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Anopheles gambiae
cluster # 6536 cluster # 6536       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6536#0 length = 1185 sequences # 4  
consensus_6536#1 length = 547 sequences # 1  

consensusID : consensus_6536#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1185
fasta sequence
                              [CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATTGGCTG-TGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAA-TTTTCCAATCACAATACCGTCGTGTGACTAGAAGAAGCGGAGAAACGAGGCTGGCACTCAACCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGGGGCCG-G-GGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGGCCAAAGAATCTGCCG-ATCGGGCGTGCATTTTTCTCAACCTGGACGATCGCATAGTCTATGCG-AGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGG-CCACAATAGCAACATGATCGCGCTGAAGGTAC-AGATGGAGAAACGGAAAC-AACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTG-TTTTTTTTATATTATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGCCCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA]

[+] EMBL CNS08I0K             [CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATTGGCTG TGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAA TTTTCCAATCACAATACCGTCGTGTGACTAGAAGAAGCGGAGAAACGAGGCTGGCACTCAACCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGGGGCCG G GGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGGCCAAAGAATCTGCCG ATCGGGCGTGCATTTTTCTCAACCTGGACGATCGCATAGTCTATGCG AGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGG CCACAATAGCAACATGATCGCGCTGAAGGTACAAGATGGAGAAACGGAAAC AACCGCTACGGCTGCAGATTGAAAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTG TTTTTTTTATATTATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGC                                                                                                                                                                                                                                                                ]
[+] EMBL CNS08NGO             [        GCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATTGGCTGCTGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAATTTTTCCAATCACAATACCGTCGTGTGACTAGAAGAAGCGGACAAACGAGGCTGGCACTCAATCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGGGGCCGCGCGGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGGCCAAAGAGTCTGCCGCATCGGGCGTGCATTTTTCTCAACCTGGACGATCGCATAGTCTATGCGCAGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGGCCCACAATAGCAACATGATCGCGCTGAAGGTAC AGATGGAGAAACGGAAAC AACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGATTATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTGTTTTTTTTTATATTATGATTTTGCATTACTAGTTT                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CNS08NGP             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCGCGCTGAAGGTAC AGATGGAGAAACGGAAACAAACCGCTACGGCTGCAAATTGACAAAAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGGATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTG TTTTTTTTATATTATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGCCCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACAC          ]
[-] EMBL CNS08I0L             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGATGAAATGCGCAGAGAGCTTTTTTGTTGCCCTG TTTTTTTTATATTATGTTTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACCTGGTTGCCCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA]


>consensus_6536#0 CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATT GGCTGTGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAATTTTCCAATC ACAATACCGTCGTGTGACTAGAAGAAGCGGAGAAACGAGGCTGGCACTCAACCTAATACG ATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTT AGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGG GGCCGGGGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAAC CAGCTGGCGGCCAAAGAATCTGCCGATCGGGCGTGCATTTTTCTCAACCTGGACGATCGC ATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCT GGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGGCC ACAATAGCAACATGATCGCGCTGAAGGTACAGATGGAGAAACGGAAACAACCGCTACGGC TGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCA AGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATA AGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAAT TGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTGTTTTTTTTATATTATGATTTTGCA TTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACA TTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGT CCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGCCCACGAAGCAG GCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGG CATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAA GTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA



consensusID : consensus_6536#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence
                              [NGCCGAGGTTGAGTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAAGTGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGTGCCAAAGAGTCTGCGATCGGGCGTGCATTNTTTCTCAACCTGGACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGTCGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACAACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAG]

[+] EMBL AL931199             [NGCCGAGGTTGAGTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAAGTGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGTGCCAAAGAGTCTGCGATCGGGCGTGCATTNTTTCTCAACCTGGACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGTCGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACAACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAG]


>consensus_6536#1 NGCCGAGGTTGAGTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATA CGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCAT TTAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAA GTGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACA TTTTTAACCAGCTGGCGTGCCAAAGAGTCTGCGATCGGGCGTGCATTNTTTCTCAACCTG GACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCA GTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGT CGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACA ACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGC CGAAGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6536#0      CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATT 60
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      GGCTGTGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAATTTTCCAATC 120
consensus_6536#1      ----------------------------------------------------------NG 2
                                                                                  

consensus_6536#0      ACAATACCGTCGTGTGACTAGAAGAAGCGGAG-AAACGAGGCTGGCACTCAACCTAATAC 179
consensus_6536#1      CCGAGGTTGA-GTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATAC 61
                       * *    *  ********************* ******************* *******

consensus_6536#0      GATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATT 239
consensus_6536#1      GATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATT 121
                      ************************************************************

consensus_6536#0      TAGCGCCGCCAACAGTTCGTTCGAAAC-GGAAAACTACGAAATGC-GCATCAAAATCAAG 297
consensus_6536#1      TAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAAG 181
                      *************************** ***************** **************

consensus_6536#0      TGGGG--CCGGGGCATC-GAAAC-GTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACAT 353
consensus_6536#1      TGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACAT 241
                      ****   * ******** ***** ************************************

consensus_6536#0      TTTTAACCAGCTGGCG-GCCAAAGAATCTGCCGATCGGGCGTGCATTTTT-CTCAACCTG 411
consensus_6536#1      TTTTAACCAGCTGGCGTGCCAAAGAGTCTGC-GATCGGGCGTGCATTNTTTCTCAACCTG 300
                      **************** ******** ***** *************** ** *********

consensus_6536#0      GACGATC-GCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCGCACCA 470
consensus_6536#1      GACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCA 360
                      ******* **********************************************  ****

consensus_6536#0      GTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACC-GCTCACGGGC 529
consensus_6536#1      GTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGT 420
                      *********************************************** * ********* 

consensus_6536#0      CGTCGGCGGCCACAATAGCAACATGATCGCGCTGAAGGTACAGATGGAGAAACGGAAACA 589
consensus_6536#1      CGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACA 480
                      ***** * * ****************** *******************************

consensus_6536#0      ACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGC 649
consensus_6536#1      ACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGC 540
                      ************************************************************

consensus_6536#0      CGAAGAGCTCAAGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGG 709
consensus_6536#1      CGAAGAG----------------------------------------------------- 547
                      *******                                                     

consensus_6536#0      CAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTT 769
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      TGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTGTTTTTTTTATATT 829
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      ATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTT 889
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      TGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACG 949
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      GATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGC 1009
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      CCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTAT 1069
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      TCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATT 1129
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      ATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA 1185
consensus_6536#1      --------------------------------------------------------
                                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)