These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1206 fasta sequence [TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCTGTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAAAACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCAACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAGTTTCGGACGTCGCTCGCGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGCTACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGCGAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTACTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATTTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCGGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTACCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCGAATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTAC-CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAGCAGCACGA-CCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGGTAGCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGCGTGGGCCGTACTGGCTGCTACTACTAG-CAGCACCAGCAACGACAGCAGGCAAATGCCCACGTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATACCTTACTTG] [+] EMBL CNS08GVR [TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCTGTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAAAACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCAACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAGTTTCGGACGTCGCTCGCGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGCTACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGCGAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTACTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATTTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCGGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTACCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCGAATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTTC CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTTCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAGCAGCACGA CCGTTCCGTTCGTGTAGCT ] [-] EMBL CNS08GVQ [ TTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGTTGTGGCGAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTACTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATTTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCGGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTACCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCGAATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTAC CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAGCAGCACGA CCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGGTAGCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGCGTGGGCCGTACTGGCTGCTACTACTAG CAGCACCAGCAACGACAGCAGGCAAATGCCCACGTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATACCTTACTTG] [-] EMBL CNS08QWN [ GATCGAGGCGTGATCGCGCGAGTACGCGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTGCATTGCCGGGGCCAATCATCAGCCAGTCGGCCGAG TGCACAGCAGACCGTGCATCAGCAGCACGACCCGTTCCGTTCGTGTAG TTGCCGCTTGC ] [-] EMBL CNS08GRI [ ggctctACGGTTATTCTTCAGCTTGTAGCTATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGCGTGGGTCGTACTGGCTGCTACTACTAGACAGCACCAGCAACGACAGCAGGCAAATGCCCACGTTGGAAAAGGTTTGCTGCTGCTTCATTCTGGCGATGATCCACGGTTGTATGCGATACCTTACTTG] consensusID : consensus_6537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [GGCAAGAATCGGCACGANGNATTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGCTCGATCACGACGGCCTGGGACGAAACGCAGGAGACGGCTGAAGTGTTGCGGCGTCCGGAGCTACAGCGACTGGCGGGGCGACATCCCGCAGGTCCTGCTGCCAGGCGGGAACGGCCTTCCGGAATGGGGGCTTACCGAAAGGGCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGAAGGCCCCCGGGAGGAAAACCAATTCCTTAACACAGTTCCGAAAGCCGGGGGGTTGGTCCTTGG] [+] EMBL BX468902 [GGCAAGAATCGGCACGANGNATTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGCTCGATCACGACGGCCTGGGACGAAACGCAGGAGACGGCTGAAGTGTTGCGGCGTCCGGAGCTACAGCGACTGGCGGGGCGACATCCCGCAGGTCCTGCTGCCAGGCGGGAACGGCCTTCCGGAATGGGGGCTTACCGAAAGGGCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGAAGGCCCCCGGGAGGAAAACCAATTCCTTAACACAGTTCCGAAAGCCGGGGGGTTGGTCCTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6537#0 TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCT 60 consensus_6537#1 ------------------------------------------------------------ consensus_6537#0 GTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAA 120 consensus_6537#1 ------------------------------------------------------------ consensus_6537#0 AACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCA 180 consensus_6537#1 ------------------------------------------------------------ consensus_6537#0 ACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAG 240 consensus_6537#1 ---------------------------------------GGCAAGAATCGGCACGANGNA 21 ** * * * consensus_6537#0 TTTCGGACGTCGCTCG-CGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGC 299 consensus_6537#1 TTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCA-GTTTGGGCATCTGGACGCTGGTGGA 80 *** * * ** * ** * ** * * ** ** * ** * * consensus_6537#0 TACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGC 359 consensus_6537#1 CAAACACTTCATCAA--CGAGCTGCT-CGGCACGAACCTGTTCTC-CGGTGCGGTGTA-C 135 * * * *** * ** *** * * * ** **** * * ****** * consensus_6537#0 GAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTA 419 consensus_6537#1 GTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCG 195 * * **** ** * * * ** * ** * * * ** consensus_6537#0 CTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACAT 479 consensus_6537#1 GCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATC-TTCGT 254 * * ** * * * * **** * * * * * * ** * * * consensus_6537#0 TTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCC 539 consensus_6537#1 GACGATGCTGATCGGCGGCA--TCCTGGGGTACGTGTTCCGCGAGAAG-GTATCGCAAAC 311 *** * *** * *** ******* *** ** * * ** * * * consensus_6537#0 GGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTA 599 consensus_6537#1 GATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGCTC--GATCACG 369 * **** * * * * *** * *** ** ** ** * * consensus_6537#0 CCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGG 659 consensus_6537#1 ACGGCCTGGGACGAAACGCAGGAG---ACGGCTGAAGTGTTGCGGCGTCCGGAGCTACAG 426 * * * * * *** **** * ** ** *** **** * * * * consensus_6537#0 ACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCC 719 consensus_6537#1 --CGACTGGCGGGGCGACATCCCGCAG-GTCCTGCTGCCAGGCGGGAACGGCCTTCCG-- 481 ** ** ****** ** **** ** ** *** **** * ** consensus_6537#0 GAATACGG-CCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTAC 778 consensus_6537#1 GAATGGGGGCTTACCGAAAGG-GCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGA 540 **** ** * * *** * * ** ** ** * * ** * consensus_6537#0 CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCC 838 consensus_6537#1 AGGCCCCCGGGAGGAA-----AACCA-ATTCCTTAACACAGTTCCGAAAGCCGGGGGGTT 594 * *** * * * ***** * * ** * * * ** *** ** ** consensus_6537#0 AGTGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATC 898 consensus_6537#1 GGTCCTTGG--------------------------------------------------- 603 ** * * * consensus_6537#0 AGCAGCACGACCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGG 958 consensus_6537#1 ------------------------------------------------------------ consensus_6537#0 TAGCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGC 1018 consensus_6537#1 ------------------------------------------------------------ consensus_6537#0 TCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGA 1078 consensus_6537#1 ------------------------------------------------------------ consensus_6537#0 GCGTGGGCCGTACTGGCTGCTACTACTAGCAGCACCAGCAACGACAGCAGGCAAATGCCC 1138 consensus_6537#1 ------------------------------------------------------------ consensus_6537#0 ACGTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATAC 1198 consensus_6537#1 ------------------------------------------------------------ consensus_6537#0 CTTACTTG 1206 consensus_6537#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||