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Anopheles gambiae
cluster # 6537 cluster # 6537       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6537#0 length = 1206 sequences # 4  
consensus_6537#1 length = 603 sequences # 1  

consensusID : consensus_6537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1206
fasta sequence
                              [TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCTGTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAAAACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCAACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAGTTTCGGACGTCGCTCGCGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGCTACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGCGAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTACTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATTTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCGGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTACCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCGAATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTAC-CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAGCAGCACGA-CCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGGTAGCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGCGTGGGCCGTACTGGCTGCTACTACTAG-CAGCACCAGCAACGACAGCAGGCAAATGCCCACGTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATACCTTACTTG]

[+] EMBL CNS08GVR             [TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCTGTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAAAACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCAACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAGTTTCGGACGTCGCTCGCGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGCTACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGCGAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTACTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATTTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCGGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTACCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCGAATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTTC CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTTCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAGCAGCACGA CCGTTCCGTTCGTGTAGCT                                                                                                                                                                                                                                                                                        ]
[-] EMBL CNS08GVQ             [                                                                                                                                                                                                                                                                                                                     TTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGTTGTGGCGAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTACTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATTTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCGGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTACCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCGAATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTAC CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAGCAGCACGA CCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGGTAGCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGCGTGGGCCGTACTGGCTGCTACTACTAG CAGCACCAGCAACGACAGCAGGCAAATGCCCACGTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATACCTTACTTG]
[-] EMBL CNS08QWN             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GATCGAGGCGTGATCGCGCGAGTACGCGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTGCATTGCCGGGGCCAATCATCAGCCAGTCGGCCGAG TGCACAGCAGACCGTGCATCAGCAGCACGACCCGTTCCGTTCGTGTAG TTGCCGCTTGC                                                                                                                                                                                                                                                                              ]
[-] EMBL CNS08GRI             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ggctctACGGTTATTCTTCAGCTTGTAGCTATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGCGTGGGTCGTACTGGCTGCTACTACTAGACAGCACCAGCAACGACAGCAGGCAAATGCCCACGTTGGAAAAGGTTTGCTGCTGCTTCATTCTGGCGATGATCCACGGTTGTATGCGATACCTTACTTG]


>consensus_6537#0 TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCT GTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAA AACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCA ACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAG TTTCGGACGTCGCTCGCGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGCT ACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGCG AGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTAC TCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATT TCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCG GCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTAC CCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGA CAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCG AATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTACCG ATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAG TGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAG CAGCACGACCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGGTA GCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTC CGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGC GTGGGCCGTACTGGCTGCTACTACTAGCAGCACCAGCAACGACAGCAGGCAAATGCCCAC GTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATACCT TACTTG



consensusID : consensus_6537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence
                              [GGCAAGAATCGGCACGANGNATTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGCTCGATCACGACGGCCTGGGACGAAACGCAGGAGACGGCTGAAGTGTTGCGGCGTCCGGAGCTACAGCGACTGGCGGGGCGACATCCCGCAGGTCCTGCTGCCAGGCGGGAACGGCCTTCCGGAATGGGGGCTTACCGAAAGGGCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGAAGGCCCCCGGGAGGAAAACCAATTCCTTAACACAGTTCCGAAAGCCGGGGGGTTGGTCCTTGG]

[+] EMBL BX468902             [GGCAAGAATCGGCACGANGNATTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGCTCGATCACGACGGCCTGGGACGAAACGCAGGAGACGGCTGAAGTGTTGCGGCGTCCGGAGCTACAGCGACTGGCGGGGCGACATCCCGCAGGTCCTGCTGCCAGGCGGGAACGGCCTTCCGGAATGGGGGCTTACCGAAAGGGCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGAAGGCCCCCGGGAGGAAAACCAATTCCTTAACACAGTTCCGAAAGCCGGGGGGTTGGTCCTTGG]


>consensus_6537#1 GGCAAGAATCGGCACGANGNATTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCAGTTTG GGCATCTGGACGCTGGTGGACAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTC TCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTC GGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTG TTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGTACGTGTTCCGCGAGAAG GTATCGCAAACGATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGC TCGATCACGACGGCCTGGGACGAAACGCAGGAGACGGCTGAAGTGTTGCGGCGTCCGGAG CTACAGCGACTGGCGGGGCGACATCCCGCAGGTCCTGCTGCCAGGCGGGAACGGCCTTCC GGAATGGGGGCTTACCGAAAGGGCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGA AGGCCCCCGGGAGGAAAACCAATTCCTTAACACAGTTCCGAAAGCCGGGGGGTTGGTCCT TGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6537#0      TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCT 60
consensus_6537#1      ------------------------------------------------------------
                                                                                  

consensus_6537#0      GTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAA 120
consensus_6537#1      ------------------------------------------------------------
                                                                                  

consensus_6537#0      AACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCA 180
consensus_6537#1      ------------------------------------------------------------
                                                                                  

consensus_6537#0      ACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAG 240
consensus_6537#1      ---------------------------------------GGCAAGAATCGGCACGANGNA 21
                                                               **    *  * *       

consensus_6537#0      TTTCGGACGTCGCTCG-CGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGC 299
consensus_6537#1      TTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCA-GTTTGGGCATCTGGACGCTGGTGGA 80
                      ***   *  *  ** * ** *      **    * * **   ** *    ** *    * 

consensus_6537#0      TACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGC 359
consensus_6537#1      CAAACACTTCATCAA--CGAGCTGCT-CGGCACGAACCTGTTCTC-CGGTGCGGTGTA-C 135
                       *  *    * ***    * ** *** *    * * ** **** *    * ******  *

consensus_6537#0      GAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTA 419
consensus_6537#1      GTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCG 195
                      * *   ****      **    *   *      * **     * **   * * *  **  

consensus_6537#0      CTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACAT 479
consensus_6537#1      GCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATC-TTCGT 254
                        *  *  **  *   * *   *      **** *  * *   * *   *  ** * * *

consensus_6537#0      TTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCC 539
consensus_6537#1      GACGATGCTGATCGGCGGCA--TCCTGGGGTACGTGTTCCGCGAGAAG-GTATCGCAAAC 311
                        ***  *   *** * ***  *******    ***  **    *  * **  *  *  *

consensus_6537#0      GGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTA 599
consensus_6537#1      GATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGCTC--GATCACG 369
                      *   ****       *  *  *  *   *** *   *** **  ** **    * *    

consensus_6537#0      CCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGG 659
consensus_6537#1      ACGGCCTGGGACGAAACGCAGGAG---ACGGCTGAAGTGTTGCGGCGTCCGGAGCTACAG 426
                       * * *  * * ***  ****  *   **   **      ***  ****  *  *  * *

consensus_6537#0      ACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCC 719
consensus_6537#1      --CGACTGGCGGGGCGACATCCCGCAG-GTCCTGCTGCCAGGCGGGAACGGCCTTCCG-- 481
                         **   ** ******  **  ****  **    **   ***  ****   *   **  

consensus_6537#0      GAATACGG-CCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTAC 778
consensus_6537#1      GAATGGGGGCTTACCGAAAGG-GCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGA 540
                      ****  ** *   * *** *  *  **   **      **   *      *  ** *   

consensus_6537#0      CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCC 838
consensus_6537#1      AGGCCCCCGGGAGGAA-----AACCA-ATTCCTTAACACAGTTCCGAAAGCCGGGGGGTT 594
                       *    *** * * *      ***** *   * ** * *   * **  *** **  **  

consensus_6537#0      AGTGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATC 898
consensus_6537#1      GGTCCTTGG--------------------------------------------------- 603
                       ** * * *                                                   

consensus_6537#0      AGCAGCACGACCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGG 958
consensus_6537#1      ------------------------------------------------------------
                                                                                  

consensus_6537#0      TAGCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGC 1018
consensus_6537#1      ------------------------------------------------------------
                                                                                  

consensus_6537#0      TCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGA 1078
consensus_6537#1      ------------------------------------------------------------
                                                                                  

consensus_6537#0      GCGTGGGCCGTACTGGCTGCTACTACTAGCAGCACCAGCAACGACAGCAGGCAAATGCCC 1138
consensus_6537#1      ------------------------------------------------------------
                                                                                  

consensus_6537#0      ACGTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATAC 1198
consensus_6537#1      ------------------------------------------------------------
                                                                                  

consensus_6537#0      CTTACTTG 1206
consensus_6537#1      --------
                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)