cluster # 6524

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Anopheles gambiae
cluster # 6524 cluster # 6524 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6524#0 length = 659 sequences # 4

consensus_6524#1 length = 496 sequences # 1

consensusID : consensus_6524#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 659
fasta sequence

                              [CCGCGGACGCGTGGGCGATAGCGCGACAAAAAATGGACAAAAATGGTCGGTCCAGTGGTGTCTCAAACCCAGACCGTGCACACTCCTGCTTTGGAGTGAACCTAGCAAGTCGCACCGTCGTCTAGCAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAACAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAAACCG--TTTTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAAACACACCAGAG-GTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGAACCTAAGCAGAAAC---AAAAAACCCATCTAGCCAAAAACAAAAAAAATCTCCAATTCCTAATACAATTTGCACAGCGCGCTTTTCACTGGGATAAGTCTGTTGTGGTTCTTCGTGTCTTGTACATTGCCAACGCTACCTAGTAGCAAGCGCATGAGAGATCTGAGCTGGGAACCACCAACTACGATCGAGCAGAGCTAGAGTTTTAGTGCGTTTAAGAAATGTAAAAT------GGTGAATTCGACGTTCGAATAAACAAAAAAAGCACACACA]

[+] EMBL BM632666             [CCGCGGACGCGTGGGCGATAGCGCGACAAAAAATGGACAAAAATGGTCGGTCCAGTGGTGTCTCAAACCCAGACCGTGCACACTCCTGCTTTGGAGTGAACCTAGCAAGTCGCACCGTCGTCTAGCAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAGCAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAACCCGTTTTTTTTGAACAAAGAACCCGAACTAGTAGTACCGCTGCTACTACTACACATCCCGTAAACACACCAGAG GTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGCACCTAAGCAGAAACAAAAAAAAACCCATCTAGCCAAAAAC   AAAAATCTCCAATTTCTAATGCAATTTGCACACCGCGCTTTTCACTGGGATAAGTCTTTTGTGGTTCTTCGTGTC TGTACATTGCCAATGCTACCTAGTAGTAAGCGCATGAGAGATCTGAGCTGCGAACCACTAACTACGATCGAGCAGAGCTAGAGTTTTAGTGCGTTTAAGAAATGTAAAAT      GGTGAATTCGAC                            ]
[+] EMBL BM619307             [                     ccggcgAAAACATGGACAGAAATGGTCGGGCCAGTGGTGTCTCATACCCGGACCGTGCACACTCCTGCTTTGGAGTGAACCCAGGAAGTCGCACCGGCGTCTATAAATAGTGTAAATGAATACGCCTTTCTCCTGGAGTAGGCAAAACTCACACAGAATAACAATCGAGGAGAAGGAACGGAACGGCGATACATATCCCAAAAACCG  TTTTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAAACACACCAGAG GTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTT                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX611678             [                                                                                                                                                   TTCCTCCTGGAGGAGGCATAACTCAAACAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCTCAAAAACCG  TTTTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAAACACACCAGAG GTGTGCTTTTGGAACAGATTACTACTACTATTACTACGACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGAACCTAAGCAGAAAC   AAAAAACCCATCTAGCCAAAAACAAAAAAAATCTCCAATTCCTAATACAATTTGCACAGCGCGCTTTTCACTGGGATAAGTCTGTTGTGGTTCTTCGTGTCTTGTACATTGCCAACGCTACCTAGTAGCAAGCGCATGAGAGATCTGAGCTGGGAACCACCAACTACGATCG                                                                                      ]
[-] EMBL BX611677             [                                                                                                                                                    tcCTCCTGGAGGAGGCATAACTCAAACAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCTCAAAAACCG  TTTTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAAACACACCAGAGCGTGTGCTTTTGGAACAGATTACTACTACTATTACTACGACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGAACCTAAGCAGAAAC   AAAAAACCCATCTAGCCAAAAACAAAAAAAATCTCCAATTCCTAATACAATTTGCACAGCGCGCTTTTCACTGGGATAAGTCTGTTGTGGTTCTTCGTGTCTTGTACATTGCCAACGCTACCTAGTAGCAAGCGCATGAGAGATCTGAGCTGGGAACCACCAACTACGATCGAGCAGAGCTAGAGTTTAAGTGCGTTTAAGAAATTTATAATGTTTTCGGTGAATTCGACGTTCGAATAAACAAAAAAAGCACACACA]




>consensus_6524#0
CCGCGGACGCGTGGGCGATAGCGCGACAAAAAATGGACAAAAATGGTCGGTCCAGTGGTG
TCTCAAACCCAGACCGTGCACACTCCTGCTTTGGAGTGAACCTAGCAAGTCGCACCGTCG
TCTAGCAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAACAGAAT
AACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAAACCGTTTTTGGAACAA
AGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAAACACACCAGAGGTG
TGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAG
CAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGAACCTAAGCAGAAACAAAAAACCCATCT
AGCCAAAAACAAAAAAAATCTCCAATTCCTAATACAATTTGCACAGCGCGCTTTTCACTG
GGATAAGTCTGTTGTGGTTCTTCGTGTCTTGTACATTGCCAACGCTACCTAGTAGCAAGC
GCATGAGAGATCTGAGCTGGGAACCACCAACTACGATCGAGCAGAGCTAGAGTTTTAGTG
CGTTTAAGAAATGTAAAATGGTGAATTCGACGTTCGAATAAACAAAAAAAGCACACACA

consensusID : consensus_6524#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [CCGCCCACGCGTCCGCTAGTTTCTAGACGATAGCGCGAAAAAAGTGGACAAAAATGGTCGGTCCAGTGGTGTCTCAAACCCAGACCGTTTGGAGTGAACCTAGCAAGTCGCACCGTCGGCTAGAAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAGCAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAACCCGTTGTTTTGGAACAAAGAACCCGAACTAGTAGTACCGCTGCTACTACTACACATCCCGAAAACACACCAGAGGTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGCACCTAAGCAGAAACCAAAAAAAACCCCATCTAGCCAAAAACAAAAAAATCTCCAATTTCTAATGCGATTTGCACACTGCGCTTTTCACTGGGATAAGTCTTTT]

[+] EMBL BM653625             [CCGCCCACGCGTCCGCTAGTTTCTAGACGATAGCGCGAAAAAAGTGGACAAAAATGGTCGGTCCAGTGGTGTCTCAAACCCAGACCGTTTGGAGTGAACCTAGCAAGTCGCACCGTCGGCTAGAAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAGCAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAACCCGTTGTTTTGGAACAAAGAACCCGAACTAGTAGTACCGCTGCTACTACTACACATCCCGAAAACACACCAGAGGTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGCACCTAAGCAGAAACCAAAAAAAACCCCATCTAGCCAAAAACAAAAAAATCTCCAATTTCTAATGCGATTTGCACACTGCGCTTTTCACTGGGATAAGTCTTTT]




>consensus_6524#1
CCGCCCACGCGTCCGCTAGTTTCTAGACGATAGCGCGAAAAAAGTGGACAAAAATGGTCG
GTCCAGTGGTGTCTCAAACCCAGACCGTTTGGAGTGAACCTAGCAAGTCGCACCGTCGGC
TAGAAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAGCAGAATAA
CAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAACCCGTTGTTTTGGAACAA
AGAACCCGAACTAGTAGTACCGCTGCTACTACTACACATCCCGAAAACACACCAGAGGTG
TGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAG
CAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGCACCTAAGCAGAAACCAAAAAAAACCCC
ATCTAGCCAAAAACAAAAAAATCTCCAATTTCTAATGCGATTTGCACACTGCGCTTTTCA
CTGGGATAAGTCTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6524#0      ------------CCGCGGACGCGTGGGCGATAGCGCGACAAAAAATGGACAAAAATGGTC 48
consensus_6524#1      CCGCCCACGCGTCCGCTAGTTTCTAGACGATAGCGCGA-AAAAAGTGGACAAAAATGGTC 59
                                  ****       * * *********** ***** ***************

consensus_6524#0      GGTCCAGTGGTGTCTCAAACCCAGACCGTGCACACTCCTGCTTTGGAGTGAACCTAGCAA 108
consensus_6524#1      GGTCCAGTGGTGTCTCAAACCCAGACCGT-------------TTGGAGTGAACCTAGCAA 106
                      *****************************             ******************

consensus_6524#0      GTCGCACCGTCGTCTAGCAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAA 168
consensus_6524#1      GTCGCACCGTCGGCTAGAAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAA 166
                      ************ **** ******************************************

consensus_6524#0      CTCAAACAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAAACCG 228
consensus_6524#1      CTCAAGCAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAACCCG 226
                      ***** ************************************************** ***

consensus_6524#0      TT--TTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAA 286
consensus_6524#1      TTGTTTTGGAACAAAGAACCCGAACTAGTAGTACCGCTGCTACTACTACACATCCCGAAA 286
                      **  ****************************** ************ ********* **

consensus_6524#0      ACACACCAGAGGTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCAT 346
consensus_6524#1      ACACACCAGAGGTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCAT 346
                      ************************************************************

consensus_6524#0      CTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGAACCTAAGCAGAAA 406
consensus_6524#1      CTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGCACCTAAGCAGAAA 406
                      ********************************************** *************

consensus_6524#0      CAAAAAA----CCCATCTAGCCAAAAACAAAAAAAATCTCCAATTCCTAATACAATTTGC 462
consensus_6524#1      CCAAAAAAAACCCCATCTAGCCAAAAACAAAAAAA-TCTCCAATTTCTAATGCGATTTGC 465
                      * *****    ************************ ********* ***** * ******

consensus_6524#0      ACAGCGCGCTTTTCACTGGGATAAGTCTGTTGTGGTTCTTCGTGTCTTGTACATTGCCAA 522
consensus_6524#1      ACACTGCGCTTTTCACTGGGATAAGTCTTTT----------------------------- 496
                      ***  *********************** **                             

consensus_6524#0      CGCTACCTAGTAGCAAGCGCATGAGAGATCTGAGCTGGGAACCACCAACTACGATCGAGC 582
consensus_6524#1      ------------------------------------------------------------
                                                                                  

consensus_6524#0      AGAGCTAGAGTTTTAGTGCGTTTAAGAAATGTAAAATGGTGAATTCGACGTTCGAATAAA 642
consensus_6524#1      ------------------------------------------------------------
                                                                                  

consensus_6524#0      CAAAAAAAGCACACACA 659
consensus_6524#1      -----------------