These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 837 fasta sequence [CGACATGCTGCCTTGGTTGTAATTTCTCTCTGTTTTTTCTATCTCTCTTTTTAAACCGAATTTCGCGTACCTACGGCTGGGCTCTCATTGGCGCATTGTTTTCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTGTTAATTTCCTCTAAAACCGCTTGCCTTCTTGTTTTCGAACCTGAGCTGAAGATGGATGCAGTGAA------CAACCAAGGATACTGCTTC----CTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGCCACCGGTCAAACAT--ACACACACAAACACACTGAGTGCCTCCAAACAAAACAAAACCTACACCAACCGGGTAGCCGGGTGTGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCT-ATGAAAATTGATCCGCCAACCGGATGTGTGTGTGTGCGATCCCTTTCTCTCAATCTGCCACCCACTCACACATACACACACCGTCAAACCACACCGGTGGTGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGAGAGTATTTCGCCACCGGATGTATTTCGTTCCGGATTTGCCCCGGACGACCGCAAACCTCACACCTGTCCTCCGCCGTCCTTTTGTAGCTCACTAGGGCTACGATGGCAGGGAATGAGAAAGGCGAAAGCCAATGAATATGGATATCCTTCTGGCAAATGATTATAGATCAGAGATCAAATGACGTGCCACATAAACTAGTTGTGTGCACACGGGAGCCGCCATACAAATTCAAACGCTTCCACCGGACGCGTGGGCGGACGCGTGGGCGG] [+] EMBL BX466698 [CGACATGCTGCCTTGGTTGTAATTTCTCTCTGTTTTTTCTATCTCTCTTTTTAAACCGAATTTCGCGTACCTACGGCTGGGCTCTCATTGGCGCATTGTTTTCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTGTTAATTTCCTCTAAAACCGCTTGCCTTCTTGTTTTCGAACCTGAGCTGAAGATGGATGCAGTGAA CAACCAAGGATACTGCTTC CTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGCCACCGGTCAAACAT ACACACACAAACACACTGAGTGCCTCCAAACAAAACAAAACCTACACCAACCGGGTAGCCGGGTGTGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCT ATGAAAATTGATCC ] [-] EMBL BM579201 [ CCTGAGCTGAAGATAGATGCAGTGAACAAGCGCAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGGCACCGGTCAAACATAAACACACACAAACACACTGAGTGCCTCCAAACAAAACAAAACC ACACCAACCGGGTAGCCGGGTGTGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCTAATGAAAATTGATCCGCCAACCGGATGTGTGTGTGTGCGATCCCTTTCTCTCAATCTGCCACCCACTCACACATACACACACCGTCAAACCACACCGGTGGTGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGAGAGTATTTCGCCACCGGATGTATTTCGTTCCGGATTTGCCCCGGACGACCGCAAACCTCACACCTGTCCTCCGCCGTCCTTTTGTAGCTCACTAGGGCTACGATGGCAGGGAATGAGAAAGGCGAAAGCCAATGAATATGGATATCCTTCTGGCAAATGATTATAGATCAGAGATCAAATGACGTGCCACATAAACTAGTTGTGTGCACACGGGAGCCGCCATACAAATTCAAACGCTTCCACCGGACGCGTGGGCGGACGCGTGGGCGG] consensusID : consensus_6555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [GCACACGGCACGACCCCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACATTATTACACCTATTGATGACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCATACACACGTGTCTCATTGTCAACCAGATTTGACCTCAACACGCTTGTTAAATTTCCTTTGAAACCGCTTGCCTTCTTGCCTTGGAACCTGTTCAAGATGGATGCAGTAAACAAGCGCAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGCCACCGGTCAAACATACACACACAAACACACTGAGTCCCTCCAAACAAAACAAAACCACACACCGTAGCCGGGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCTAATGAAAATTGATCCGCCAACCGGATGTGTGCATGTGTGCGATCCCTTTCTCTCAATCTGCCACCCACACACCCACACACACCGTCAAACCACACCGGTGGTGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGTATTTCGCCGCCGGATGTATTTCGTTCCGGATTTGCCCCGGACGGCCGCAAGCCTCACACCTGTCCCGG] [-] EMBL BM650348 [GCACACGGCACGACCCCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACATTATTACACCTATTGATGACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCATACACACGTGTCTCATTGTCAACCAGATTTGACCTCAACACGCTTGTTAAATTTCCTTTGAAACCGCTTGCCTTCTTGCCTTGGAACCTGTTCAAGATGGATGCAGTAAACAAGCGCAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGCCACCGGTCAAACATACACACACAAACACACTGAGTCCCTCCAAACAAAACAAAACCACACACCGTAGCCGGGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCTAATGAAAATTGATCCGCCAACCGGATGTGTGCATGTGTGCGATCCCTTTCTCTCAATCTGCCACCCACACACCCACACACACCGTCAAACCACACCGGTGGTGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGTATTTCGCCGCCGGATGTATTTCGTTCCGGATTTGCCCCGGACGGCCGCAAGCCTCACACCTGTCCCGG] consensusID : consensus_6555#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GCAGAATCGGCACGTTGGAGTGAATGTGAGCGAAAGCCGGCTGTCGTGTGCACCGTCCGATAGTTACTTCTAATTTAAACCCCATTGATTATGATTAATTATTTAATTATGTAAATCCGACAAGGTGCGCTCACGGCCCGCGGTGTACGTGTAAGCCACCGCTTGCAGTGTGCAGTGTGGATAAGGAAAAGGTGTACCAAGGTGATGATGAGTGTATGCGAATACTAACCTTCCATCTGCACGAAACGGTCGTCAAGCTTCCTGGGCAAGTTGCGGTTGATTAGGTGTTAAGTTTTGGCATCACATTCAATTAACTGCCCCAGCCCCAGGCCACGTGAGAGCATGTCCTTGTGAAATACTGGCGAAAATTTGATCCTATTTGTGCTTCTAGTTGCCCTAAATACGCGGACACAAATTAGTGGCGCTTGTTTTCAGGTGTTTATTGTCACGAAATGCTCTTTCATTTCCATTNNNTCTCAGAGAATCCTCTTAGAGAAATACGCCGTTGTTTAAAGAACAGCAAATGCCGGCGTCCGTCCGGTATTTGATATGGTG] [+] EMBL BX468112 [GCAGAATCGGCACGTTGGAGTGAATGTGAGCGAAAGCCGGCTGTCGTGTGCACCGTCCGATAGTTACTTCTAATTTAAACCCCATTGATTATGATTAATTATTTAATTATGTAAATCCGACAAGGTGCGCTCACGGCCCGCGGTGTACGTGTAAGCCACCGCTTGCAGTGTGCAGTGTGGATAAGGAAAAGGTGTACCAAGGTGATGATGAGTGTATGCGAATACTAACCTTCCATCTGCACGAAACGGTCGTCAAGCTTCCTGGGCAAGTTGCGGTTGATTAGGTGTTAAGTTTTGGCATCACATTCAATTAACTGCCCCAGCCCCAGGCCACGTGAGAGCATGTCCTTGTGAAATACTGGCGAAAATTTGATCCTATTTGTGCTTCTAGTTGCCCTAAATACGCGGACACAAATTAGTGGCGCTTGTTTTCAGGTGTTTATTGTCACGAAATGCTCTTTCATTTCCATTNNNTCTCAGAGAATCCTCTTAGAGAAATACGCCGTTGTTTAAAGAACAGCAAATGCCGGCGTCCGTCCGGTATTTGATATGGTG] consensusID : consensus_6555#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [TTGGCTTACACGTACACCGTGGGCCGCGAGCGCACCTTGTCGGATTTACATAATTAAATAATTAATCATAATCAATGGGGTTTAAATTAGAAGTAACTATCGNGACGGTGCACACGGCACGACCCACCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACTTTATTACACCTATTGATGACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCGTGTGTAACTCCGCTGAGCTCCTTCTTCTCTTCTACCTGCCGCTTCTCATTGGCGCATTGTTTTCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTGTTAATTTCCTCTAAAACCGCTTGCCTTCTCCGTTTTCGAACCTGAGCTGAAGATGGATGCAGTGAACAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGCNCAAACCACGATATTAACACGGCCACCGGTCAAACATACACACAC] [-] EMBL BX619474 [TTGGCTTACACGTACACCGTGGGCCGCGAGCGCACCTTGTCGGATTTACATAATTAAATAATTAATCATAATCAATGGGGTTTAAATTAGAAGTAACTATCGNGACGGTGCACACGGCACGACCCACCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACTTTATTACACCTATTGATGACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCGTGTGTAACTCCGCTGAGCTCCTTCTTCTCTTCTACCTGCCGCTTCTCATTGGCGCATTGTTTTCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTGTTAATTTCCTCTAAAACCGCTTGCCTTCTCCGTTTTCGAACCTGAGCTGAAGATGGATGCAGTGAACAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGCNCAAACCACGATATTAACACGGCCACCGGTCAAACATACACACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6555#0 ------------------------------------------------------------ consensus_6555#1 ------------------------------------------------------------ consensus_6555#3 TTGGCTTACACGTACACCGTGGGCCGCGAGCGCACCTTGTCGGATTTACATAATTAAATA 60 consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 ------------------------------------------------------CGACAT 6 consensus_6555#1 -------------------------------------------------GCACACGGCAC 11 consensus_6555#3 ATTAATCATAATCAATGGGGTTTAAATTAGAAGTAACTATCGNGACGGTGCACACGGCAC 120 consensus_6555#2 --GCAGAATCGGCACGTTGGAGTGAATGTGAGCGAAAGCCGGCTGTCGTGTGCACCGTCC 58 * consensus_6555#0 GCT--GC--CTTGGTTGTAATTTCTCTCTGTTTTTTCTATCTCTC----TTTTTAAACCG 58 consensus_6555#1 GAC--CC--CCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACATTATTACACCT 67 consensus_6555#3 GAC--CCACCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACTTTATTACACCT 178 consensus_6555#2 GATAGTTACTTCTAATTTAAACCCCATTGATTATGATTAATTATTTAATTATGTAAATCC 118 * * * * * * * ** * * consensus_6555#0 AATTTCGCGTACCTACGGCTGG--GCTCTCATTGGCG-CATTGT---------------- 99 consensus_6555#1 ATTGATG-ACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATA----------- 115 consensus_6555#3 ATTGATG-ACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCGTG 237 consensus_6555#2 GACAAGGTGCGCTCACGGCCCGCGGTGTACGTGTAAGCCACCGCTTGCA----------G 168 * * * * * * * * * * consensus_6555#0 ----------------------------------------------------------TT 101 consensus_6555#1 ----------------------------------------------------------TG 117 consensus_6555#3 TGTAACTCCGCTGAGCTCCTTCTTCTCTTCTACCTGCCGCTTCTCATTGGCGCATTGTTT 297 consensus_6555#2 TGTGCAGTGTGGATAAGGAAAAGGTGTACCAAGGTGATGATGAGTGTATGCGAATACTAA 228 consensus_6555#0 TCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTG 161 consensus_6555#1 CGCACCATACACACGTGTCTCATTGTCAACCAGATTTGACCTCAA-------CACGCTTG 170 consensus_6555#3 TCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTG 357 consensus_6555#2 CCTTCCATCTGCACGAAACG-GTCGTCAAGCTTCCTGGGCAAGTTGCGGTTGATTAGGTG 287 * * **** * * ***** * * * * ** consensus_6555#0 TTAA-TTTC--CTCTAAAACCGCTTGCCTTCTT-GTTTTCGAACCTGAGCTGAAGATGGA 217 consensus_6555#1 TTAAATTTC--CTTTGAAACCGCTTGCCTTCTT-GCCTTGGAACCT--GTTCAAGATGGA 225 consensus_6555#3 TTAA-TTTC--CTCTAAAACCGCTTGCCTTCTCCGTTTTCGAACCTGAGCTGAAGATGGA 414 consensus_6555#2 TTAAGTTTTGGCATCACATTCAATTAACTGCCCCAGCCCCAGGCCAC-GTGAGAGCATGT 346 **** *** * * * ** ** * ** * ** * consensus_6555#0 TGCAGTGAACAA------CCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTC------- 264 consensus_6555#1 TGCAGTAAACAAGCGCAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCTCTCTCT 285 consensus_6555#3 TGCAGTGAACAA------CCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTC------- 461 consensus_6555#2 CCTTGTGAAATA-----CTGGCGAAAATTTGATCCTATTTGTGCTTCTAGTTGCCCTAAA 401 ** ** * * * * * **** * * * *** * consensus_6555#0 -------------------------------------GCACAGAGGGAAGTA-AAACCAC 286 consensus_6555#1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTA-AAACCAC 344 consensus_6555#3 -------------------------------------GCACAGAGGGAAGCNCAAACCAC 484 consensus_6555#2 TACGCGGACACAAATTAG-TGGCGCTTGTTTTCAGGTGTTTATTGTCACGAA-ATGCTCT 459 * * * * * * * consensus_6555#0 GATATTAACACTGGCCACCGGTCAAACATACACACACAAACACACTGAGTGCCTCCAAAC 346 consensus_6555#1 GATATTAACACTGGCCACCGGTCAAACATACACACACAAACACACTGAGTCCCTCCAAAC 404 consensus_6555#3 GATATTAACAC-GGCCACCGGTCAAACATACACACAC----------------------- 520 consensus_6555#2 TTCATTTCCATTNNNTCTCAGAGAATCCT-CTTAGAGAAATACGCCGTTGTTTAAAGAAC 518 *** ** * * ** * * * * * consensus_6555#0 AAAACAAAACCTACACCAACCGGGTAGCCGGGTGTGTGTGTGTGTTGCCATTACTCATAT 406 consensus_6555#1 AAAACAAAACC-ACAC--ACCG--TAGCCGGGTGTGTGTGT----TGCCATTACTCATAT 455 consensus_6555#3 ------------------------------------------------------------ consensus_6555#2 AGCA-AATGCCGGCGTCCGTCCGGTATTTGATATGGTG---------------------- 555 consensus_6555#0 TGCGCTAATTCCACGCTA-TGAAAATTGATCCGCCAACCGGATGTGTG--TGTGTGCGAT 463 consensus_6555#1 TGCGCTAATTCCACGCTAATGAAAATTGATCCGCCAACCGGATGTGTGCATGTGTGCGAT 515 consensus_6555#3 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 CCCTTTCTCTCAATCTGCCACCCACTCACACATACACACACCGTCAAACCACACCGGTGG 523 consensus_6555#1 CCCTTTCTCTCAATCTGCCACCCA--CACACCCACACACACCGTCAAACCACACCGGTGG 573 consensus_6555#3 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 TGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGAGAGTATTTCGCCACCG 583 consensus_6555#1 TGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGA----GAGTATTTCGCCGCCG 629 consensus_6555#3 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 GATGTATTTCGTTCCGGATTTGCCCCGGACGACCGCAAACCTCACACCTGTCCTCCGCCG 643 consensus_6555#1 GATGTATTTCGTTCCGGATTTGCCCCGGACGGCCGCAAGCCTCACACCTGTCCCGG---- 685 consensus_6555#3 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 TCCTTTTGTAGCTCACTAGGGCTACGATGGCAGGGAATGAGAAAGGCGAAAGCCAATGAA 703 consensus_6555#1 ------------------------------------------------------------ consensus_6555#3 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 TATGGATATCCTTCTGGCAAATGATTATAGATCAGAGATCAAATGACGTGCCACATAAAC 763 consensus_6555#1 ------------------------------------------------------------ consensus_6555#3 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 TAGTTGTGTGCACACGGGAGCCGCCATACAAATTCAAACGCTTCCACCGGACGCGTGGGC 823 consensus_6555#1 ------------------------------------------------------------ consensus_6555#3 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 GGACGCGTGGGCGG 837 consensus_6555#1 -------------- consensus_6555#3 -------------- consensus_6555#2 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||