These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2130 fasta sequence [CCGATGGACTTTTAGGAGCATCCGGTTGCGGTAAAACGACACTTCTATCGTGCATAGTAGGACGAAAGCGACTAAACTCAGGAGAAATATGGGTCCTCGGTGGAAAGCCGGGAACGAAAGGATCCGGTGTCCCTGGAGCCCGCGTAGGATACATGCCGCAGGAGATTGCTCTGTACGGTGAATTCTCGATCCGCGAAACGATGATGTACTTCGGCTGGATCTTTGGCATGCACACGTCCGAGATCGTCGAGCGATTACAGTTTCTGCTCAACTTTCTCGATCTGCCATCAGAGTCTCGGTTGGTGAAGAATTTGAGTGGTGGCCAACAGCGTCGTGTATCGTTCGCCGTGGCCCTGATGCACGACCCGGAGCTGCTCATTCTCGACGAACCGACCGTCGGTGTGGATCCACTACTTAGACAAAGTATATGGAATCATCTGGTACACATCACCAAGGCCGGCCAGAAAACCGTCATCATTACGACGCACTACATCGAGGAAGCCCGACAAGCACACACGATCGGTCTGATGCGATCGGGTCGACTGCTGGCGGAAGAGTCACCGAGCTGCTTGCTGTCGATGTATCGCTGCAGCAGCCCTGGAAGGATGTCTTTCCTGAAGCTGTCACGCAAACAGGGCCAAGCCAATGTGGCACCAGCTGAGCTGAACATCAGCAACAACATATCAC-TGTCGGCGCTGGCATTCGGCAACAAAAAGGACAACCCAGTCTACGTCAGCCAGGAAAGTGGTGTCGTCGGACTTAACTTCCACCAGAGCAAGGAGGTGCTCATCAGTGACAGTAACGGATCCACCATTGCTATCAATGGACTCAATGGATCTGCTCCCGGTGCGATCAGTCAAGCGGTCGAGTGCGATAACTGCACCGAATGTTCGGGTTGTTCCAACTTTACGTCGAAGGGAAAGATCCGTGCCCTGCTGGTGAAGAACTTCCTGCGCATGTGGCGAAACGTGGGCGTGATGCTGTTCATCTTCGCCCTGCCCGTCATGCAGGTGATCCTGTTCTGTCTGGCGATCGGGCGTGATCCTACTAACCTGAAAATGGCCATCGTTAACGGTGAGATGAACTCGACCATCGGGGCGGACTGTGCGTTCGATCCGGGGTGCAGCTTTACCAACCTATCCTGTCGCTACCTGAGCCACCTCAACACGACGATCGTGAAGGAATACTACTCGGACCTGGACTCGGCGCTCGGTGCGGTGCGGGACGGCAACGCTTGGGGCGCACTGTACTTTACGGACAACTTTACCGATGCACTTGTGGCGCGTATCGCTCTCGGACGCGATGCTGACGACGAGACGCTGGACCAGTCGGAAATTCGCGTGTGGCTCGACATGTCCAACCAGCAGATCGGCATCATGCTGAACCGCGACCTGCAGGTCGCGTATCGGGAGTTTGCCCAGCAGCTGCTGCGAGTGTGCGACAACAATCCGAAGCTTGGCGATGTTCCGATCCAGTTCAAGGCTCCGATCTACGGTACCAACGATCCGTCGTTCACTGATTTCGTCGCACCAGGAGTCATTTTGACTATCGTGTTCTTCCTGGCCGTGGCACTGACGTCCTCCGCGCTGATCATCGAGCGTACCGAGGGTTTGCTGGATCGATCGTGGGTTGCCGGTGTGACGCCGAGCGAAATCCTGTTCTCGCACGTCATCACCCAGTTCGTGGTGATGTGCGGNCAGACCGCGCTCGTGCTGATCTTCATGATCGTGGTGGTCNGCGTGACGAACAACGGCGAGATCNGCTGGATCGTGGTGCTGACCATCCTGCAGGGTCTGTGCGGTATGTGCTTCGGGTTCGTCATTTCGGCCATCTGCGAGCTGGAGCGCAACGCTATCCAGCTCGCCCTCGGGTCGTTCTACCCGACGCTGCTGCTGTCCGGCGTGATCTGGCCGATCGAGGGCATGCCGCTCGTGCTGCGGTACGTTTCGCTCTGCCTGCCACTGACGCTGGCCACCACGTCCCTCCGCTCGATACTGGCCCGCGGCTGGAGCATAATGGAGCCGGACGTGTATATGGGCTTCGTTTCGACGATCGCCTGGATTGCGCTGTTCCTCGTCATCACGATGCTGGTGCTGAAGTTCAAGCGCGGCTAAGCGGCGCGAGGCAAGC] [+] EMBL BM611282 [CCGATGGACTTTTAGGAGCATCCGGTTGCGGTAAAACGACACTTCTATCGTGCATAGTAGGACGAAAGCGACTAAACTCAGGAGAAATATGGGTCCTCGGTGGAAAGCCGGGAACGAAAGGATCCGGTGTCCCTGGAGCCCGCGTAGGATACATGCCGCAGGAGATTGCTCTGTACGGTGAATTCTCGATCCGCGAAACGATGATGTACTTCGGCTGGATCTTTGGCATGCACACGTCCGAGATCGTCGAGCGATTACAGTTTCTGCTCAACTTTCTCGATCTGCCATCAGAGTCTCGGTTGGTGAAGAATTTGAGTGGTGGCCAACAGCGTCGTGTATCGTTCGCCGTGGCCCTGATGCACGACCCGGAGCTGCTCATTCTCGACGAACCGACCGTCGGTGTGGATCCACTACTTAGACAAAGTATATGGAATCATCTGGTACACATCACCAAGGCCGGCCAGAAAACCGTCATCATTACGACGCACTACATCGAGGAAGCCCGACAAGCACACACGATCGGTCTGATGCGATCGGGTCGACTGCTGGCGGAAGAGTCACCGAGCTGCTTGCTGTCGATGTATCGCTGCAGCAGCCCTGGAAGGATGTCTTTCCTGAAGCTGTCACGCAAACAGGGCCAAGCCAATGTGGCACCAGCTGAGCTGAACATCAGCAACAACATATCACTTGTCG ] [+] EMBL BM631094 [ CCGAGCCAATGTGGCACCAGCTGAGCTGAACATCAGCAACAACATATCAC TGTCGGCGCTGGCATTCGGCAACAAAAAGGACAACCCAGTCTACGTCAGCCAGGAAAGTGGTGTCGTCGGACTTAACTTCCACCAGAGCAAGGAGGTGCTCATCAGTGACAGTAACGGATCCACCATTGCTATCAATGGACTCAATGGATCTGCTCCCGGTGCGATCAGTCAAGCGGTCGAGTGCGATAACTGCACCGAATGTTCGGGTTGTTCCAACTTTACGTCGAAGGGAAAGATCCGTGCCCTGCTGGTGAAGAACTTCCTGCGCATGTGGCGAAACGTGGGCGTGATGCTGTTCATCTTCGCCCTGCCCGTCATGCAGGTGATCCTGTTCTGTCTGGCGATCGGGCGTGATCCTACTAACCTGAAAATGGCCATCGTTAACGGTGAGATGAACTCGACCATCGGGGCGGACTGTGCGTTCGATCCGGGGTGCAGCTTTACCAACCTATCCTGTCGCTACCTGAGC ] [+] EMBL BX624477 [ CTTCGCCCTGCCCGTCATGCAGGTGATCCTGTTCTGTCTGGCGATCGGGCGTGATCCTACCAACCTGAAAATGGCCATCGTTAACGGTGAGATGAACTCGACCATCGGGGCGGACTGTGCGTTCGATCCGGGGTGCAGCTTTACCAACCTATCCTGTCGCTACCTGAGCCACCTCAACACGACGATCGTGAAGGAATACTACTCGGACCTGGACTCGGCGCTCGGTGCGGTGCGGGACGGCAACGCTTGGGGCGCACTGTACTTTACGGACAACTTTACCGATGCACTTGTGGCGCGTATCGCTCTCGGACGCGATGCTGACGACGAGACGCTGGACCAGTCGGAAATTCGCGTGTGGCTCGACATGTCCAACCAGCAGATCGGCATCATGCTGAACCGCGACCTGCAGGTCGCGTATCGGGAGTTTGCCCAGCAGCTGCTGCGAGTGTGCGACAACAATCCGAAGCTTGGCGATGTTCCGATCCAGTTCAAGGCTCCGATCTACGGTACCAACGATCCGTCGTTCACTGATTTCGTCGCACCAGGAGTCATTTTGACTATCGTGTTCTTCCTGGCCGTGGCACTGACGTCCTCCGCGCTGATCATCGAGCGTACCGAGGGTTTGCTGGATCGATCGTGGGTTGCCGGTGTGACGCCGAGCGAAATCCTGTTCTCGCACGTCATCACCCAGTTCGTGGTGATGTGCGGNCAGACCGCGCTCGTGCTGATCTTCATGATCGTGGTGGTCNGCGTGACGAACAACGGCGAGATCNGCTGGATCGTGGTGCTGACCATC ] [+] EMBL BM634678 [ ccgCCAGGAGTCATTTTGACTATCGTGTTCTTCCTGGCCGTGGCACTGACGTCCTCCGCGCTGATCATCGAGCGTACCGAGGGTTTGCTGGATCGATCGTGGGTTGCCGGTGTGACGCCGAGCGAAATCCTGTTCTCGCACGTCATCACCCAGTTCGTGGTGATGTGCGGCCAGACCGCGCTCGTGCTGATCTTCATGATCGTGGTGTTCGGCGTGACGAACAACGGCGAGATCGGCTGGATCGTGGTGCTGACCATCCTGCAGGGTCTGTGCGGTATGTGCTTCGGGTTCGTCATTTCGGCCATCTGCGAGCTGGAGCGCAACGCTATCCAGCTCGCCCTCGGGTCGTTCTACCCGACGCTGCTGCTGTCCGGCGTGATCTGGCCGATCGAGGGCATGCCGCTCGTGCTGCGGTACGTTTCGCTCTGCCTGCCACTGACGCTGGCCACCACGTCCCTCCGCTCGATACTGGCCCGCGGCTGGAGCATAATGGAGCCGGACGTGTATATGGGCTTCGTTTCGACGATCGCCTGGATTGCGCTGTTCCTCGTCATCACGATGCTGGTGCTGAAGTTCAAGCGCGGCTAAGCGGCGCGAGGCAAGC] consensusID : consensus_6541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCGCCCACGCGTCCGGTCCAACCAGCAGATCGGCATCATGCTGAACCGCGACCTGCAGGTCGCGTATCGGGAGTTTGCCCAGCAGCTGCTGCGAGTTTGCGACAACAATCCGAAGCTTGGCGATGTTCCGATCCAGTTCAAGGCTCCGATCTACGGTACCAACGATCCGTCGTTCACTGATTTCGTCGCACCAGGAGTCATTTTGACTATCGTGTTCTTCCTGGCCGTGGCACTGACGTCCTCCGCGCTGATCATCGAGCGTACCGAGGGTTTGCTGGATCGATCGTGGGTTGCCGGTGTGACGCCGAGCGAAATCCTGTTCTCGCACGTCATCACCCAGTTCGTGGTGATGTGCGGCCAGACCGCGCTCGTGCTGATCTTCATGATCGTGGTGTTCGGCGTGACGAACAACGGCGAGATCGGCTGGATCGTGGTGCTGACCATCCTGCAGGGTCTGTGCGGTATGTGCTTCGGGTTCGTCATTTCGGCCATCTGCGAGCTGGAGCGCAACGCTATCCAGCTCGCCCTCGGGTCGTTCTACCCGACGCTGCTGCTGTCCGGCGTGATCTGGCCGATCGAGGGCATGCCGCTCGTGCTGCGGTACGTTTCGCTCTGCCTGCCACTGACGCTGGCCACC] [+] EMBL BM631487 [CCGCCCACGCGTCCGGTCCAACCAGCAGATCGGCATCATGCTGAACCGCGACCTGCAGGTCGCGTATCGGGAGTTTGCCCAGCAGCTGCTGCGAGTTTGCGACAACAATCCGAAGCTTGGCGATGTTCCGATCCAGTTCAAGGCTCCGATCTACGGTACCAACGATCCGTCGTTCACTGATTTCGTCGCACCAGGAGTCATTTTGACTATCGTGTTCTTCCTGGCCGTGGCACTGACGTCCTCCGCGCTGATCATCGAGCGTACCGAGGGTTTGCTGGATCGATCGTGGGTTGCCGGTGTGACGCCGAGCGAAATCCTGTTCTCGCACGTCATCACCCAGTTCGTGGTGATGTGCGGCCAGACCGCGCTCGTGCTGATCTTCATGATCGTGGTGTTCGGCGTGACGAACAACGGCGAGATCGGCTGGATCGTGGTGCTGACCATCCTGCAGGGTCTGTGCGGTATGTGCTTCGGGTTCGTCATTTCGGCCATCTGCGAGCTGGAGCGCAACGCTATCCAGCTCGCCCTCGGGTCGTTCTACCCGACGCTGCTGCTGTCCGGCGTGATCTGGCCGATCGAGGGCATGCCGCTCGTGCTGCGGTACGTTTCGCTCTGCCTGCCACTGACGCTGGCCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6541#0 CCGATGGACTTTTAGGAGCATCCGGTTGCGGTAAAACGACACTTCTATCGTGCATAGTAG 60 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 GACGAAAGCGACTAAACTCAGGAGAAATATGGGTCCTCGGTGGAAAGCCGGGAACGAAAG 120 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 GATCCGGTGTCCCTGGAGCCCGCGTAGGATACATGCCGCAGGAGATTGCTCTGTACGGTG 180 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 AATTCTCGATCCGCGAAACGATGATGTACTTCGGCTGGATCTTTGGCATGCACACGTCCG 240 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 AGATCGTCGAGCGATTACAGTTTCTGCTCAACTTTCTCGATCTGCCATCAGAGTCTCGGT 300 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 TGGTGAAGAATTTGAGTGGTGGCCAACAGCGTCGTGTATCGTTCGCCGTGGCCCTGATGC 360 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 ACGACCCGGAGCTGCTCATTCTCGACGAACCGACCGTCGGTGTGGATCCACTACTTAGAC 420 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 AAAGTATATGGAATCATCTGGTACACATCACCAAGGCCGGCCAGAAAACCGTCATCATTA 480 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 CGACGCACTACATCGAGGAAGCCCGACAAGCACACACGATCGGTCTGATGCGATCGGGTC 540 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 GACTGCTGGCGGAAGAGTCACCGAGCTGCTTGCTGTCGATGTATCGCTGCAGCAGCCCTG 600 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 GAAGGATGTCTTTCCTGAAGCTGTCACGCAAACAGGGCCAAGCCAATGTGGCACCAGCTG 660 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 AGCTGAACATCAGCAACAACATATCACTGTCGGCGCTGGCATTCGGCAACAAAAAGGACA 720 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 ACCCAGTCTACGTCAGCCAGGAAAGTGGTGTCGTCGGACTTAACTTCCACCAGAGCAAGG 780 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 AGGTGCTCATCAGTGACAGTAACGGATCCACCATTGCTATCAATGGACTCAATGGATCTG 840 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 CTCCCGGTGCGATCAGTCAAGCGGTCGAGTGCGATAACTGCACCGAATGTTCGGGTTGTT 900 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 CCAACTTTACGTCGAAGGGAAAGATCCGTGCCCTGCTGGTGAAGAACTTCCTGCGCATGT 960 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 GGCGAAACGTGGGCGTGATGCTGTTCATCTTCGCCCTGCCCGTCATGCAGGTGATCCTGT 1020 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 TCTGTCTGGCGATCGGGCGTGATCCTACTAACCTGAAAATGGCCATCGTTAACGGTGAGA 1080 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 TGAACTCGACCATCGGGGCGGACTGTGCGTTCGATCCGGGGTGCAGCTTTACCAACCTAT 1140 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 CCTGTCGCTACCTGAGCCACCTCAACACGACGATCGTGAAGGAATACTACTCGGACCTGG 1200 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 ACTCGGCGCTCGGTGCGGTGCGGGACGGCAACGCTTGGGGCGCACTGTACTTTACGGACA 1260 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 ACTTTACCGATGCACTTGTGGCGCGTATCGCTCTCGGACGCGATGCTGACGACGAGACGC 1320 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 TGGACCAGTCGGAAATTCGCGTGTGGCTCGACATGTCCAACCAGCAGATCGGCATCATGC 1380 consensus_6541#1 ----------------CCGCCCACG---CGTCCGGTCCAACCAGCAGATCGGCATCATGC 41 *** * ** * ************************** consensus_6541#0 TGAACCGCGACCTGCAGGTCGCGTATCGGGAGTTTGCCCAGCAGCTGCTGCGAGTGTGCG 1440 consensus_6541#1 TGAACCGCGACCTGCAGGTCGCGTATCGGGAGTTTGCCCAGCAGCTGCTGCGAGTTTGCG 101 ******************************************************* **** consensus_6541#0 ACAACAATCCGAAGCTTGGCGATGTTCCGATCCAGTTCAAGGCTCCGATCTACGGTACCA 1500 consensus_6541#1 ACAACAATCCGAAGCTTGGCGATGTTCCGATCCAGTTCAAGGCTCCGATCTACGGTACCA 161 ************************************************************ consensus_6541#0 ACGATCCGTCGTTCACTGATTTCGTCGCACCAGGAGTCATTTTGACTATCGTGTTCTTCC 1560 consensus_6541#1 ACGATCCGTCGTTCACTGATTTCGTCGCACCAGGAGTCATTTTGACTATCGTGTTCTTCC 221 ************************************************************ consensus_6541#0 TGGCCGTGGCACTGACGTCCTCCGCGCTGATCATCGAGCGTACCGAGGGTTTGCTGGATC 1620 consensus_6541#1 TGGCCGTGGCACTGACGTCCTCCGCGCTGATCATCGAGCGTACCGAGGGTTTGCTGGATC 281 ************************************************************ consensus_6541#0 GATCGTGGGTTGCCGGTGTGACGCCGAGCGAAATCCTGTTCTCGCACGTCATCACCCAGT 1680 consensus_6541#1 GATCGTGGGTTGCCGGTGTGACGCCGAGCGAAATCCTGTTCTCGCACGTCATCACCCAGT 341 ************************************************************ consensus_6541#0 TCGTGGTGATGTGCGGNCAGACCGCGCTCGTGCTGATCTTCATGATCGTGGTGGTCNGCG 1740 consensus_6541#1 TCGTGGTGATGTGCGGCCAGACCGCGCTCGTGCTGATCTTCATGATCGTGGTGTTCGGCG 401 **************** ************************************ ** *** consensus_6541#0 TGACGAACAACGGCGAGATCNGCTGGATCGTGGTGCTGACCATCCTGCAGGGTCTGTGCG 1800 consensus_6541#1 TGACGAACAACGGCGAGATCGGCTGGATCGTGGTGCTGACCATCCTGCAGGGTCTGTGCG 461 ******************** *************************************** consensus_6541#0 GTATGTGCTTCGGGTTCGTCATTTCGGCCATCTGCGAGCTGGAGCGCAACGCTATCCAGC 1860 consensus_6541#1 GTATGTGCTTCGGGTTCGTCATTTCGGCCATCTGCGAGCTGGAGCGCAACGCTATCCAGC 521 ************************************************************ consensus_6541#0 TCGCCCTCGGGTCGTTCTACCCGACGCTGCTGCTGTCCGGCGTGATCTGGCCGATCGAGG 1920 consensus_6541#1 TCGCCCTCGGGTCGTTCTACCCGACGCTGCTGCTGTCCGGCGTGATCTGGCCGATCGAGG 581 ************************************************************ consensus_6541#0 GCATGCCGCTCGTGCTGCGGTACGTTTCGCTCTGCCTGCCACTGACGCTGGCCACCACGT 1980 consensus_6541#1 GCATGCCGCTCGTGCTGCGGTACGTTTCGCTCTGCCTGCCACTGACGCTGGCCACC---- 637 ******************************************************** consensus_6541#0 CCCTCCGCTCGATACTGGCCCGCGGCTGGAGCATAATGGAGCCGGACGTGTATATGGGCT 2040 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 TCGTTTCGACGATCGCCTGGATTGCGCTGTTCCTCGTCATCACGATGCTGGTGCTGAAGT 2100 consensus_6541#1 ------------------------------------------------------------ consensus_6541#0 TCAAGCGCGGCTAAGCGGCGCGAGGCAAGC 2130 consensus_6541#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||