These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1063 fasta sequence [TCTATGTTTTACGATTGAAATCTATCTATTTGCCGAACAGTTTGCCCGTTTGCCGATCCTTAGGATGACAGTTGCTGGGCTGTGTGTAGTATCTCTCGTCGCGGTTTGCACTTGGTTTCCGTTGCGTTTTCATATTACATACATCCTATTATAAGCCTACGCCGCGCAGTGTACACGGTTTTTCCAGCTTGCCGCTGTCTCTGCATATTGCGCATGTGTGTTTAGAGGTGAAATCTTTAACCGTGCATTAACATTTACAACAGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAACGGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAAAAG-AAAAAAAAACGTTCACATTTGTCATAGAAAACATTTCTATAACTTTTTTTTCTCTCCCAATCTTATTGGTTGACACACTTGCTGTCCTTTTACTTGTTTTGAAGGATAGAAAGTATTTTACGTTC--TTTTTTTTAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACATGGTTTTTTGTTTATGTTTATGGCGATTTGTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTCCCTCA-GGGTGTCCGAACTGGTCATTTTTATCAATTTTCCCTCAGTATTTTATCTATGACACGAAATACCCTAGAGAACCTTGTTTGCCAATAGTATGAACGATT---AAAAAAACAATACAGTTCTCGTAGTCGTCGGCACAGGAGAGTGTAAAATGTAAAATAAATTCAACAATTGTACATTACAACAGGCTCTAGTAGTAGTAGTAGCAATAGTGGGAGCAAATGGGGCATGGGGATTCGTTGCACAAGTTATTGCACTCTTAGAAGATAAAAAATGGTTTAAAGAGTTGCCCCGGCATTCTCCAACAGTCGCTTCGACCTATTGCAAACCTGCACTTGGCTGTCCCCTGTATTGCTACTATTTCCCTATAAAAGAAAAACGTTCAGTAAAAAAACGAAATGAATAAAATCTAACAACTACGTACCCTAACCTTGAAAACGTGTCATTCTTTTACTTGCGTAATGT] [+] EMBL CNS08IH0 [TCTATGTTTTACGATTGAAATCTATCTATTTGCCGAACAGTTTGCCCGTTTGCCGATCCTTAGGATGACAGTTGCTGGGCTGTGTGTAGTATCTCTCGTCGCGGTTTGCACTTGGTTTCCGTTGCGTTTTCATATTACATACATCCTATTATAAGCCTACGCCGCGCAGTGTACACGGTTTTTCCAGCTTGCCGCTGTCTCTGCATATTGCGCATGTGTGTTTAGAGGTGAAATCTTTAACCGTGCATTAACATTTACAACAGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAACGGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAAAAGAAAAAAAAAACGTTCACTTTTGTCATAGAAAACATT ] [+] EMBL BX615063 [ TCTATCTATTTGCCGAACAGTTTGCCTTTTTGCCGATCCTTAGGATGACAGTTGCTGGGCTGTGTGTAGTATCTCTCGTCGCGGTTTGCACTTGGTTTCCGTTGCGTTTTCATATTACATACATCCTATTATAAGCCTACGCTGCGCAGTGTACACGGTGTTTCCAGCTTGCCGCTGTCTCTGCATATTGCGCATGTGTGTGTAGAGGTGAAATCTTTAACCGTGCATTAACATTTACAACAGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAACGGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAACAG AAAAAAACGTTCACATTTGTCACATAAACCATTTCTATAACTTTTTTTTCTCTCCCAATCTTATTGGTTGACACACTTGCTGTCCTTTTACTCGTTTTGAAGGATAGAAAGTATTTTACGTTC TTTTTTTTAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACGT GTTTTCTGTTTATGTTTATGGCGATTTGTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTCCCTCA GGGTGTCCGAACTGGTCATTTTTATCAATTTTCCCTCAGTATTTTATCTATGACACGAAATACCCTAGAGAACCTTGTTTGCCAATAGT ] [-] EMBL BX628833 [ AGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAACGGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAAAAG AAAAAAAAACGTTCACATTTGTCATAGAAAACATTTCTATAACTATTTTTCCTCTCCCAATCTTATTGGTTGACACACTTGCTGTCCTTTTACTTGTTTTGAAGGATAGAAAGTATTTTACGTTCTTTTTTTTTTAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACATGGTTTTTTGTTTATGTTTATGGCGATTTGTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTCCCTCA GGGTGTCCGAACTGGTCATTTTTATCAATTTTCCCTCAGTATTTTATCTATGACACGAAATACCCTAGAGAACCTTGTTTGCCAATAGTATGAACGATT AAAAAAACAATACAGTTCTCGTAGTCGTCGGCACAGGAGAGTGTAAAATGTAAAATAAATTCAACAATTGTACATTACAACAGGCTCTAGTAGTAGTAGTAGCAATAGTGGGAGCAAATGGGGCATGGGGATTCGTTGCACAAGTTATTGCACTCTTAGAAGATAA ] [-] EMBL BX626722 [ TCCTTTTACTTGTTTTGAAGGATAGAAAGTATTTTACGTTC TTTTTTTTAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACATGGTTTTTTGTTTATGTTTATGGCGATTTTTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTCCCTCAGGGGTGTCCGAACTGGTCATTTTCATCAATTTTCCCTCAGTATTTTATCTATGACACGAAATACCCTAGAAAACCTTATTGGCCAATAGTATGAACGATTAAAAAAAAAACAATACAGTTCTCGTAGTCGTCGGCACAGGAGAGTGTAAAATGTAAAATAAATTCAACAATTGTACATTACAACAGACTCTAGTAGTAGTAGTAGCAATAGTGGGAGCAAATGGGGCATGGGGATTCGTTGCACAAGTTATTGCACTCTTAGAAGATAAAAAATGGTTTAAAGAGTTGCCCCGGCATTCTCCAACAGTCGCTTCGACCTATTGCAAACCTGCACTTGGCTGTCCCCTGTATTGCTACTATTTCCCTATAAAAGAAAAACGTTCAGTAAAAAAACGAAATGAATAAAATCTAACAACTACGTACCCTAACCTTGAAAACGTGTCATTCTTTTACTTGCGTAATGT] consensusID : consensus_6557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [CTACGTTTGCTTCAGCTCCTATGGACCCACCCTGTATTANATTANGCCCCTGTTAGGACGGAATATCNCTTGGTTTNGCCCCATAACCCNNCGTGACNGTCACCGGATCTTTTCGNCATTCGCTNANATCCATCACTGATCAGGTTGCTTCGTTAGTTGCGCTCCGGGTCATGCATGGNACGTACGCTGCTACAGAAACTCGCTACNAGNANTAGAAATTTCANATCACTANTNTGCTACCATTACCAACCAGGGCTNCTACGTANGTAAGTAGTAGCAAATAGTGGGACGCAATACTGGGGCATGGGGATTCGTTGCACCCNGTTATTGCACTCTTAGAAGATAAAAAAATGGTTTAAAGAGTTGCCCCGGCTTTCTGCGACAGTCGCTTCGACCTATTGTAAACCTGCACTTGGCTGTACCNACCCTCGTGCCGATTCTGCTGAAA] [-] EMBL BX469367 [CTACGTTTGCTTCAGCTCCTATGGACCCACCCTGTATTANATTANGCCCCTGTTAGGACGGAATATCNCTTGGTTTNGCCCCATAACCCNNCGTGACNGTCACCGGATCTTTTCGNCATTCGCTNANATCCATCACTGATCAGGTTGCTTCGTTAGTTGCGCTCCGGGTCATGCATGGNACGTACGCTGCTACAGAAACTCGCTACNAGNANTAGAAATTTCANATCACTANTNTGCTACCATTACCAACCAGGGCTNCTACGTANGTAAGTAGTAGCAAATAGTGGGACGCAATACTGGGGCATGGGGATTCGTTGCACCCNGTTATTGCACTCTTAGAAGATAAAAAAATGGTTTAAAGAGTTGCCCCGGCTTTCTGCGACAGTCGCTTCGACCTATTGTAAACCTGCACTTGGCTGTACCNACCCTCGTGCCGATTCTGCTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6557#0 TCTATGTTTTACGATTGAAATCTATCTATTTGCCGAACAGTTTGCCCGTTTGCCGATCCT 60 consensus_6557#1 ------------------------------------------------------------ consensus_6557#0 TAGGATGACAGTTGCTGGGCTGTGTGTAGTATCTCTCGTCGCGGTTTGCACTTGGTTTCC 120 consensus_6557#1 ------------------------------------------------------------ consensus_6557#0 GTTGCGTTTTCATATTACATACATCCTATTATAAGCCTACGCCGCGCAGTGTACACGGTT 180 consensus_6557#1 ------------------------------------------------------------ consensus_6557#0 TTTCCAGCTTGCCGCTGTCTCTGCATATTGCGCATGTGTGTTTAGAGGTGAAATCTTTAA 240 consensus_6557#1 ------------------------------------------------------------ consensus_6557#0 CCGTGCATTAACATTTACAACAGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAAC 300 consensus_6557#1 ------------------------------------------------------------ consensus_6557#0 GGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAAAAGAAAAAAAAACGT 360 consensus_6557#1 ------------------------------------------------------------ consensus_6557#0 TCACATTTGTCATAGAAAACATTTCTATAACTTTTTTTTCTCTCCCAATCTTATTGGTTG 420 consensus_6557#1 ------------------------------------------------------------ consensus_6557#0 ACACACTTGCTGTCCTTTTACTTGTTTTGAAGGATAGAAAGTATTTTACGTTCTTTTTTT 480 consensus_6557#1 ------------------------------------------------------------ consensus_6557#0 TAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACATGGTTTTTTGTTTATGTT 540 consensus_6557#1 -----------------------------------------------------CTACGTT 7 ** *** consensus_6557#0 TATGGCGATT--TGTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTC 598 consensus_6557#1 TGCTTCAGCTCCTATGGACCCACCCTGTATTANATTANGCCCCTGTTAGGACGGAATATC 67 * * * * * * ** * ** * * ** **** ** * ** consensus_6557#0 CCTCAGGGTGTCCG---AACTGGTCATTTTTATCAATTTTCCCTCAGTATTTTATCTATG 655 consensus_6557#1 NCTTGGTTTNGCCCCATAACCCNNCGTGACNGTCACCGGATCTTTTCGNCATTCGCTNAN 127 ** * * ** *** * * *** * * ** ** consensus_6557#0 ACACGAAATACCCTAGAGAACCTTGTTTGCCAATAGTATGAACGATTAAAAAAACAATAC 715 consensus_6557#1 ATCCATCACTGATCAGGTTGCTTCGTTAGTTG-CGCTCCGGGTCATGCATGGNACG-TAC 185 * * * ** * * *** * * * ** * ** *** consensus_6557#0 AGTTCTCGTAGTCGTCGGCACAGGAGAGTGTAAAATGTAAAATAA-ATTCAACAATTGTA 774 consensus_6557#1 GCTGCTACAGAAACTCGCTACNAGN-ANTAGAAATTTCANATCACTANTNTGCTACCATT 244 * ** *** ** * * * *** * * * * * * * * * consensus_6557#0 CATTACAACAGGCTCTA-GTAGT--AGTAGTAGCAA-TAGTGGGA-GCAAA--TGGGGCA 827 consensus_6557#1 ACCAACCAGGGCTNCTACGTANGTAAGTAGTAGCAAATAGTGGGACGCAATACTGGGGCA 304 ** * * *** *** *********** ******** **** ******* consensus_6557#0 TGGGGATTCGTTGCACA-AGTTATTGCACTCTTAGAAGATAAAAAA-TGGTTTAAAGAGT 885 consensus_6557#1 TGGGGATTCGTTGCACCCNGTTATTGCACTCTTAGAAGATAAAAAAATGGTTTAAAGAGT 364 **************** *************************** ************* consensus_6557#0 TGCCCCGGCATTCTCCAACAGTCGCTTCGACCTATTGCAAACCTGCACTTGGCTGTCCCC 945 consensus_6557#1 TGCCCCGGCTTTCTGCGACAGTCGCTTCGACCTATTGTAAACCTGCACTTGGCTGTACCN 424 ********* **** * ******************** ****************** ** consensus_6557#0 TGTATTGCTACTATTTCCCTATAAAAGAAAAACGTTCAGTAAAAAAACGAAATGAATAAA 1005 consensus_6557#1 ACCCTCGTGCCGATTCTGCTGAAA------------------------------------ 448 * * * *** ** ** consensus_6557#0 ATCTAACAACTACGTACCCTAACCTTGAAAACGTGTCATTCTTTTACTTGCGTAATGT 1063 consensus_6557#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||