cluster # 6539

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Anopheles gambiae
cluster # 6539 cluster # 6539 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6539#0 length = 1321 sequences # 4

consensus_6539#1 length = 244 sequences # 1

consensusID : consensus_6539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1321
fasta sequence

                              [ATCTTTTTTGGTGC-AGTGCCCACATTCTATTCGTCCCGATGGGTGAACGATACTTTGCCAATCCTTATGATGACTACGACGAAAAAACGCACGGCAAGGAGGAGAATCAGCTGGTCGCCCGGGAGAGCGTGCTGGAGCTTATCAAAAAGTACGTGGACATTATTCAACAAAATGTAAACAGCAAAATGCGCGACGATCTCTATGTGGGAATCGCAGGAATTGCTTTCATGTTTTGGAAACTTGCACAGTCGGACGAAACAAAGCACATGTTTCCATGTTTGGAACTTGCATCGAAATACATTGGCGAACTAAGCACCGCTCGAGGGAAAAACGCGATAAATCGAGCAAAAATGCCGTTGCCTTTCTGTGCGGCGGTTCCGGCATTGCGGCCGTATCTGCAGCAATCGCCAACGAAATGGGAAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAGGGATGTCCACCGTGTGCCAACGTCAAAGGCACCGACGCAGATGAAGTGCTTGTAGGACGGGCCGGTTACCTACATGGAGCGTACTGGTTGAATCAAGCAATCACACCGAAACCAATCGAAAACGAAGCGATTTCCGAAATTTGCCAAACGCTCATAAAGCGTGGCCGCAGTGTAGCACACTCACTGCGCTTAGCGGTCCCTCTGATGTATGAATACCATGAAAAGGCGTATCTCGGTGCGGCTCACGGAGTTTGTGCTATCCTGCACGCTCTGCTAGAATCGCCCTGGTTCGATCGGGACGCAACGGATAGCTTCAGCGGTTCCCCTACCAAACTAGCCGACATCAAAAGTACGATCGATTACGTGCTCACGCTACAGGATGGCGATGGAAACTTTCCTACGCGAATCGATTCGAACCGAATGCTCGTCCACTGGTGCCATGGATGTGGGGGAGCGATTTATCTCTTCGCTAAAGCCTTTCTCACCTTCCGCGAGGACAAGAAAAACGATTGTTGCAGAAAATGCGCCGACGAATTCTGGCGCCACGAACTGTTGCGCAAGGGGCCGGGCATTTGTCACGGGGTAGCCGGTAATGGGTATGCCTTCCTGCTGATGTACCGCTTAACGGGTGAGAAGCGTTATCTGTTTCGGGCGGTGAAGTTTGCTGAATTTCTAAACTCAAGCTCCTTTGCAAGCGTGCTGCTTGCACCCGATCGCCCCTTCAGCTTGTACGAGGGGTTGGCGGGGACGGTTTGCTTTTTGGTCGATCTACTAACTCCCGTGCGGTCCTCGTTTCCATTCATGGATGTGTTTGAACGAAAATGTGTTTAAAAATAAAATTGACCATTTTACGGGTGT]

[+] EMBL CNS09PF2             [ATCTTTTTTGGTGC AGTGCCCACATTCTATTCGTCCCGATGGGTGAACGATACTTTGCCAATCCTTATGATGACTACGACGAAAAAACGCACGGCAAGGAGGAGAATCAGCTGGTCGCCCGGGAGAGCGTGCTGGAGCTTATCAAAAAGTACGTGGACATTATTCAACAAAATGTAAACAGCAAAATGCGCGACGATCTCTATGTGGGAATCGCAGGAATTGCTTTCATGTTTTGGAAACTTGCACAGTCGGACGAAACAAAGCACATGTTTCCATGTTTGGAACTTGCATCGAAATACATTGGCGAACTAAGCACCGCTCGAGGGAAAAACGCGATAAATCGAGCAAAAATGCCGTTGCCTTTCTGTGCGGCGGTTCCGGCATTGCGGCCGTATCTGCAGCAATCGCCAACGAAATGGGAAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAGGGATGTCCACCGTGTGCCAACGTCAAAGGCACCGACGCAGATGAAGTGCTTGTAGGACGGGCCGGTTACCTACATGGAGCGTACTGGTTGAATCAAGCAATCACACCGAAACCAATCGAAAACGAAGCGATTTCCGAAATTTGCCAAACGCTCATAAAGCGTGGCCGCAGTGTAGCACACTCACTGCGCTTAGCGGTCCCTCTGATGTATGAATACCATGAAAAGGCGTATCTCGGTGCGGCTCACGGAGTTTGTGCTATCCTGCACGCTCTGCTAGAATCGCCCTGGTTCGATCGGGACGCAACGGATAGCTTCAGCGGTTCCCCTACCAAACTAGCCGACATCAAAAGTACGATCGATTACGTGCTCACGCTACAGGATGGCGATGGAAACTTTCCTACGCGAATCGATTCGAACCGAATGCTCGTCCACTGGTGCCATGGATGTGGGGGAGCGATTTATCTCTTCGCTAAAGCCTTTCTCACCTTCCGCGAGGACAAGAAAAACGATTGTTGCAGAAAATGCG                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS09ERV             [     TTTTGGTGCAAGTGCCCACATTCTATTCGTCCCGATGGGTGAACGATACTTTGCCAATCCTTATGATGACTACGACGAAAAAACGCACGGCAAGGAGGAGAATCAGCTGGTCGCCCGGGAGAGCGTGCTGGAGCTTATCAAAAAGTACGTGGACATTATTCAACAAAATGTAAACAGCAAAATGCGCGACGATCTCTATGTGGGAATCGCAGGAATTGCTTTCATGTTTTGGAAACTTGCACAGTCGGACGAAACAAAGCACATGTTTCCATGTTTGGAACTTGCATCGAAATACATTGGCGAACTAAGCACCGCTCGAGGGAAAAACGCGATAAATCGAGCAAAAATGCCGTTGCCTTTCTGTGCGGCGGTTCCGGCATTGCGGCCGTATCTGCAGCAATCGCCAACGAAATGGGAAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAGGGATGTCCACCGTGTGCCAACGTCAAAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CNS09PF3             [                                                                                                                                                                                                                                                                                                                                                                                                                   AATCGCCAACGAAATGGGAAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAGGGATGTCCACCGTGTGCCAACGTTAAAGGCACCCACGCAGATGAAGTGCTTGTAGGACGGGCCGGTTACCTACATGGGGCGTACTGGTTGAATCAAGAAATAACACCGAAACCAATCGAAAACGAAGCGATTTCCGAAATTTGCCAAACGCTCATAAAGCGTGGCCGCAGTGTGGAAAACTTACTGCGCTTAGCGGTCCCTCTGATGTATGAATACCATGAAAAGGCGTTTCTCGGTGCGGCTCACGGAGTTTGTGCTATCCTGCACGCTCTGCTAAAATCGCCCTGGTTCGATCGGGACGCAACGGATAGCTTCAGCGGTTCCCCTACCAAACTAGCCGACATCAAAAGTACGATCGATTACGGGCTCACGCTACAGGATGGCGATGGAAACTTTCCTACGCGAATCGATTCGAACCGAATGCTCGTCCACTGGTGCCATGGATGTGGGGGAGCGATTTATCTCTTCGCTAAAGCCTTTCTCACCTTCCGCGAGGACAAGTTTCTCGATTGTTGCAGAAAATGCGCCGACGAATTCTGGCGCCACGAACTGTTGCGCAAGGGGCCGGGCATTTGTCACGGGGTAGCCGGTAATGGGTATGCCTTCCTGCTGATGTACCGCTTAACGGGTGAGAAGCGTTATCTGTTTCGGGCGGTGAAGTTTGCTGAATTTCTAAACTCAAGCTCCTTTGCAAGCGTGCTGCTTGCACCCGATCGCCCCTTCAGCTTGTACGAGGGGTTGGCGGGGACGGTTTGCTTTTTGGTCGATCTACTAACTCCCGTGCGGTCCTCGTTTCCATTCATGGATGTGTTTGAACGAAAATGTGTTTAAAAATAAAATTGACCATTTTACGGGTGT]
[-] EMBL CNS09ERW             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ctTTAACGGGTGAGAAGCGTTTTCTTTATCGGGCGGTGAAGTTTGCTGAATTTCTAAACTCAAGCTCCTTTGCAAGCGTGCTGCTTGCACCCGATCGCCCCTTCAGCTTGTACGAGGGGTTGGCGGGGACGGTTTGCTTTTTGGTCGATCTACTCACTCCCGTGCGGTCCTCGTTTCCATTCATGGATGTGTTTGAACGAAAATGTGTTTAAAAATAAAATTGACCATTTg        ]




>consensus_6539#0
ATCTTTTTTGGTGCAGTGCCCACATTCTATTCGTCCCGATGGGTGAACGATACTTTGCCA
ATCCTTATGATGACTACGACGAAAAAACGCACGGCAAGGAGGAGAATCAGCTGGTCGCCC
GGGAGAGCGTGCTGGAGCTTATCAAAAAGTACGTGGACATTATTCAACAAAATGTAAACA
GCAAAATGCGCGACGATCTCTATGTGGGAATCGCAGGAATTGCTTTCATGTTTTGGAAAC
TTGCACAGTCGGACGAAACAAAGCACATGTTTCCATGTTTGGAACTTGCATCGAAATACA
TTGGCGAACTAAGCACCGCTCGAGGGAAAAACGCGATAAATCGAGCAAAAATGCCGTTGC
CTTTCTGTGCGGCGGTTCCGGCATTGCGGCCGTATCTGCAGCAATCGCCAACGAAATGGG
AAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAGGGATGTCCACCGTGTGC
CAACGTCAAAGGCACCGACGCAGATGAAGTGCTTGTAGGACGGGCCGGTTACCTACATGG
AGCGTACTGGTTGAATCAAGCAATCACACCGAAACCAATCGAAAACGAAGCGATTTCCGA
AATTTGCCAAACGCTCATAAAGCGTGGCCGCAGTGTAGCACACTCACTGCGCTTAGCGGT
CCCTCTGATGTATGAATACCATGAAAAGGCGTATCTCGGTGCGGCTCACGGAGTTTGTGC
TATCCTGCACGCTCTGCTAGAATCGCCCTGGTTCGATCGGGACGCAACGGATAGCTTCAG
CGGTTCCCCTACCAAACTAGCCGACATCAAAAGTACGATCGATTACGTGCTCACGCTACA
GGATGGCGATGGAAACTTTCCTACGCGAATCGATTCGAACCGAATGCTCGTCCACTGGTG
CCATGGATGTGGGGGAGCGATTTATCTCTTCGCTAAAGCCTTTCTCACCTTCCGCGAGGA
CAAGAAAAACGATTGTTGCAGAAAATGCGCCGACGAATTCTGGCGCCACGAACTGTTGCG
CAAGGGGCCGGGCATTTGTCACGGGGTAGCCGGTAATGGGTATGCCTTCCTGCTGATGTA
CCGCTTAACGGGTGAGAAGCGTTATCTGTTTCGGGCGGTGAAGTTTGCTGAATTTCTAAA
CTCAAGCTCCTTTGCAAGCGTGCTGCTTGCACCCGATCGCCCCTTCAGCTTGTACGAGGG
GTTGGCGGGGACGGTTTGCTTTTTGGTCGATCTACTAACTCCCGTGCGGTCCTCGTTTCC
ATTCATGGATGTGTTTGAACGAAAATGTGTTTAAAAATAAAATTGACCATTTTACGGGTG
T

consensusID : consensus_6539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [AGCAGATTCNCGGNCAGCAGGTGTAACAGATTTGGAAAGCTTCCTACAGCGGATGTTCACCGTGTGCCAACGTCAAAGTGCACCGACGCAGATGAAGTGCTTGTAGTGACGGGCCGGTTACCTACACGGGAGGCGTACTGGTTTGAATCAAGCAATCACACCGAAAGCAATCGAAAACGAAGCAATTTCCNGAAATATGTTCAACACGCTCCTAAAACGTGGTCGCCAGTGTTGTACAACTCCA]

[+] EMBL AL697027             [AGCAGATTCNCGGNCAGCAGGTGTAACAGATTTGGAAAGCTTCCTACAGCGGATGTTCACCGTGTGCCAACGTCAAAGTGCACCGACGCAGATGAAGTGCTTGTAGTGACGGGCCGGTTACCTACACGGGAGGCGTACTGGTTTGAATCAAGCAATCACACCGAAAGCAATCGAAAACGAAGCAATTTCCNGAAATATGTTCAACACGCTCCTAAAACGTGGTCGCCAGTGTTGTACAACTCCA]




>consensus_6539#1
AGCAGATTCNCGGNCAGCAGGTGTAACAGATTTGGAAAGCTTCCTACAGCGGATGTTCAC
CGTGTGCCAACGTCAAAGTGCACCGACGCAGATGAAGTGCTTGTAGTGACGGGCCGGTTA
CCTACACGGGAGGCGTACTGGTTTGAATCAAGCAATCACACCGAAAGCAATCGAAAACGA
AGCAATTTCCNGAAATATGTTCAACACGCTCCTAAAACGTGGTCGCCAGTGTTGTACAAC
TCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6539#0      ATCTTTTTTGGTGCAGTGCCCACATTCTATTCGTCCCGATGGGTGAACGATACTTTGCCA 60
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      ATCCTTATGATGACTACGACGAAAAAACGCACGGCAAGGAGGAGAATCAGCTGGTCGCCC 120
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      GGGAGAGCGTGCTGGAGCTTATCAAAAAGTACGTGGACATTATTCAACAAAATGTAAACA 180
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      GCAAAATGCGCGACGATCTCTATGTGGGAATCGCAGGAATTGCTTTCATGTTTTGGAAAC 240
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      TTGCACAGTCGGACGAAACAAAGCACATGTTTCCATGTTTGGAACTTGCATCGAAATACA 300
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      TTGGCGAACTAAGCACCGCTCGAGGGAAAAACGCGATAAATCGAGCAAAAATGCCGTTGC 360
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      CTTTCTGTGCGGCGGTTCCGGCATTGCGGCCGTATCTGCAGCAATCGCCAACGAAATGGG 420
consensus_6539#1      ------------------------------------------------------AGCAGA 6
                                                                            *   * 

consensus_6539#0      AAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAG-GGATGTCCACCGTGTG 479
consensus_6539#1      TTCNCGGNCAGCAGGTGTAACAGATTTGGAAAGCTTCCTACAGCGGATGTTCACCGTGTG 66
                          * *  **     *  *  ********************* ****** *********

consensus_6539#0      CCAACGTCAAAG-GCACCGACGCAGATGAAGTGCTTGTAG-GACGGGCCGGTTACCTACA 537
consensus_6539#1      CCAACGTCAAAGTGCACCGACGCAGATGAAGTGCTTGTAGTGACGGGCCGGTTACCTACA 126
                      ************ *************************** *******************

consensus_6539#0      TGGA--GCGTACTGGTT-GAATCAAGCAATCACACCGAAACCAATCGAAAACGAAGCGAT 594
consensus_6539#1      CGGGAGGCGTACTGGTTTGAATCAAGCAATCACACCGAAAGCAATCGAAAACGAAGCAAT 186
                       **   *********** ********************** **************** **

consensus_6539#0      TTCCGAAATT---TGCCAAACGCTCATAAAGCGTGGCCGC-AGTGTAGCACACTCACTGC 650
consensus_6539#1      TTCCNGAAATATGTTCAACACGCTCCTAAAACGTGGTCGCCAGTGTTGTACAACTCCA-- 244
                      ****  ** *   * * * ****** **** ***** *** ***** * ***    *   

consensus_6539#0      GCTTAGCGGTCCCTCTGATGTATGAATACCATGAAAAGGCGTATCTCGGTGCGGCTCACG 710
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      GAGTTTGTGCTATCCTGCACGCTCTGCTAGAATCGCCCTGGTTCGATCGGGACGCAACGG 770
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      ATAGCTTCAGCGGTTCCCCTACCAAACTAGCCGACATCAAAAGTACGATCGATTACGTGC 830
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      TCACGCTACAGGATGGCGATGGAAACTTTCCTACGCGAATCGATTCGAACCGAATGCTCG 890
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      TCCACTGGTGCCATGGATGTGGGGGAGCGATTTATCTCTTCGCTAAAGCCTTTCTCACCT 950
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      TCCGCGAGGACAAGAAAAACGATTGTTGCAGAAAATGCGCCGACGAATTCTGGCGCCACG 1010
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      AACTGTTGCGCAAGGGGCCGGGCATTTGTCACGGGGTAGCCGGTAATGGGTATGCCTTCC 1070
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      TGCTGATGTACCGCTTAACGGGTGAGAAGCGTTATCTGTTTCGGGCGGTGAAGTTTGCTG 1130
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      AATTTCTAAACTCAAGCTCCTTTGCAAGCGTGCTGCTTGCACCCGATCGCCCCTTCAGCT 1190
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      TGTACGAGGGGTTGGCGGGGACGGTTTGCTTTTTGGTCGATCTACTAACTCCCGTGCGGT 1250
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      CCTCGTTTCCATTCATGGATGTGTTTGAACGAAAATGTGTTTAAAAATAAAATTGACCAT 1310
consensus_6539#1      ------------------------------------------------------------
                                                                                  

consensus_6539#0      TTTACGGGTGT 1321
consensus_6539#1      -----------