These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1473 fasta sequence [CCGGCAGAAAGCGTGCGACCGATTGTTTACAAATCGTAGACGACGCAGCCTGTCAAATGTGTGCAGCAAGAGTTGGGTTCGTTTGGTTGAAGTGCAGCAGCAGCAAGCAGGCAAGCGCAAGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGCAATACGTGACTGTGTGGAGCATAGCGCAATAGAGGAGACGTAGGAGCATCGTGTGAGGAAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAAGAGGGCCTGTGTAAACGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGGAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTACGAGCGCAACACCATCTCGACCAACACATTCCAGATCTGGGAAACGACCGTCCGGCTGGCACAGATTCAAACGCTCATCGACAAGGTCTGCCTGGCGACCTGTCCGGACGAGGCGATGATCTGCTTCCTGCAGGAGAGCGACGGCCAATCGATGCTGGACATCATCTCCGACGATGAAGAGGAGGACGACAGCGAACCGCAACAGCTGCGCGGCAAGAACAGCCTCAAGCGCATGATACAGGACATGTACACGCGGCCCCAGATGATCGGCACGGTCAAGATGATCCTGTACCACTGCCTGACGACGCTGGCGGAAAAGCTGACCCAGGACATCAAGTTTCGGTCGGAGAATGCCGAATTCTTCGACGATCTCGAGCTGGTGCTGAGCCGCATGACGGACGANGCGGCCGAAAGTACCAAGCGCGAAATCATGCAGTACTTGTCGATAGCGAAGAAGCGGCTCGCGAAACGGAAACGGGTGCGCGATCAGCACCAGCAACACCAGGAACAACGACAACAACAGCAGCAGCAGCAGCAGCAACAACAAGCGCACCAGGAATCTTCGTCGTCGTCATCTTCTTCTTCCTCTTCCTTCTCGTCCTCATCCTCGACTAGCTCGCCCACGCCGGACAGTAGAATGTTTCCACCCCATGGGTCATAGGGCAGCAAGAATTTGGTTAAATCAAACGGAGCAAGAACCAGCATGCGTTTCTAACATTGTGCTGCAACATGCGGATGCTGCCGGATGGACGGAGGAATCGAGGGATGAAACTAGTTTAATTTTTATTTATATATCTGCTAACTTCCCGGAACACGGGGGCCAC] [+] EMBL BM582919 [CCGGCAGAAAGCGTGCGACCGATTGTTTACAAATCGTAGACGACGCAGCCTGTCAAATGTGTGCAGCAAGAGTTGGGTTCGTTTGGTTGAAGTGCAGCAGCAGCAAGCAGGCAAGCGCAAGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGCAATACGTGACTGTGTGGAGCATAGCGCAATAGAGGAGACGTAGGAGCATCGTGTGAGGAAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAAGAGGGCCTGTGTAAACGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGGAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTAC ] [+] EMBL BX628629 [ AGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGGAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTACGAGCGCAACACCATCTCGACCAACACATTCCAGATCTGGGAAACGACCGTCCGGCTGGCACAGATTCAAACGCTCATCGACAAGGTCTGCCTGGCGACCTGTCCGGACGAGGCGATGATCTGCTTCCTGCAGGAGAGCGACGGCCAATCGATGCTGGACATCATCTCCGACGATGAAGAGGAGGACGACAGCGAACCGCAACAGCTGCGCGGCAAGAACAGCCTCAAGCGCATGATACAGGACATGTACACGCGGCCCCAGATGATCGGCACGGTCAAGATGATCCTGTACCACTGCCTGACGACGCTGGCGGAAAAGCTGACCCAGGACATCAAGTTTCGGTCGGAGAATGCCGAATTCTTCGACGATCTCGAGCTGGTGCTGAGCCGCATGACGGACGANGCGGCCGAAAGTACCAAGCGCGAAATCATGCAGTACTT ] [+] EMBL BX613348 [ CCTGTCCGGACGAGGCGATGATCTGCTTCCTGCAGGAGAGCGACGGCCAATCGATGCTGGACATCATCTCCGACGATGAAGAGGAGGACGACAGCGAACCGCAACAGCTGCGCGGCAAGAACAGCCTCAAGCGCATGATACAGGACATGTACACGCGGCCCCAGATGATCGGCACGGTCAAGATGATCCTGTACCACTGCCTGACGACGCTGGCGGAAAAGCTGACCCAGGACATCAAGTTTCGGTCGGAGAATGCCGAATTCTTCGACGATCTCGAGCTGGTGCTGAGCCGCATGACGGACGAGGCGGCCGAAAGTACCAAGCGCGAAATCATGCAGTACTTGTCGATAGCGAAGAAGCGGCTCGCGAAACGGAAACGGGTGCGCGATCAGCACCAGCAACACCAGGAACAACGACAACAACAGCAGCAGCAGCAGCAGCAACAACAAGCGCACCAGGAATCTTCGTCGTCGTCATCTTCTTCTTCCTCTTCCTTCTCGTCCTCATCCTCGACTAGCTCGCCCACGCCGGACAGTAGAATGTTTCCACCCCATGGGTCATAGGGCAGCAAGAATTTGGTTAAATCAAACGGAGCAAGAACCAGCATGCGTTTCTAACATTGTGCTGCAACATGCGGATGCTGCCGGATGGACGGAGGAATCGAGGGATGAAACTAGTTTAATTTTTATTTATATATCTGCTAACTTCCCGGAACACGGGGGCCAC] consensusID : consensus_6556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [CCCAGGTTAAAGTTGGGTTCGCTTGGTTGCAAGTGCAGCAGCAGCAGCAGGCAAGCGCAAGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGCAATACGTGACTGTGCTGGAGCATAGCGCAACTAGAGGAGACGTAGGAGCATCGTGTGAGGAAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGCTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAACGAGGGCCTGTGTAAACGCAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTNGTTGTGTTCGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCG] [+] EMBL AL933399 [CCCAGGTTAAAGTTGGGTTCGCTTGGTTGCAAGTGCAGCAGCAGCAGCAGGCAAGCGCAAGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGCAATACGTGACTGTGCTGGAGCATAGCGCAACTAGAGGAGACGTAGGAGCATCGTGTGAGGAAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGCTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAACGAGGGCCTGTGTAAACGCAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTNGTTGTGTTCGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCG] consensusID : consensus_6556#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [ATCCCCGAGGTAATCGGATTTGCGCTAGTACTACGTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAAGAGGGCCTGTGTAAACTGAGGCGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATGATTTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGAAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTACGAGCGCAACACCATCTCGAACAACACATTCCAGATCTGGGAAAC] [+] EMBL AL695328 [ATCCCCGAGGTAATCGGATTTGCGCTAGTACTACGTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAAGAGGGCCTGTGTAAACTGAGGCGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATGATTTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGAAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTACGAGCGCAACACCATCTCGAACAACACATTCCAGATCTGGGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6556#0 CCGGCAGAAAGCGTGCGACCGATTGTTTACAAATCGTAGACGACGCAGCCTGTCAAATGT 60 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 GTGCAGCAAGAGTTGGGTTCGTTTGGTTG-AAGTGCAGCAGCAGCAAGCAGGCAAGCGCA 119 consensus_6556#1 CCCAGGTTAAAGTTGGGTTCGCTTGGTTGCAAGTGCAGCAGCAGCA-GCAGGCAAGCGCA 59 consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 AGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGC 179 consensus_6556#1 AGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGC 119 consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 AATACGTGACTGTG-TGGAGCATAGCGCAA-TAGAGGAGACGTAGGAGCATCGTGTGAGG 237 consensus_6556#1 AATACGTGACTGTGCTGGAGCATAGCGCAACTAGAGGAGACGTAGGAGCATCGTGTGAGG 179 consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 AAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACG-TAA 296 consensus_6556#1 AAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGCTAA 239 consensus_6556#2 ------------ATCCCCGAGGT--AATCGGATTTGCG-------CTAGTACTACG-TAA 38 ** **** ************ ** *** **** *** consensus_6556#0 AGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAA-GAGGGCCTGTGTAAACG- 354 consensus_6556#1 AGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAACGAGGGCCTGTGTAAACGC 299 consensus_6556#2 AGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAA-GAGGGCCTGTGTAAACTG 97 ***************************************** **************** consensus_6556#0 -----AAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTG 409 consensus_6556#1 -----AAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTG 354 consensus_6556#2 AGGCGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTG 157 ******************************************************* consensus_6556#0 TCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCT 469 consensus_6556#1 TCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCT 414 consensus_6556#2 TCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATGATTTG--- 214 *************************************************** ***** consensus_6556#0 GCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTT-GAGAGAGA 528 consensus_6556#1 GCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTNGTTGTGTTCGAGAGAGA 474 consensus_6556#2 -------------------CATATAAAGTGTTGGGGTTGTTTTGTTGTGTT-GAGAGAGA 254 *********************** ******** ******** consensus_6556#0 GAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGGAACACCCCCC 588 consensus_6556#1 GAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCG-------------------- 514 consensus_6556#2 GAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGAAACACCCCCC 314 **************************************** consensus_6556#0 AGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGT 648 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 AGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGT 374 consensus_6556#0 ACGAGCGCAACACCATCTCGACCAACACATTCCAGATCTGGGAAACGACCGTCCGGCTGG 708 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ACGAGCGCAACACCATCTCGAACAACACATTCCAGATCTGGGAAAC-------------- 420 consensus_6556#0 CACAGATTCAAACGCTCATCGACAAGGTCTGCCTGGCGACCTGTCCGGACGAGGCGATGA 768 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 TCTGCTTCCTGCAGGAGAGCGACGGCCAATCGATGCTGGACATCATCTCCGACGATGAAG 828 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 AGGAGGACGACAGCGAACCGCAACAGCTGCGCGGCAAGAACAGCCTCAAGCGCATGATAC 888 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 AGGACATGTACACGCGGCCCCAGATGATCGGCACGGTCAAGATGATCCTGTACCACTGCC 948 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 TGACGACGCTGGCGGAAAAGCTGACCCAGGACATCAAGTTTCGGTCGGAGAATGCCGAAT 1008 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 TCTTCGACGATCTCGAGCTGGTGCTGAGCCGCATGACGGACGANGCGGCCGAAAGTACCA 1068 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 AGCGCGAAATCATGCAGTACTTGTCGATAGCGAAGAAGCGGCTCGCGAAACGGAAACGGG 1128 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 TGCGCGATCAGCACCAGCAACACCAGGAACAACGACAACAACAGCAGCAGCAGCAGCAGC 1188 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 AACAACAAGCGCACCAGGAATCTTCGTCGTCGTCATCTTCTTCTTCCTCTTCCTTCTCGT 1248 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 CCTCATCCTCGACTAGCTCGCCCACGCCGGACAGTAGAATGTTTCCACCCCATGGGTCAT 1308 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 AGGGCAGCAAGAATTTGGTTAAATCAAACGGAGCAAGAACCAGCATGCGTTTCTAACATT 1368 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 GTGCTGCAACATGCGGATGCTGCCGGATGGACGGAGGAATCGAGGGATGAAACTAGTTTA 1428 consensus_6556#1 ------------------------------------------------------------ consensus_6556#2 ------------------------------------------------------------ consensus_6556#0 ATTTTTATTTATATATCTGCTAACTTCCCGGAACACGGGGGCCAC 1473 consensus_6556#1 --------------------------------------------- consensus_6556#2 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||