_6523#0 TATTTCTCTGTTCTGCATTCCATTCATATCAAGCCAAGCGCTAGCTCTGTTCGGAACCAT 658 * * * * consensus_6523#1 CGGGCACCACAAAGA---CCAAAC-ACTCAACCTTAC-CACCACTACGCACCAACCCACA 685 consensus_6523#3 AAATCACTAGAATAG---ACAAAA-A---AGCATTAG-CAAAAGCAACAAACAAACAAAC 538 consensus_6523#2 AACAAATAAAAAAAA---ACAAGA-AAAAATCATTACATACAACAAAAGAAAAGAAAAGA 569 consensus_6523#0 AATGTAATAGGGATATTTCCAAACGAGCGAATGTTAATCTCTGTCGTACTCTCCACATAT 718 * * *** * * *** consensus_6523#1 ACGCCNCTGANGCAACAG--AGGCNANAANAACGCAAG--AAACGAAACAC--AACACCA 739 consensus_6523#3 ACACAAAGCACACAACAA--TTCTAACGAGATTGTACT--AAGAGAAGCA----GCTGTA 590 consensus_6523#2 AAAGAAAATATTTAAAAA--CAAAACGAAAGACTTAAA--AAGGCGTAAA---ACGAGCG 622 consensus_6523#0 ATCCTGTTTCCGTGTGCGCTTTGCCACACGAGTGCAATTTAGTGCAATCATCCGGGCCCG 778 * * * * consensus_6523#1 CAAGCNANACAAANCCCAAACCT----ANCCGNAGAAATCATGCACCCAACCACCAAGGC 795 consensus_6523#3 AAGACGAGACAGATCGCATTCGG----ATTAATTTAAAGCAATT---------------- 630 consensus_6523#2 TAGGGCAGAGAATATAGAGCTTT----TTTATATACAATTTTATGTTCCATTTCCCCTCC 678 consensus_6523#0 CGGCCAGCGGAGCATTCAGTTCCTAGAGGCGGCATACATAAAACATGCTGACTTTAGTTT 838 * * * consensus_6523#1 AGCCTGNNC-ACAAGCNGCCNCCNACATCNCCCTNTCCTGCGACTCAAC----------- 843 consensus_6523#3 ------------------------------------------------------------ consensus_6523#2 CCCCCCATT--------------------------------------------------- 687 consensus_6523#0 AGTGTACATGACCCGCCACTGTCTCGCTCTCTCTCTCTCTCTCTTTTATGCGCAACTGTA 898 consensus_6523#1 ------------------------------------------------------------ consensus_6523#3 ------------------------------------------------------------ consensus_6523#2 ------------------------------------------------------------ consensus_6523#0 CCGCGTAAGCGACCACGTGGAGCTAACCCTCTTTACCGCATGCTCCCGCCGCCACACTTT 958 consensus_6523#1 ------------------------------------- consensus_6523#3 ------------------------------------- consensus_6523#2 ------------------------------------- consensus_6523#0 CCCACGTGCAAACGCCGACTTTTCTCTGTGATCATCA 995 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||