These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1057 fasta sequence [GGCCAGAATTCGGCACGATGGAGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAAACCTTCCTCTTCCCCATACACTTGAAAGCCCGGAACGGGGTTCCACGGAATTTTATTGTTTGGGTGCGGCAATGGGGTTGCGGTACCGGAACGGCCCAAGCAAAATTATTTCCCAATTCGGTGGGAACGGTTAAATTGGAAACACAGGTTGGTTGGCCTTACCATTGGAATTCAACCGGGAATTCCTTGGTATTGGGTTAAGGTGGAAAACGGAATTGAACTCTTTTCCCCAATTTTATCGGCCCGGGCCCACCAATTGGGGTAATTTGGGTTCCGGAATTTGGAAGAGCGGGTTCCTACCAACCGGTTTTTCCAGGCCCGGGAACTTAATTCACAAGTTTTCCAAATTTCGCCCAACCAATTTCCAGTTCCAAAGAACACAGCAGTTGGACGTTTCCCGGTTTTNATTTTTGGGACAAGGGCCGAATTTCCCNCCGAAATTTTCCGGACGAACCCCNAAAAGAGGGGCCATTAACAACGTTTCAAGTTCAAAACCCCAGGTCCGGTTCCCTTTGGGCAGTTTTTGAAGCCGCTTTCGTTCGTTCCAAAAATTTGGTTTTTCCAACTTGGGGGAGATTTTTGGTNACAAAGGGCGAGATANANAAAGGGAATTACCAGGGGAAGGCGGCCATTTTTAAGGGGGTTTCCCATTGGAATTTCCAACTTTCCGGAAAGGCGTTCCTTCCCCAATNGACCGGAGCGTTTTCTGTTACCCCCCTGAANGAAGAGAGAATTAACCATTTCCCCCCTTTGGAAGGGGGAAATTAATTTAGGCGGTTAGGGGTTTAAGGCCGNGNCAAGGGGGAACCGGGGGTCTTGCGCANATTTGGCACTAATTCCCAATTTCCGGGAAGAGGNATTTGGGGGCGCGGGACAAANAGACCTTTTTATAGGTTTNGGGGCCCAAAGTTCCGGG] [+] EMBL BX468866 [GGCCAGAATTCGGCACGATGGAGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAAACCTTCCTCTTCCCCATACACTTGAAAGCCCGGAACGGGGTTCCACGGAATTTTATTGTTTGGGTGCGGCAATGGGGTTGCGGTACCGGAACGGCCCAAGCAAAATTATTTCCCAATTCGGTGGGAACGGTTAAATTGGAAACACAGGTTGGTTGGCCTTACCATTGGAATTCAACCGGGAATTCCTTGGTATTGGGTTAAGGTGGAAAACGGAATTGAACTCTTTTCCCCAATTTTATCGGCCCGGGCCCACCAATTGGGGTAATTTGGGTTCCGGAATTTGGAAGAGCGGGTTCCTACCAACCGGTTTTTCCAGGCCCGGGAACTTAATTCACAAGTTTTCCAAATTTCGCCCAACCAATTTCCAGTTCCAAAGAACACAGCAGTTGGACGTTTCCCGGTTTTNATTTTTGGGACAAGGGCCGAATTTCCCNCCGAAATTTTCCGGACGAACCCCNAAAAGAGGGGCCATTAACAACGTTTCAAGTTCAAAACCCCAGGTCCGGTTCCCTTTGGGCAGTTTTTGAAGCCGCTTTCGTTCGTTCCAAAAATTTGGTTTTTCCAACTTGGGGGAGATTTTTGGTNACAAAGGGCGAGATANANAAAGGGAATTACCAGGGGAAGGCGGCCATTTTTAAGGGGGTTTCCCATTGGAATTTCCAACTTTCCGGAAAGGCGTTCCTTCCCCAATNGACCGGAGCGTTTTCTGTTACCCCCCTGAANGAAGAGAGAATTAACCATTTCCCCCCTTTGGAAGGGGGAAATTAATTTAGGCGGTTAGGGGTTTAAGGCCGNGNCAAGGGGGAACCGGGGGTCTTGCGCANATTTGGCACTAATTCCCAATTTCCGGGAAGAGGNATTTGGGGGCGCGGGACAAANAGACCTTTTTATAGGTTTNGGGGCCCAAAGTTCCGGG] consensusID : consensus_6535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 910 fasta sequence [CCGCCCACGCGTCCGGTTTGCTTGTAGCGTCACGTCTGGCGTTGAGCGAGCTGGTGACAAAACGACCGATAGATAACTTCAACGCAAACCGATGGGTGGAGTGCATCCAATCAACGATTTTGGGTTGCGCTCTGCGTGAAACACACGCCGCGTGCTTAATCAGTGTTCAACAAACCACGGGCAGAGTCGAACGCGGTATTACAAAAAAAGCTGTGAGAATACATGATTAGAAATTCACTACAGAGTTTCGGCCCGA--GCAATTCTAGTCCATCTCATATT-CG-CCCCTAGC----AAATTATTCTGTACAACGATTTACAACGTTGGGATAACAGACGCCACCGTACAATGGCTCACTTAAGAC-CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAA-TTGAACGAAGTTCCCACCCGTATTACAGACGACCTAGCGGCCC--TGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC-GCATGGATGATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTTCCTCTTCCCCATACACTTGAAGCCGACGGTCCACGAT-TTATGTTGGTGCGCAT-GGGTGCGTACGACGCCAGCAAATATTCCATCGTGGACGTAATGAAAGTGTGCTACATGATCACGGATCTGT-TGT-TAGT-GAACGATGACTCTTCCA-TTATCGCCGGNCACATGGTATTGGTCGGATNTGAGGGGTCTACACGTTCGCCGGACTATCACAATTTCAATCCCACGATTCCTCCACGAAAATGACTTCCGGGTATTT] [+] EMBL BM653188 [CCGCCCACGCGTCCGGTTTGCTTGTAGCGTCACGTCTGGCGTTGAGCGAGCTGGTGACAAAACGACCGATAGATAACTTCAACGCAAACCGATGGGTGGAGTGCATCCAATCAACGATTTTGGGTTGCGCTCTGCGTGAAACACACGCCGCGTGCTTAATCAGTGTTCAACAAACCACGGGCAGAGTCGAACGCGGTATTACAAAAAAAGCTGTGAGAATACATGATTAGAAATTCACTACAGAGTTTCGGCCCGA GCAATTCTAGTCCATCTCATATT CG CCCCTAGC AAATTATTCTGTACAACGATTTACAACGTTGGGATAACAGACGCCACCGTACAATGGCTCACTTAAGAC CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAA TTGAACGAAGTTCCCACCCGTATTACAGACGACCTAGCGGCCC TGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC GCATGGATTATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTAC ] [+] EMBL BX623040 [ TCACGTCTGGCGTTGAGCGAGCTGGTGACAAAACGACCGATAGATAACTTCAACGCAAACCGATGGGTGGAGTGCATCCAATCAACGATTTTGGGTTGCGCTCTGCGTGAAACACACGCCGCGTGCTTAATCAGTGTTCAACAAACCACGGGCAGAGTCGAACGCGGTATTACAAAAAAAGCTGTGAGAATACATGATTAGAAATTCACTACGGAGTTTCGGCCCGA GCAATTCTAGTCCATCTCATATT CG CCCCTAGC AAATTATTCTGTACCACGAGTTACAAGGTTGGGATAGCAGACGCCACCGTACAATGGCTCACTTAAGAC CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAA TTGAACGAAGTTCCCACCCGTATTACAGACGACCTAGCGGCCC TGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC GCATGGATGATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTTCCTCTTCCCCATACACTTGAAGCCGACGGTCCACGAT TTATGTTGGTGCGCAT GGGTGCGTACGACGCCAGCAAATATTCCATCGTGGACGTAATGAAAGTGTGCTACATGATCACGGATCTGT TGT TAGT GAACGATGACTCTTCCA TTATCGCCGGNCACATGGTA ] [+] EMBL BM619251 [ ccgCAAACCACGGGCAGAGTCGAACGCGGTATTACAAAAAAAGCTGTGAGAATACATGATTAGAAATTCACTACAGAGTTTCGGCCCGA GCAATTCTAGTCCATCTCATATT CG CCCCTAGC AAATTATTCTGTACAACGATTTACAACGTTGGGATAACAGACGCCACCGTACAATGGCTCACTTAAGAC CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAA TTGAACGAAGTTCCCACCCGTATTACAGACGACCTAGCGGCCC TGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC GCATGGATGATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTTCCTCTTCCCCATACACTTGAAGCCGACGGTCCACGAT TTATGTTGGTGCGCAT GGGTGCGTACGACGCCAGCAAATATTCCAT ] [+] EMBL BX469161 [ gCAGA ATTCGCAGCGATNGNAATTCTAGT CATCTCATATTCCGCCCCCTAGCGTAAAAATTATTCTGTACCACGAGTTACAAGGTTGGGATAGCAGACGCCACCGTACAATGGCTCACTTAAGACACCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAATTTGAACGAAGTTCCCACCCGTATTACAGACGA CTAGCGGGCCTGTGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTCGGCATGGATGATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTTCCTCTTCCCCATACACTTGAAGCCGACGGTCCACGATATTATGTTGGTGCGCATAGGGTGCGTACGACGCCAGCAAATATTCCATCGTGGACGTAATGAAAGTGTGCTACATGATCACGGATCTGTATGTATAGTAGAACGATGACTCTTCCAGTTATCGCCGGGCACATGGTATTGGTCGGATNTGAGGGGTCTACACGTTCGCCGGACTATCACAATTTCAATCCCACGATTCCTCCACGAAAATGACTTCCGGGTATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6535#0 GGCCAGAATTCGGCACGATGGAGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGT 60 consensus_6535#1 ------------------------------------------------------------ consensus_6535#0 GAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAG 120 consensus_6535#1 ------------------------------------------------------------ consensus_6535#0 CTACATGTCGTTCGGTGTCAAACCTTCCTCTTCCCCATACACTTGAAAGCCCGGAACGGG 180 consensus_6535#1 --------------------------------------------------CCGCCCACGC 10 *** * consensus_6535#0 GTTCCACGGAATTTTATTGTTTGGGTGCGGCAATGGGGTTGC-GGTACCGGAACGGCCCA 239 consensus_6535#1 GTCCGGTTTGCTTGTAGCGTC-ACGTCTGGCGTTGAGCGAGCTGGTGACAAAACGACCGA 69 ** * ** ** ** ** *** ** * ** *** * **** ** * consensus_6535#0 AGCAAAATTATTTCCCAATTCGGTGGGAACGGTTAAATTGGAAACACAGGTTGGTTGGCC 299 consensus_6535#1 TAGATAACTTCAACGCAAACCGATGGGTGGAGTGCATCCAATCAACGATTTTGGGTTGCG 129 * ** * * *** ** **** ** * * * **** * ** consensus_6535#0 TTACCATTGGAATTCA-ACCGGGAATTCC-TTGGTATTGGGTTAAGGTGGAAAACGGAAT 357 consensus_6535#1 CTCTGCGTGAAACACACGCCGCGTGCTTAATCAGTGTTCAACAAA--CCACGGGCAGAGT 187 * ** ** ** *** * * * ** ** ** * ** * consensus_6535#0 TGAACTCTTTTCCCCAATTTTATCGGCCCGGGCCCACCAATTGGGGTAATTTGGGTTCCG 417 consensus_6535#1 CGAACGCGGTATTACAAAAAAAGCTGTGAGAATACAT-GATTAGA--AATTCA--CTACA 242 **** * * *** * * * * ** *** * **** * * consensus_6535#0 GAATTTGGAAGAGCGGGTTCCTACCAACCGGTTTTTCCAGGCCCGGGAACTTAATTC--A 475 consensus_6535#1 GAGTTTCGGCCCGAGCAATTCTAGTCCATCTCATATTCGCCCCTAGCAAATTATTCTGTA 302 ** *** * * * * *** * * * ** * ** *** * * consensus_6535#0 CAA-GTTTTCCAAATTTCGCCCAACCAATTTCCAGTTCCAAAGAACACAGCAGTTGGACG 534 consensus_6535#1 CAACGATTTACAACGTTGGGATAACAGACGCCA----CCGTACAATGGCTCACTTAAGAC 358 *** * *** *** ** * *** * * ** * ** ** ** consensus_6535#0 TTTCCCGGTTTTNATTTTTGGGACAAGGGCCGAATTTCCCNCCGAAATTTTCCGGACGAA 594 consensus_6535#1 CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAATTGAACGAAGTTCCCACCCGTA 418 * * ** * *** * ** ** ** ** ** * consensus_6535#0 CCCCNAAAAGAGGGGCCATTAACAACGTTTCAAGTTCAAAACC-CCAGGTCCGGTTCCCT 653 consensus_6535#1 TTACAGACGACCTAGCGGCCCTGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC 478 * * ** ** * ** ** * ** ** * ** consensus_6535#0 T------TGGGCAGTTTTTGAAGCCGCTTTCGTTCGTTCCAAAAATTTGGTTTTTCCAAC 707 consensus_6535#1 GCATGGATGATCAATTTTTGGTGA-ATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAG 537 ** ** ****** * **** * ** * * ** * ** consensus_6535#0 TTGGGGGAGATTTTTGGTNACAAAGGGCGAGATANANAAAGGGAATTACCAGGGGAA--- 764 consensus_6535#1 ACGAAAGAAAAACTCGACAACTATTA-CACGGTGAAGACTGCGA--TACCGGAATTTTTC 594 * ** * * * ** * * * * * * * ** **** * consensus_6535#0 GGCGGCCATTTTTAAGGGGGTTTCCCATTG--GAATTTCCAACTTTCCGGAA--AGGCGT 820 consensus_6535#1 GACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTT 654 * * ** * ** * * ** ** * * * *** * * * consensus_6535#0 TCCTTCCCCAATNGACCGGAG------------CGTTTTCTGTTACCCCCC-TGAANGAA 867 consensus_6535#1 CCTCTTCCCCATACACTTGAAGCCGACGGTCCACGATTTATGTTGGTGCGCATGGGTGCG 714 * * *** ** ** ** ** *** **** * * ** * consensus_6535#0 GAGAGAATTAACCATTTCCCCCCTTTGGAAGGGG-GAAATTAATTTAGGCGGTTAGGGGT 926 consensus_6535#1 TACGACGCCAGCAAATATTCCATCGTGGACGTAATGAAAGTGTGCTACATGATCACGGAT 774 * * * * * ** **** * **** * ** * * * ** * consensus_6535#0 TTAAGGCCGNGNCAAGGGGGAACCGGGGGTCTTGC-GCANATTTGGCACTAATTCCCAAT 985 consensus_6535#1 CTGTTGTTAGTGAACGATGACTCTTCCATTATCGCCGGNCACATGGTATTGGT-CGGATN 833 * * * * * * * * ** * * *** * * * * * consensus_6535#0 TTCCGGGAAGAGGNATTTGGGGGCGCGGGACAAANAGACCTTTTTATAGGTTTNGGGGCC 1045 consensus_6535#1 TGAGGGGTCTACACGTTCGCCGGACTATCACAATTTCAATCCCACGATTCCTCCACGAAA 893 * *** * ** * ** **** * * * consensus_6535#0 CAAAGTTCCGGG----- 1057 consensus_6535#1 ATGACTTCCGGGTATTT 910 * ******* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||