These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1322 fasta sequence [CCGCCCACGCGTCC-CGCGCGGGCTGCGGATGTGCCTTCCTACGTTGGTAATGTTAATTTATGGCCAAACATTTGCAATTTCCCCGGTTTAACATTCACATTCAGTATGTTTGAAAGTAAAAGAGGCCTTTAATTAGCTTTGTAAGTAATAAAACCGCGTA-CTTAAGTACTGCCACATCCGATTCGAAACGCTTCTAGAGAGTGTGGTTCTGGTGAAACATGCATTTATAATTCTTCCTGAACTGATCCGTTGCAATGCATCGCGATGGAGTTCCACGACGAGATCGTTATAGAACGCACCAAAATAATGGCCGTCAATGCGGACAATTCGTTCCAGTATGAGGAGGTACAAATCAAAGAAGAAATTGCATCTGATTCAGAGGAAATAGTACCGGTAATAAGCAACGGGAAGAAAGCAGGGGCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTTTACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGAGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCA-TTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGA-TGAGC-GGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCAGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGAGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACGTTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTATCTGTCG-CTTCGGAGACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGATAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAAGAATTTTGAATTTTGAATCTAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGTTGGG] [+] EMBL BM594808 [CCGCCCACGCGTCCGCGCGCGGGCTGCGGATGTGCCTTCCTACGTTGGTAATGTTAATTTATGGCCAAACATTTGCAATTTCCCCGGTTTAACATTCACATTCAGTATGTTTGAAAGTAAAAGAGGCCTTTAATTAGCTTTGTAAGTAATAAAACCGCGTAGCTTAAGTACTGCCACATCCGATTCGAAACGCTTCTAGAGAGTGTGGTTCTGGTGAAACATGCATTTATAATTCTTCCTGAACTGATCCGTTGCAATGCATCGCGATGGAGTTCCACGACGAGATCGTTATAGAACGCACCAAAATAATGGCCGTCAATGCGGACAATTCGTTCCAGTATGAGGAGGTACAAATCAAAGAAGAAATTGCATCTGATTCAGAGGAAATAGTACCGGTAATAAGCAACGGGAAGAAAGCAGGGGCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTTTACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGGGCTAAGCATCAATGCGAGAATTGTCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCA TTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAACGATTGAGC GGTGTGCTGAACAACGGCCCTT ] [+] EMBL CNS09N7Y [ tCGTGC CGCGCGGGCTGCGGATGTGCCTTCCTACGTTGGTAATGTTAATTTATGGCCAAACATTTGCAATTTCCCCGGTTTAACATTCACATTCAGTATGTTTGAAAGTAAAAGAGGCCTTTAATTAGCTTTGTAAGTAATAAAACCGCGTA CTTAAGCACTGCCACATCCGATTCGAAACGCTTCTAGAGAGTGTGGTTCTGGTGAAACATGCATTTATAATTCTTCCTGAACTGATCCGTTGCAATGCATCGCGATGGAGTTCCACGACGAGATCGTTATAGGACGCACCAAAATAATGGCCGTCAATGCGGAAAATTCGTTCCAGTATGAGGAGGTACAAATCAAAGAAGAAATTGCATCTGATTCAGAGGAAATAGTACCGGTAATAAGCAACGGGAAGAAAGCAGGGGCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTTTACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGAGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTACGCCTGCGTCGGCACGAGCGAAAGCATTTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGA TGAGC GGTGTGCTGAAAAACGGTCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCAGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGAGACTTTCGAAAA CCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAAC ] [-] EMBL CNS09N7Z [ GCAACGGGAAGAAAGCAGGGGCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTTTACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGAGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTACGCCTGCGTCGGCACGAGCGAAAGCA TTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGA TGAGC GGTGTGCTGAAAAACGGTCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCAGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGAGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACGTTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTATCTGTCG CTTCGGAGACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGATAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAA ] [+] EMBL CNS08JOC [ AGTATCGTTCGCCTGCGTCGGCACGAGCGAAA CA TTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGA TGAGCGGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCGGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGGGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACATTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTATCTGTCGCCTTCGGAGACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGGTAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAAGAATTTTGAATTTTGAATCTAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGTTGGG] consensusID : consensus_6576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [TTCCTCGAGAACTGTTGGCCCACTGGAATAATGCAGGCAGGCAGGGCAGTGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCATTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGATGAGCGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCGGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGGGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACATTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTTTTTGTCGCTTCGGAAACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGGTAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAAGAA] [-] EMBL CNS08JOD [TTCCTCGAGAACTGTTGGCCCACTGGAATAATGCAGGCAGGCAGGGCAGTGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCATTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGATGAGCGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCGGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGGGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACATTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTTTTTGTCGCTTCGGAAACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGGTAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6576#0 CCGCCCACGCGTCCCGCGCGGGCTGCGGATGTGCCTTCCTACGTTGGTAATGTTAATTTA 60 consensus_6576#1 ------------------------------------------------------------ consensus_6576#0 TGGCCAAACATTTGCAATTTCCCCGGTTTAACATTCACATTCAGTATGTTTGAAAGTAAA 120 consensus_6576#1 ------------------------------------------------------------ consensus_6576#0 AGAGGCCTTTAATTAGCTTTGTAAGTAATAAAACCGCGTACTTAAGTACTGCCACATCCG 180 consensus_6576#1 ------------------------------------------------------------ consensus_6576#0 ATTCGAAACGCTTCTAGAGAGTGTGGTTCTGGTGAAACATGCATTTATAATTCTTCCTGA 240 consensus_6576#1 ------------------------------------------------------------ consensus_6576#0 ACTGATCCGTTGCAATGCATCGCGATGGAGTTCCACGACGAGATCGTTATAGAACGCACC 300 consensus_6576#1 ------------------------------------------------------------ consensus_6576#0 AAAATAATGGCCGTCAATGCGGACAATTCGTTCCAGTATGAGGAGGTACAAATCAAAGAA 360 consensus_6576#1 ------------------------------------------------------------ consensus_6576#0 GAAATTGCATCTGATTCAGAGGAAATAGTACCGGTAATAAGCAACGGGAAGAAAGCAGGG 420 consensus_6576#1 ------------------------------------------------------------ consensus_6576#0 GCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTT 480 consensus_6576#1 --------------------------------------------TTCCTCGAGAACTGTT 16 * ** * ** consensus_6576#0 TACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGAGCTAAGCATCAATGCGAGAAT 540 consensus_6576#1 GGCCCACTGGAA--TAATG-CAGGCAGGCA--GGGCAGTGCTAAGCATCAATGCGAGAAT 71 **** ***** *** ** * *** ***** ********************* consensus_6576#0 TGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCATTGGATG 600 consensus_6576#1 TGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCATTGGATG 131 ************************************************************ consensus_6576#0 AAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGT 660 consensus_6576#1 AAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGT 191 ************************************************************ consensus_6576#0 CGTATGCACGGTAGCGATGAGCGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGC 720 consensus_6576#1 CGTATGCACGGTAGCGATGAGCGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGC 251 ************************************************************ consensus_6576#0 GATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCAGAAGGCA 780 consensus_6576#1 GATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCGGAAGGCA 311 **************************************************** ******* consensus_6576#0 AGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGA 840 consensus_6576#1 AGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGA 371 ************************************************************ consensus_6576#0 AAGCATCCGGACGGTGACGCGAGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCA 900 consensus_6576#1 AAGCATCCGGACGGTGACGCGGGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCA 431 ********************* ************************************** consensus_6576#0 TGCAAGCAAACGTTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAG 960 consensus_6576#1 TGCAAGCAAACATTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAG 491 *********** ************************************************ consensus_6576#0 GTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCC 1020 consensus_6576#1 GTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCC 551 ************************************************************ consensus_6576#0 ACCACCCATCGGGAGTATCTGTCGCTTCGGAGACTCCATCGTACAAGTGTGATAAATGCG 1080 consensus_6576#1 ACCACCCATCGGGAGTTTTTGTCGCTTCGGAAACTCCATCGTACAAGTGTGATAAATGCG 611 **************** * ************ **************************** consensus_6576#0 AACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGA 1140 consensus_6576#1 AACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGG 671 *********************************************************** consensus_6576#0 TAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAG 1200 consensus_6576#1 TAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAG 731 ************************************************************ consensus_6576#0 AGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTA 1260 consensus_6576#1 AGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTA 791 ************************************************************ consensus_6576#0 AAGAATTTTGAATTTTGAATCTAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGTTG 1320 consensus_6576#1 AAGAA------------------------------------------------------- 796 ***** consensus_6576#0 GG 1322 consensus_6576#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||