These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 996 fasta sequence [CAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTCTGTTCCGGAGTGGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGACTCTCAGCTGGGATACTTACTATCAATTCTGCCATCAGCCGGCGTGGGATACTGAGAATAAAGTGAAGACGCAACTTCGCTGTACCAATCTCGATGGCACACTTGTCCGTTGGGAGGGAACTGTAGTCGATATGGCAATCTCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTTTTGGCCGATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTGTGGCAACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGGTGACCAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCGGAAACTTTACTCAAAGTCTCAACTATTCTGACCGCGTATGGTTCGTCGGCGTGTTGCGCGATTCGGTTCAATCCGGGATCGCGTCATCCGGAAATACCGATCAGCCACATTGGGACACAGTTAGCAGTGGATTTAACTTGAACATGGGAGGACAGGCCGGAAGTTTCGGTGTGCATTCGATGCGATTGGGACGCAAGAACCCGCTAGTCGAACTCCATTCAATCGGA] [+] EMBL BX621217 [CAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTCTGTTCCGGAGTGGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGACTCTCAGCTGGGATACTTACTATCAATTCTGCCATCAGCCGGCGTGGGATACTGAGAATAAAGTGAAGACGCAACTTCGCTGTACCAATCTCGATGGCACACTTGTCCGTTGGGAGGGAACTGTAGTCGATATGGCAATCTCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTTTTGGCCGATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTGTGGCAACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGGTGACCAAACCCGTCGA ] [+] EMBL AL931179 [ caGATCGCCGAGGCTGCATCTACGGTGAA CAATTGAA CGGACTGTGGC ACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGTTGACCAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCGGAAACTTTACTCAAAGTCTCAACTATTCTGACCGCGTATGGTTCGTCGGCGTGTTGCGCGATTCGGTTCAATCCGGGATCGCGTCATCCGGAAATACCGATCAGCCACATTGGGACACAGTTAGCAGTGGATTTAACTTGAACATGGGAGGACAGGCCGGAAGTTTCGGTGTGCATTCGATGCGATTGGGACGCAAGAACCCGCTAGTCGAACTCCATTCAATCGGA] consensusID : consensus_6543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [CCGGCCAAACAAACACGCCGAAATCACAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTGTAAGTTTGTGAAGCTTGGTACTTTTTGTACTCTGCTAAAGAGACGTGAACGTCGTGAAACAAACCAAACAACAGCGAACAAACTAAACGTTTGACCATTCCACAACAGCTGTTCCGGAGTGGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATCGAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGACGTTCGCACTATCCTGGCCATGAGCCCGGGGGAGCGTTCTGCACGCCGGGCAGCGCAAGAACTCTTTGCGA] [+] EMBL BM607265 [CCGGCCAAACAAACACGCCGAAATCACAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTGTAAGTTTGTGAAGCTTGGTACTTTTTGTACTCTGCTAAAGAGACGTGAACGTCGTGAAACAAACCAAACAACAGCGAACAAACTAAACGTTTGACCATTCCACAACAGCTGTTCCGGAGTGGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATCGAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGACGTTCGCACTATCCTGGCCATGAGCCCGGGGGAGCGTTCTGCACGCCGGGCAGCGCAAGAACTCTTTGCGA] consensusID : consensus_6543#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [CCGCCCACGCGTCCGATCGAAAGTAACGGCGGTTCTTCATCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCACAACTTAAAGTACCATTTCTCCGAAGATGGCTGTTCGGAAGTGCATTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCGAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATCGAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGACGTTCGCACTATCCTGGCCATGAGCCCGGGGGAGCGTTCTGCACGCCGGGCAGCGCAAGAACTCTTTGCGAGCCTCTCGAATGGCGAGGAATACGTTACGGCAGCACAACTCGAAAAGCGTATGCGAGAAATTTACAAGATGGACAAAAAGCGCCGACGCACCCAGCCGGATGGTGCCGAAGCAGAAGGAAGCATGGAACACAGCTTGGGTGGAGGTGGTGGATCCGATGGTGGACGAT] [+] EMBL BM618880 [CCGCCCACGCGTCCGATCGAAAGTAACGGCGGTTCTTCATCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCACAACTTAAAGTACCATTTCTCCGAAGATGGCTGTTCGGAAGTGCATTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCGAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATCGAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGACGTTCGCACTATCCTGGCCATGAGCCCGGGGGAGCGTTCTGCACGCCGGGCAGCGCAAGAACTCTTTGCGAGCCTCTCGAATGGCGAGGAATACGTTACGGCAGCACAACTCGAAAAGCGTATGCGAGAAATTTACAAGATGGACAAAAAGCGCCGACGCACCCAGCCGGATGGTGCCGAAGCAGAAGGAAGCATGGAACACAGCTTGGGTGGAGGTGGTGGATCCGATGGTGGACGAT] consensusID : consensus_6543#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [GATCGCCGAGGCTCGATGGCCACTGTCGTTGGGAGGGAACTGTAGTCGATATGGCATATCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTTTGGCCGATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTGTGGCAACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGTTGACCAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCGGAAACTTTACTCAAAGTCTCAACTATTCTGATCGCGTATGGTTCGTCGGCGTCTTGCGCGATTCGGCTCAATCCGGGATCGCGTCATCC] [+] EMBL AL931131 [GATCGCCGAGGCTCGATGGCCACTGTCGTTGGGAGGGAACTGTAGTCGATATGGCATATCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTTTGGCCGATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTGTGGCAACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGTTGACCAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCGGAAACTTTACTCAAAGTCTCAACTATTCTGATCGCGTATGGTTCGTCGGCGTCTTGCGCGATTCGGCTCAATCCGGGATCGCGTCATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6543#0 CAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTCTGTTCCGGAGT 60 consensus_6543#3 ------------------------------------------------------------ consensus_6543#1 ------------------------------------------------------------ consensus_6543#2 ------------------------------------------------------------ consensus_6543#0 GGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGG 120 consensus_6543#3 ------------------------------------------------------------ consensus_6543#1 ------------------------------------------------------------ consensus_6543#2 ------------------------------------------------------------ consensus_6543#0 CCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGA 180 consensus_6543#3 ------------------------------------------------------------ consensus_6543#1 --------------------------CCGGCCAAACAAACACGCCGAAATCACAGCAATA 34 consensus_6543#2 ------------------------------------------------------------ consensus_6543#0 AATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATG 240 consensus_6543#3 ------------------------------------------------------------ consensus_6543#1 TTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTGTAAGTTTGTGAAGCTTGGT 94 consensus_6543#2 ------------------------------------------------------------ consensus_6543#0 GCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCG 300 consensus_6543#3 ------------------------------------------------------------ consensus_6543#1 ACTTTTTGTACTCTGCTAAAGAGACGTGAACGTCGTGAAACAAACCAAACAACAGCGAAC 154 consensus_6543#2 ------------------------------------------------------------ consensus_6543#0 ATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGACTCTCAGCTGGGAT 360 consensus_6543#3 ------------------------------------------------------------ consensus_6543#1 AAACTAAACGTTTGACCATTCCACAACAGCTGTTCCGGAGTGGGAACGTCTGGCGGTACA 214 consensus_6543#2 ------------------------------------------------------------ consensus_6543#0 ACTTACTATCAATTCTGCCATCAGCCGGCGTGGGATACTGAGAATAAAGTGAAGACGCAA 420 consensus_6543#3 ------------------------------------------------------------ consensus_6543#1 TTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCC 274 consensus_6543#2 --------------------------------------------------CCGCCCACGC 10 consensus_6543#0 CTTCGCTGTACCAATCTCGATGGCACACTTGTCCGTTGGGAGGGAACTGTAGTCGATATG 480 consensus_6543#3 ----GATCGCCGAGGCTCGATGGC-CACTG--TCGTTGGGAGGGAACTGTAGTCGATATG 53 consensus_6543#1 -TCCCATCGA-AAGTAACGGCGGTTCTTCG--TCATCGCGCAAGAAATGGAACCTTGAAG 330 consensus_6543#2 GTCCGATCGA-AAGTAACGGCGGTTCTTCA--TCATCGCGCAAGAAATGGAACCTTGAAG 67 * * ** ** * * * * * *** ** * * * * consensus_6543#0 GCAATCTCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTT 540 consensus_6543#3 GCA-TATCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTT 112 consensus_6543#1 ATA-AAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTG 389 consensus_6543#2 ATA-AAAAGTCTCTTCACAACTTAAAGTACCATTTCTCCGAAGATGGCTGTTCGGAAGTG 126 * * ** ** *** * * *** * ***** * * * consensus_6543#0 TTGGCCG-ATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTG--TGGCAAC 597 consensus_6543#3 T-GGCCG-ATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTG--TGGCAAC 168 consensus_6543#1 CAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAAC 449 consensus_6543#2 CATTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAAC 186 * * * * * * ** * ** * ***** * * * **** consensus_6543#0 CTAAATGGATCGGTTGAG-GGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACG 656 consensus_6543#3 CTAAATGGATCGGTTGAG-GGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACG 227 consensus_6543#1 CACGCTCAAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATC 509 consensus_6543#2 CACGCTCGAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATC 246 * * * *** * ** * * * * * ** * * ** *** consensus_6543#0 CACGTGCCATCTCAATA--AATGGAATACCTATG--AGTAC-GAACTGAA-GATACGAAT 710 consensus_6543#3 CACGTGCCATCTCAATA--AATGGAATACCTATG--AGTAC-GAACTGAA-GATACGAAT 281 consensus_6543#1 GAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGAC 569 consensus_6543#2 GAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGAC 306 * *** *** * *** * ** * *** ** *** ** * consensus_6543#0 GTCCACTGGACTGGTGAC-CAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCG 769 consensus_6543#3 GTCCACTGGACTGTTGAC-CAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCG 340 consensus_6543#1 GTTCGCACTATCCTGGCCATGAGCCCGGGGGAGC-GTTCTGCACGCCGGGCA-GCGCAAG 627 consensus_6543#2 GTTCGCACTATCCTGGCCATGAGCCCGGGGGAGC-GTTCTGCACGCCGGGCA-GCGCAAG 364 ** * * * * * * **** * ** ****** * ** *** * * * consensus_6543#0 GAAACTTTACTCAAAGTCTCAACTATTCTGACCGCGT-ATGGTTCGTCGGCGTGTTGCGC 828 consensus_6543#3 GAAACTTTACTCAAAGTCTCAACTATTCTGATCGCGT-ATGGTTCGTCGGCGTCTTGCGC 399 consensus_6543#1 AACTCTTTGCGA------------------------------------------------ 639 consensus_6543#2 AACTCTTTGCGAGCCTCTCGAATGGCGAGGAATACGTTACGGCAGCACAACTCGAAAAGC 424 * **** * consensus_6543#0 GATTCGGTTCAATCCGGGATCGCGTCATCCGGAAATACCGATCAGCCACATTGGGACACA 888 consensus_6543#3 GATTCGGCTCAATCCGGGATCGCGTCATCC------------------------------ 429 consensus_6543#1 ------------------------------------------------------------ consensus_6543#2 GTATGCGAGAAATTTACAAGATGGACAAAAAGCGCCGACGCACCCAGCCGGATGGTGCCG 484 consensus_6543#0 GTTAGCAGTGGATTTAACTTGAACATGGGAGGACAGGCCGGAAGTTTCGGTGTGCATTCG 948 consensus_6543#3 ------------------------------------------------------------ consensus_6543#1 ------------------------------------------------------------ consensus_6543#2 AAGCAGAAGGAAGCATGGAACACAGCTTGGGTGGAGGTGGTGGATCCGATGGTGGACGAT 544 consensus_6543#0 ATGCGATTGGGACGCAAGAACCCGCTAGTCGAACTCCATTCAATCGGA 996 consensus_6543#3 ------------------------------------------------ consensus_6543#1 ------------------------------------------------ consensus_6543#2 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||