These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence [CCCCGCGGTTATAATACTGTGTACACAATTAAGCAAACTATTGGACTGGATTTAAAATGGCCACAAAAGCAAGAATGACGGAATATAAAGAAGGAAGACAATTGAGTTACTGGATGAGGGTTTTTTTAATTTGTTGTTTACTTTTCCGTTGTCATTGGCTGTATTGTACGAAGGAGTTTTGTCCCTTATTGTAGGAAGTTTGATGAAGTTTATTGAACGGTAGTTGATAATGTGAAATTTGTCGTTAAACACTCTACACACACACACACGTAGTGCTAAACCTCAAAAAAGGTATGTGAGTTTCGTTTGAATTCAAATTACAAACAAATTATGAAACAAAAACAGAGAACNAATCAGCAAAAAAGAAAATCCAACTTTCATCAAGTGGATTAAGTGATATGATTTGTTTTGTTACACTACTACAGGCAAACAAGCTGTGAAGCGAATAGTGTTTTTTTTTGTTGCCTCAAACTGCATCTGAGTTTGTAACGAATTTAACGAAGTTTTTGTTCTGCTAATTTTGTCCCCATCGGAGAAGATGTAAAGTTATCTCAAACTCAATGGAAGGGCAGAGGAAAAAACACAAAACGAATAAAACACACACCATTTGTAACTAATAAAGACGGAGAACGAAATGAAGTGAATCACGGAACAGTGGAATACAATTTGATGCGAACANTTTGCATCATACTNNCTAATGGCANTACTATCACACACACAAACACATAAAGCGAAACGTAAACACAACACTAAACAAAACACACAACAAATGGTCAAATTACCAACCAACTGTTCTACACACACANATCACACCTAACTTGAAACAACNAANTTATTNGCTACCCATNCACAA] [+] EMBL AL695358 [CCCCGCGGTTATAATACTGTGTACACAATTAAGCAAACTATTGGACTGGATTTAAAATGGCCACAAAAGCAAGAATGACGGAATATAAAGAAGGAAGACAATTGAGTTACTGGATGAGGGTTTTTTTAATTTGTTGTTTACTTTTCCGTTGTCATTGGCTGTATTGTACGAAGGAGTTTTGTCCCTTATTGTAGGAAGTTTGATGAAGTTTATTGAACGGTAGTTGATAATGTGAAATTTGTCGTTAAACACTCTACACACACACACACGTAGTGCTAAACCTCAAAAAAGGTATGTGAGTTTCGTTTGAATTCAAATTACAAACAAATTATGAAACAAAAACAGAGAACNAATCAGCAAAAAAGAAAATCCAACTTTCATCAAGTGGATTAAGTGATATGATTTGTTTTG ] [+] EMBL AL934550 [ ggcccagGGAT AGGG TTTTTTAATTTGTTGTTTACTTTTCCGTTGTCATTGGCTGTATTGTACGAAGGAGTTTTGTCCCTTATTGTAGGAAGTTTGATGAAGTTTATTGAACGGTAGTTGATAATGTGAAATTTGTCGTTAAACACTCTACACACACACACACGTAGTGCTAAACCTCAAAAAAGGTATGTGAGTTT GTTTGAATT AAATTACAAACAAATTATGAAACAAAAA AGAGAAAAAATCAGCAAAAAAGAAAATCCAACTTTCATCAAGTGGATTAAGTGATATGATTTGTTTTGTTACACTACTACAGGCAAACAAGCTGTGAAGCGAATAGTGTTTTTTTTTGTTGCCTCAAACTGCATCTGAGTTTGTAACGAATTTAACGAAGTTTTTGTTCTGCTAATTTTGTCCCCATCGGAGAAGATGTAAAGTTATCTCAAACTCAATGGAAGGGCAGAGGAAAAAACACAAAACGAATAAAACACACACCATTTGTAACTAATAAAGACGGAGAACGAAATGAAGTGAATCACGGAACAGTGGAATACAATTTGATGCGAACANTTTGCATCATACTNNCTAATGGCANTACTATCACACACACAAACACATAAAGCGAAACGTAAACACAACACTAAACAAAACACACAACAAATGGTCAAATTACCAACCAACTGTTCTACACACACANATCACACCTAACTTGAAACAACNAANTTATTNGCTACCCATNCACAA] consensusID : consensus_6561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [GTGCCGATTGTTGTTCTCGGTGGGGGACTGTGTTTGTGAACATATTAATCAAATCGAATAATGAGCAGAACGGTGATGAAAGACTCTCTGCACCACAATCGCACACATACAAACACACACACAGACATAGACACAACCGAATAAAAAAACCATAAGCATAAGTAGTAAAGCAAAGAAAAGGACTTGGAAGTAGAGGAAATCATCGTGCAACACGATCACTCTAATCACTAGAAGGAAGCATTATTTGGTAGTAGCAGCGACGTTTGGAAGGAGCAGTCATCGATGGTTGTTTTCCTTCTTTATTTTTTTTTACAAAATATTCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGATTGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAACACGCGAAAGCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAGAAAAAAAACGCAAACGAATAAAACACACACATTTGAAACCAACAAAA] [+] EMBL BX622717 [GTGCCGATTGTTGTTCTCGGTGGGGGACTGTGTTTGTGAACATATTAATCAAATCGAATAATGAGCAGAACGGTGATGAAAGACTCTCTGCACCACAATCGCACACATACAAACACACACACAGACATAGACACAACCGAATAAAAAAACCATAAGCATAAGTAGTAAAGCAAAGAAAAGGACTTGGAAGTAGAGGAAATCATCGTGCAACACGATCACTCTAATCACTAGAAGGAAGCATTATTTGGTAGTAGCAGCGACGTTTGGAAGGAGCAGTCATCGATGGTTGTTTTCCTTCTTTATTTTTTTTTACAAAATATTCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGATTGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAACACGCGAAAGCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAGAAAAAAAACGCAAACGAATAAAACACACACATTTGAAACCAACAAAA] consensusID : consensus_6561#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAAACACGCGAAAGCTCCATTTTAACCGTGCGCTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAAAAGGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACAAGAAAACGCTGCAGGACGTGTGATGTGTGAACACTTAAAGGAGACGAAAACGAACGAGAAAGGGGAAGCGGATAAACGTAATGGACGTGCATTTTGAAATGGATTTTTTGTAGAATTTTCGAAACTGAATTAATAAACCAATCACCAAATGAGCGGTGTAAAATCGGTCAATCGGTGAGGTAAATAATGAAATAGAACAGCAAACACACATACATACACACAAACACACAAACACGAGCAAAGAGAAGTGAAGGTAAAAGGAGCTAATACTGTGTAACACAATTAAGTAAACTATTGGACTGGATTTATAATGGCCACAAAAGCAAGAATA] [+] EMBL BM578310 [CCGAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAAACACGCGAAAGCTCCATTTTAACCGTGCGCTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAAAAGGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACAAGAAAACGCTGCAGGACGTGTGATGTGTGAACACTTAAAGGAGACGAAAACGAACGAGAAAGGGGAAGCGGATAAACGTAATGGACGTGCATTTTGAAATGGATTTTTTGTAGAATTTTCGAAACTGAATTAATAAACCAATCACCAAATGAGCGGTGTAAAATCGGTCAATCGGTGAGGTAAATAATGAAATAGAACAGCAAACACACATACATACACACAAACACACAAACACGAGCAAAGAGAAGTGAAGGTAAAAGGAGCTAATACTGTGTAACACAATTAAGTAAACTATTGGACTGGATTTATAATGGCCACAAAAGCAAGAATA] consensusID : consensus_6561#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [TCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGATTGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAACACGCGAAAGCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACAAGAAAACGCTGCAGGACGTGTGATGTGTGAACACTTAAAGAAGACGATTGAGTGACTGGATGAGGGGTTT] [+] EMBL BX605964 [TCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGATTGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAACACGCGAAAGCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACAAGAAAACGCTGCAGGACGTGTGATGTGTGAACACTTAAAGAAGACGATTGAGTGACTGGATGAGGGGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6561#1 GTGCCGATTGTTGTTCTCGGTGGGGGACTGTGTTTGTGAACATATTAATCAAATCGAATA 60 consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 ------------------------------------------------------------ consensus_6561#0 ------------------------------------------------------------ consensus_6561#1 ATGAGCAGAACGGTGATGAAAGACTCTCTGCACCACAATCGCACACATACAAACACACAC 120 consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 ------------------------------------------------------------ consensus_6561#0 ------------------------------------------------------------ consensus_6561#1 ACAGACATAGACACAACCGAATAAAAAAACCATAAGCATAAGTAGTAAAGCAAAGAAAAG 180 consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 ------------------------------------------------------------ consensus_6561#0 ------------------------------------------------------------ consensus_6561#1 GACTTGGAAGTAGAGGAAATCATCGTGCAACACGATCACTCTAATCACTAGAAGGAAGCA 240 consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 ------------------------------------------------------------ consensus_6561#0 ------------------------------------------------------------ consensus_6561#1 TTATTTGGTAGTAGCAGCGACGTTTGGAAGGAGCAGTCATCGATGGTTGTTTTCCTTCTT 300 consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 ------------------------------------------------------------ consensus_6561#0 ------------------------------------------------------------ consensus_6561#1 TATTTTTTTTTACAAAATATTCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGAT 360 consensus_6561#3 --------------------TCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGAT 40 consensus_6561#2 ------------------------------------------------------------ consensus_6561#0 -----------------------CCCCGCGGTTATAATACTGTGTACACAATTAAGCAAA 37 consensus_6561#1 TGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAG 420 consensus_6561#3 TGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAG 100 consensus_6561#2 ----------------------------------------------------CCGAGAAG 8 consensus_6561#0 CTATTGGACTGGATTTAAAATGGCCACAAAAGCAAGAATGACGGAATATAAAGAAGGAAG 97 **** consensus_6561#1 CCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCG-----AACA 475 consensus_6561#3 CCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCG-----AACA 155 consensus_6561#2 CCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCG-----AACA 63 consensus_6561#0 ACAATTGAGTTACTGGATGAGGGTTTTTTTAATTTGTTGTTTACTTTTCCGTTGTCATTG 157 ** ** *** * * ** ** * *** * ** * consensus_6561#1 GTGGTATTGA--GAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAA-CACGCGAAA 532 consensus_6561#3 GTGGTATTGA--GAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAA---CACGCGAAA 210 consensus_6561#2 GTGGTATTGA--GAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAAACACGCGAAA 121 consensus_6561#0 GCTGTATTGTACGAAGGAGTTTTGTCCCTTATTGTAGGAAGTTTGATGAAGTTTATTGAA 217 * ****** *** *** ** ** ** * ** consensus_6561#1 GCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAA 592 consensus_6561#3 GCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAA 270 consensus_6561#2 GCTCCATTTTAACCGTGCGCTTTT-CTCTGCACGGCAAATGTACATATTAATGATAGCAA 180 consensus_6561#0 CGGTAGTTGATAATGTGAAATTTGTCGTTAAACACTCTACACACACACACACG-TAGTGC 276 ** * *** *** * * ** * *** * * * *** consensus_6561#1 CAA-CAACAACAACAAAA--CAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTA- 648 consensus_6561#3 CAA-CAACAACAACAAAA--CAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTA- 326 consensus_6561#2 CAA-CAACAACAACAAAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAA 239 consensus_6561#0 TAAACCTCAAAAAAGGTATGTGAGT-TTCGTTTGAATTCAAATTACAAACAAATTATGAA 335 ** * *** ** * * ** * * * * * ** * * ** * consensus_6561#1 ---GAAAAAAAACGCAAACGAATAAAACACACAC-ATTTGAAACCAACAAA-A------- 696 consensus_6561#3 ---GAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACA-AGAAAACG 382 consensus_6561#2 AAGGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACA-AGAAAACG 298 consensus_6561#0 ACAAAAACAGAGAACNAATCAGCAAAAAAGAAAA-TCCAACTTTCATCAAGTGGATTAAG 394 *** * * * * * *** * * * ** consensus_6561#1 ------------------------------------------------------------ consensus_6561#3 CTGCAGGACGTGTGATGTGTGAACACTTAAAGAAGACGATTGAGTGACTGGATGAGGGGT 442 consensus_6561#2 CTGCAGGACGTGTGATGTGTGAACACTTAAAGGAGACGAAAACGAACGAGAAAGGGGAAG 358 consensus_6561#0 TGATATGATTTGTTTTGTTACACTACTACAGGCAAACAAGCTGTGAAGCGAATAGTGTTT 454 consensus_6561#1 ------------------------------------------------------------ consensus_6561#3 TT---------------------------------------------------------- 444 consensus_6561#2 CGGATAAACGT----AATGGACGTGCATTTTGAAATGGATTTTTTGTAGAATTTTCGAAA 414 consensus_6561#0 TTTTTTGTTGCCTCAAACTGCATCTGAGTTTGTAACGAATTTAACGAAGTTTTTGTTCTG 514 consensus_6561#1 ------------------------------------------------------------ consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 CTGAATTAATAAACCAATCACCAAATGAGCGGTGTAAAATCGGTCAATCGGTGAGGTAAA 474 consensus_6561#0 CTAATTTTGTCCCCATCGGAGAAGATGTAAAGT-TATCTCAAACTCAATGGAAGGGCAGA 573 consensus_6561#1 ------------------------------------------------------------ consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 TAATGAAATAGAACAGCAAACACACATACATACACACAAACACACAAACACGAGCAAAGA 534 consensus_6561#0 GGAAAAAACACAAAACGAATAAAACACACACCATTTGTAACTAATAAAGACGGAGAACGA 633 consensus_6561#1 ------------------------------------------------------------ consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 GAAGTGAAGGTAAAAGGAGCT----AATACTGTGTAACACAATTAAGTAAACTATTGGAC 590 consensus_6561#0 AATGAAGTGAATCACGGAACAGTGGAATACAATTTGATGCGAACANTTTGCATCATACTN 693 consensus_6561#1 ------------------------------------------------------------ consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 TGGATTTATAATGGCCACAAAAGCAAGAATA----------------------------- 621 consensus_6561#0 NCTAATGGCANTACTATCACACACACAAACACATAAAGCGAAACGTAAACACAACACTAA 753 consensus_6561#1 ------------------------------------------------------------ consensus_6561#3 ------------------------------------------------------------ consensus_6561#2 ------------------------------------------------------------ consensus_6561#0 ACAAAACACACAACAAATGGTCAAATTACCAACCAACTGTTCTACACACACANATCACAC 813 consensus_6561#1 ---------------------------------------- consensus_6561#3 ---------------------------------------- consensus_6561#2 ---------------------------------------- consensus_6561#0 CTAACTTGAAACAACNAANTTATTNGCTACCCATNCACAA 853 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||