These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1185 fasta sequence [CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATTGGCTG-TGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAA-TTTTCCAATCACAATACCGTCGTGTGACTAGAAGAAGCGGAGAAACGAGGCTGGCACTCAACCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGGGGCCG-G-GGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGGCCAAAGAATCTGCCG-ATCGGGCGTGCATTTTTCTCAACCTGGACGATCGCATAGTCTATGCG-AGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGG-CCACAATAGCAACATGATCGCGCTGAAGGTAC-AGATGGAGAAACGGAAAC-AACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTG-TTTTTTTTATATTATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGCCCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA] [+] EMBL CNS08I0K [CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATTGGCTG TGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAA TTTTCCAATCACAATACCGTCGTGTGACTAGAAGAAGCGGAGAAACGAGGCTGGCACTCAACCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGGGGCCG G GGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGGCCAAAGAATCTGCCG ATCGGGCGTGCATTTTTCTCAACCTGGACGATCGCATAGTCTATGCG AGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGG CCACAATAGCAACATGATCGCGCTGAAGGTACAAGATGGAGAAACGGAAAC AACCGCTACGGCTGCAGATTGAAAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTG TTTTTTTTATATTATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGC ] [+] EMBL CNS08NGO [ GCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATTGGCTGCTGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAATTTTTCCAATCACAATACCGTCGTGTGACTAGAAGAAGCGGACAAACGAGGCTGGCACTCAATCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGGGGCCGCGCGGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGGCCAAAGAGTCTGCCGCATCGGGCGTGCATTTTTCTCAACCTGGACGATCGCATAGTCTATGCGCAGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGGCCCACAATAGCAACATGATCGCGCTGAAGGTAC AGATGGAGAAACGGAAAC AACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGATTATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTGTTTTTTTTTATATTATGATTTTGCATTACTAGTTT ] [-] EMBL CNS08NGP [ TCGCGCTGAAGGTAC AGATGGAGAAACGGAAACAAACCGCTACGGCTGCAAATTGACAAAAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGGATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTG TTTTTTTTATATTATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGCCCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACAC ] [-] EMBL CNS08I0L [ GGATGAAATGCGCAGAGAGCTTTTTTGTTGCCCTG TTTTTTTTATATTATGTTTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACCTGGTTGCCCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA] consensusID : consensus_6536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [NGCCGAGGTTGAGTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAAGTGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGTGCCAAAGAGTCTGCGATCGGGCGTGCATTNTTTCTCAACCTGGACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGTCGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACAACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAG] [+] EMBL AL931199 [NGCCGAGGTTGAGTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAAGTGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGTGCCAAAGAGTCTGCGATCGGGCGTGCATTNTTTCTCAACCTGGACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGTCGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACAACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6536#0 CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATT 60 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 GGCTGTGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAATTTTCCAATC 120 consensus_6536#1 ----------------------------------------------------------NG 2 consensus_6536#0 ACAATACCGTCGTGTGACTAGAAGAAGCGGAG-AAACGAGGCTGGCACTCAACCTAATAC 179 consensus_6536#1 CCGAGGTTGA-GTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATAC 61 * * * ********************* ******************* ******* consensus_6536#0 GATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATT 239 consensus_6536#1 GATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATT 121 ************************************************************ consensus_6536#0 TAGCGCCGCCAACAGTTCGTTCGAAAC-GGAAAACTACGAAATGC-GCATCAAAATCAAG 297 consensus_6536#1 TAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAAG 181 *************************** ***************** ************** consensus_6536#0 TGGGG--CCGGGGCATC-GAAAC-GTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACAT 353 consensus_6536#1 TGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACAT 241 **** * ******** ***** ************************************ consensus_6536#0 TTTTAACCAGCTGGCG-GCCAAAGAATCTGCCGATCGGGCGTGCATTTTT-CTCAACCTG 411 consensus_6536#1 TTTTAACCAGCTGGCGTGCCAAAGAGTCTGC-GATCGGGCGTGCATTNTTTCTCAACCTG 300 **************** ******** ***** *************** ** ********* consensus_6536#0 GACGATC-GCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCGCACCA 470 consensus_6536#1 GACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCA 360 ******* ********************************************** **** consensus_6536#0 GTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACC-GCTCACGGGC 529 consensus_6536#1 GTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGT 420 *********************************************** * ********* consensus_6536#0 CGTCGGCGGCCACAATAGCAACATGATCGCGCTGAAGGTACAGATGGAGAAACGGAAACA 589 consensus_6536#1 CGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACA 480 ***** * * ****************** ******************************* consensus_6536#0 ACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGC 649 consensus_6536#1 ACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGC 540 ************************************************************ consensus_6536#0 CGAAGAGCTCAAGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGG 709 consensus_6536#1 CGAAGAG----------------------------------------------------- 547 ******* consensus_6536#0 CAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTT 769 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 TGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTGTTTTTTTTATATT 829 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 ATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTT 889 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 TGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACG 949 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 GATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGC 1009 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 CCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTAT 1069 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 TCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATT 1129 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 ATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA 1185 consensus_6536#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||