These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1321 fasta sequence [ATCTTTTTTGGTGC-AGTGCCCACATTCTATTCGTCCCGATGGGTGAACGATACTTTGCCAATCCTTATGATGACTACGACGAAAAAACGCACGGCAAGGAGGAGAATCAGCTGGTCGCCCGGGAGAGCGTGCTGGAGCTTATCAAAAAGTACGTGGACATTATTCAACAAAATGTAAACAGCAAAATGCGCGACGATCTCTATGTGGGAATCGCAGGAATTGCTTTCATGTTTTGGAAACTTGCACAGTCGGACGAAACAAAGCACATGTTTCCATGTTTGGAACTTGCATCGAAATACATTGGCGAACTAAGCACCGCTCGAGGGAAAAACGCGATAAATCGAGCAAAAATGCCGTTGCCTTTCTGTGCGGCGGTTCCGGCATTGCGGCCGTATCTGCAGCAATCGCCAACGAAATGGGAAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAGGGATGTCCACCGTGTGCCAACGTCAAAGGCACCGACGCAGATGAAGTGCTTGTAGGACGGGCCGGTTACCTACATGGAGCGTACTGGTTGAATCAAGCAATCACACCGAAACCAATCGAAAACGAAGCGATTTCCGAAATTTGCCAAACGCTCATAAAGCGTGGCCGCAGTGTAGCACACTCACTGCGCTTAGCGGTCCCTCTGATGTATGAATACCATGAAAAGGCGTATCTCGGTGCGGCTCACGGAGTTTGTGCTATCCTGCACGCTCTGCTAGAATCGCCCTGGTTCGATCGGGACGCAACGGATAGCTTCAGCGGTTCCCCTACCAAACTAGCCGACATCAAAAGTACGATCGATTACGTGCTCACGCTACAGGATGGCGATGGAAACTTTCCTACGCGAATCGATTCGAACCGAATGCTCGTCCACTGGTGCCATGGATGTGGGGGAGCGATTTATCTCTTCGCTAAAGCCTTTCTCACCTTCCGCGAGGACAAGAAAAACGATTGTTGCAGAAAATGCGCCGACGAATTCTGGCGCCACGAACTGTTGCGCAAGGGGCCGGGCATTTGTCACGGGGTAGCCGGTAATGGGTATGCCTTCCTGCTGATGTACCGCTTAACGGGTGAGAAGCGTTATCTGTTTCGGGCGGTGAAGTTTGCTGAATTTCTAAACTCAAGCTCCTTTGCAAGCGTGCTGCTTGCACCCGATCGCCCCTTCAGCTTGTACGAGGGGTTGGCGGGGACGGTTTGCTTTTTGGTCGATCTACTAACTCCCGTGCGGTCCTCGTTTCCATTCATGGATGTGTTTGAACGAAAATGTGTTTAAAAATAAAATTGACCATTTTACGGGTGT] [+] EMBL CNS09PF2 [ATCTTTTTTGGTGC AGTGCCCACATTCTATTCGTCCCGATGGGTGAACGATACTTTGCCAATCCTTATGATGACTACGACGAAAAAACGCACGGCAAGGAGGAGAATCAGCTGGTCGCCCGGGAGAGCGTGCTGGAGCTTATCAAAAAGTACGTGGACATTATTCAACAAAATGTAAACAGCAAAATGCGCGACGATCTCTATGTGGGAATCGCAGGAATTGCTTTCATGTTTTGGAAACTTGCACAGTCGGACGAAACAAAGCACATGTTTCCATGTTTGGAACTTGCATCGAAATACATTGGCGAACTAAGCACCGCTCGAGGGAAAAACGCGATAAATCGAGCAAAAATGCCGTTGCCTTTCTGTGCGGCGGTTCCGGCATTGCGGCCGTATCTGCAGCAATCGCCAACGAAATGGGAAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAGGGATGTCCACCGTGTGCCAACGTCAAAGGCACCGACGCAGATGAAGTGCTTGTAGGACGGGCCGGTTACCTACATGGAGCGTACTGGTTGAATCAAGCAATCACACCGAAACCAATCGAAAACGAAGCGATTTCCGAAATTTGCCAAACGCTCATAAAGCGTGGCCGCAGTGTAGCACACTCACTGCGCTTAGCGGTCCCTCTGATGTATGAATACCATGAAAAGGCGTATCTCGGTGCGGCTCACGGAGTTTGTGCTATCCTGCACGCTCTGCTAGAATCGCCCTGGTTCGATCGGGACGCAACGGATAGCTTCAGCGGTTCCCCTACCAAACTAGCCGACATCAAAAGTACGATCGATTACGTGCTCACGCTACAGGATGGCGATGGAAACTTTCCTACGCGAATCGATTCGAACCGAATGCTCGTCCACTGGTGCCATGGATGTGGGGGAGCGATTTATCTCTTCGCTAAAGCCTTTCTCACCTTCCGCGAGGACAAGAAAAACGATTGTTGCAGAAAATGCG ] [+] EMBL CNS09ERV [ TTTTGGTGCAAGTGCCCACATTCTATTCGTCCCGATGGGTGAACGATACTTTGCCAATCCTTATGATGACTACGACGAAAAAACGCACGGCAAGGAGGAGAATCAGCTGGTCGCCCGGGAGAGCGTGCTGGAGCTTATCAAAAAGTACGTGGACATTATTCAACAAAATGTAAACAGCAAAATGCGCGACGATCTCTATGTGGGAATCGCAGGAATTGCTTTCATGTTTTGGAAACTTGCACAGTCGGACGAAACAAAGCACATGTTTCCATGTTTGGAACTTGCATCGAAATACATTGGCGAACTAAGCACCGCTCGAGGGAAAAACGCGATAAATCGAGCAAAAATGCCGTTGCCTTTCTGTGCGGCGGTTCCGGCATTGCGGCCGTATCTGCAGCAATCGCCAACGAAATGGGAAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAGGGATGTCCACCGTGTGCCAACGTCAAAGGC ] [-] EMBL CNS09PF3 [ AATCGCCAACGAAATGGGAAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAGGGATGTCCACCGTGTGCCAACGTTAAAGGCACCCACGCAGATGAAGTGCTTGTAGGACGGGCCGGTTACCTACATGGGGCGTACTGGTTGAATCAAGAAATAACACCGAAACCAATCGAAAACGAAGCGATTTCCGAAATTTGCCAAACGCTCATAAAGCGTGGCCGCAGTGTGGAAAACTTACTGCGCTTAGCGGTCCCTCTGATGTATGAATACCATGAAAAGGCGTTTCTCGGTGCGGCTCACGGAGTTTGTGCTATCCTGCACGCTCTGCTAAAATCGCCCTGGTTCGATCGGGACGCAACGGATAGCTTCAGCGGTTCCCCTACCAAACTAGCCGACATCAAAAGTACGATCGATTACGGGCTCACGCTACAGGATGGCGATGGAAACTTTCCTACGCGAATCGATTCGAACCGAATGCTCGTCCACTGGTGCCATGGATGTGGGGGAGCGATTTATCTCTTCGCTAAAGCCTTTCTCACCTTCCGCGAGGACAAGTTTCTCGATTGTTGCAGAAAATGCGCCGACGAATTCTGGCGCCACGAACTGTTGCGCAAGGGGCCGGGCATTTGTCACGGGGTAGCCGGTAATGGGTATGCCTTCCTGCTGATGTACCGCTTAACGGGTGAGAAGCGTTATCTGTTTCGGGCGGTGAAGTTTGCTGAATTTCTAAACTCAAGCTCCTTTGCAAGCGTGCTGCTTGCACCCGATCGCCCCTTCAGCTTGTACGAGGGGTTGGCGGGGACGGTTTGCTTTTTGGTCGATCTACTAACTCCCGTGCGGTCCTCGTTTCCATTCATGGATGTGTTTGAACGAAAATGTGTTTAAAAATAAAATTGACCATTTTACGGGTGT] [-] EMBL CNS09ERW [ ctTTAACGGGTGAGAAGCGTTTTCTTTATCGGGCGGTGAAGTTTGCTGAATTTCTAAACTCAAGCTCCTTTGCAAGCGTGCTGCTTGCACCCGATCGCCCCTTCAGCTTGTACGAGGGGTTGGCGGGGACGGTTTGCTTTTTGGTCGATCTACTCACTCCCGTGCGGTCCTCGTTTCCATTCATGGATGTGTTTGAACGAAAATGTGTTTAAAAATAAAATTGACCATTTg ] consensusID : consensus_6539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [AGCAGATTCNCGGNCAGCAGGTGTAACAGATTTGGAAAGCTTCCTACAGCGGATGTTCACCGTGTGCCAACGTCAAAGTGCACCGACGCAGATGAAGTGCTTGTAGTGACGGGCCGGTTACCTACACGGGAGGCGTACTGGTTTGAATCAAGCAATCACACCGAAAGCAATCGAAAACGAAGCAATTTCCNGAAATATGTTCAACACGCTCCTAAAACGTGGTCGCCAGTGTTGTACAACTCCA] [+] EMBL AL697027 [AGCAGATTCNCGGNCAGCAGGTGTAACAGATTTGGAAAGCTTCCTACAGCGGATGTTCACCGTGTGCCAACGTCAAAGTGCACCGACGCAGATGAAGTGCTTGTAGTGACGGGCCGGTTACCTACACGGGAGGCGTACTGGTTTGAATCAAGCAATCACACCGAAAGCAATCGAAAACGAAGCAATTTCCNGAAATATGTTCAACACGCTCCTAAAACGTGGTCGCCAGTGTTGTACAACTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6539#0 ATCTTTTTTGGTGCAGTGCCCACATTCTATTCGTCCCGATGGGTGAACGATACTTTGCCA 60 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 ATCCTTATGATGACTACGACGAAAAAACGCACGGCAAGGAGGAGAATCAGCTGGTCGCCC 120 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 GGGAGAGCGTGCTGGAGCTTATCAAAAAGTACGTGGACATTATTCAACAAAATGTAAACA 180 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 GCAAAATGCGCGACGATCTCTATGTGGGAATCGCAGGAATTGCTTTCATGTTTTGGAAAC 240 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 TTGCACAGTCGGACGAAACAAAGCACATGTTTCCATGTTTGGAACTTGCATCGAAATACA 300 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 TTGGCGAACTAAGCACCGCTCGAGGGAAAAACGCGATAAATCGAGCAAAAATGCCGTTGC 360 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 CTTTCTGTGCGGCGGTTCCGGCATTGCGGCCGTATCTGCAGCAATCGCCAACGAAATGGG 420 consensus_6539#1 ------------------------------------------------------AGCAGA 6 * * consensus_6539#0 AAAACTGCAAGAGATGGAGAACGATTTGGAAAGCTTCCTACAG-GGATGTCCACCGTGTG 479 consensus_6539#1 TTCNCGGNCAGCAGGTGTAACAGATTTGGAAAGCTTCCTACAGCGGATGTTCACCGTGTG 66 * * ** * * ********************* ****** ********* consensus_6539#0 CCAACGTCAAAG-GCACCGACGCAGATGAAGTGCTTGTAG-GACGGGCCGGTTACCTACA 537 consensus_6539#1 CCAACGTCAAAGTGCACCGACGCAGATGAAGTGCTTGTAGTGACGGGCCGGTTACCTACA 126 ************ *************************** ******************* consensus_6539#0 TGGA--GCGTACTGGTT-GAATCAAGCAATCACACCGAAACCAATCGAAAACGAAGCGAT 594 consensus_6539#1 CGGGAGGCGTACTGGTTTGAATCAAGCAATCACACCGAAAGCAATCGAAAACGAAGCAAT 186 ** *********** ********************** **************** ** consensus_6539#0 TTCCGAAATT---TGCCAAACGCTCATAAAGCGTGGCCGC-AGTGTAGCACACTCACTGC 650 consensus_6539#1 TTCCNGAAATATGTTCAACACGCTCCTAAAACGTGGTCGCCAGTGTTGTACAACTCCA-- 244 **** ** * * * * ****** **** ***** *** ***** * *** * consensus_6539#0 GCTTAGCGGTCCCTCTGATGTATGAATACCATGAAAAGGCGTATCTCGGTGCGGCTCACG 710 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 GAGTTTGTGCTATCCTGCACGCTCTGCTAGAATCGCCCTGGTTCGATCGGGACGCAACGG 770 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 ATAGCTTCAGCGGTTCCCCTACCAAACTAGCCGACATCAAAAGTACGATCGATTACGTGC 830 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 TCACGCTACAGGATGGCGATGGAAACTTTCCTACGCGAATCGATTCGAACCGAATGCTCG 890 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 TCCACTGGTGCCATGGATGTGGGGGAGCGATTTATCTCTTCGCTAAAGCCTTTCTCACCT 950 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 TCCGCGAGGACAAGAAAAACGATTGTTGCAGAAAATGCGCCGACGAATTCTGGCGCCACG 1010 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 AACTGTTGCGCAAGGGGCCGGGCATTTGTCACGGGGTAGCCGGTAATGGGTATGCCTTCC 1070 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 TGCTGATGTACCGCTTAACGGGTGAGAAGCGTTATCTGTTTCGGGCGGTGAAGTTTGCTG 1130 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 AATTTCTAAACTCAAGCTCCTTTGCAAGCGTGCTGCTTGCACCCGATCGCCCCTTCAGCT 1190 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 TGTACGAGGGGTTGGCGGGGACGGTTTGCTTTTTGGTCGATCTACTAACTCCCGTGCGGT 1250 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 CCTCGTTTCCATTCATGGATGTGTTTGAACGAAAATGTGTTTAAAAATAAAATTGACCAT 1310 consensus_6539#1 ------------------------------------------------------------ consensus_6539#0 TTTACGGGTGT 1321 consensus_6539#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||