These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGAAACACCGTTTATGGTAAAACAAATAGACAGTTGACCTCGGGGGGGTTTTCCCATGTCCCCTCTGTATCCCTTTCTCCCCCAGAGCATCTAAACCAGTGTTATAAAGCAAAAGAGAGCAAAGTCTACAAACAGAAGATTTAACTTAAACATAAACAGGAGCAAACTACACCAGAAAAGAGTGGGCGGAAAAAGCAGAAAAGAATAATAGTAAAGCGAAACAAGGGAGAAAGAAAAACGGCAGAGAAGGAAACAAATGAACTGGGGAAACAGTATAACAAACAAAGTTGTTCAAAGAGAGAAGAAAAGAAAGCATGTAATGAAAAGTAATGTTAAAAGAGAATAATGGAAGGTAAAAAAACACACACACTAAACTATTTAACACATCGTTGCAGAGAGAGAGAGGGAGAGAGAGAGAGATGCAAGGAGGTTAAATACATTTTGCTAAAAACATAGAAGTTGCTAAGTAAGAAGCAAAGAAAAGAAAGAGAAAAGCTGTTGAAAAGAGAGGGAGAGAGAGTGAGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCACACACTACCTACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTGAGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGGTTGCTC] [+] EMBL BM582055 [CCGAAACACCGTTTATGGTAAAACAAATAGACAGTTGACCTCGGGGGGGTTTTCCCATGTCCCCTCTGTATCCCTTTCTCCCCCAGAGCATCTAAACCAGTGTTATAAAGCAAAAGAGAGCAAAGTCTACAAACAGAAGATTTAACTTAAACATAAACAGGAGCAAACTACACCAGAAAAGAGTGGGCGGAAAAAGCAGAAAAGAATAATAGTAAAGCGAAACAAGGGAGAAAGAAAAACGGCAGAGAAGGAAACAAATGAACTGGGGAAACAGTATAACAAACAAAGTTGTTCAAAGAGAGAAGAAAAGAAAGCATGTAATGAAAAGTAATGTTAAAAGAGAATAATGGAAGGTAAAAAAACACACACACTAAACTATTTAACACATCGTTGCAGAGAGAGAGAGGGAGAGAGAGAGAGATGCAAGGAGGTTAAATACATTTTGCTAAAAACATAGAAGTTGCTAAGTAAGAAGCAAAGAAAAGAAAGAGAAAAGCTGTTGAAAAGAGAGGGAGAGAGAGTGAGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCACACACTACCTACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTGAGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGGTTGCTC] consensusID : consensus_6580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGCACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTTTGTTAATACACACTGTAATAATAATACTGCAAAAAGGGGGGGGGGCCCGCAAATGTAACGTAATTGAGAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGAGCGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCGATCGTGTTTTTTTTGGGTTTAAAATACGATTGCGATAGTGTTTCTTAGTGTTAGTGGTACAGAGGTAGCAGCACTATAAAGCGTACGTCACACATGTATAAGCAGAGAAAAGGGTTTTTGGGGTTCAACACACCCACCTGACCACATCCACACACACACACAAATCCTTATTCGATGTTGGGGTATGAGTTGTTGTCTCCAAATTGGGTTTAAATTTATGGATATACAACCAAAACAGATCCACACACACACCCTGTAGAGGAAGGTAGCGATCGTGTAGTACACGTTAGGCTTCTACAAGTATGATAAATACATGAACGTCGATTATAATTTTCTACCTCATTTATTTGATAATTAAAATACGTTCACAAATGACCCCGTTGCTCGATATGTAAGCGAAGGGGCGCGCACGATGGGTTGAAGTTAATGGTGGTTTTTTATTTTCTTATTACCAAAAACCAAACAATACATCCA] [+] EMBL BM640001 [CCGCACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTTTGTTAATACACACTGTAATAATAATACTGCAAAAAGGGGGGGGGGCCCGCAAATGTAACGTAATTGAGAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGAGCGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCGATCGTGTTTTTTTTGGGTTTAAAATACGATTGCGATAGTGTTTCTTAGTGTTAGTGGTACAGAGGTAGCAGCACTATAAAGCGTACGTCACACATGTATAAGCAGAGAAAAGGGTTTTTGGGGTTCAACACACCCACCTGACCACATCCACACACACACACAAATCCTTATTCGATGTTGGGGTATGAGTTGTTGTCTCCAAATTGGGTTTAAATTTATGGATATACAACCAAAACAGATCCACACACACACCCTGTAGAGGAAGGTAGCGATCGTGTAGTACACGTTAGGCTTCTACAAGTATGATAAATACATGAACGTCGATTATAATTTTCTACCTCATTTATTTGATAATTAAAATACGTTCACAAATGACCCCGTTGCTCGATATGTAAGCGAAGGGGCGCGCACGATGGGTTGAAGTTAATGGTGGTTTTTTATTTTCTTATTACCAAAAACCAAACAATACATCCA] consensusID : consensus_6580#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGGAAAAGAAAGCAAGTAATGAAAAGTAATGTTAAAAGAGAAGAATGGAAAGTAAAAAAACACACACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTTCTTTGGTTTTTTGGTTTGCTTTTTGTTTCCCACTTGACCGTCGTGTCCCCAGTTAATAATAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGGACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTGTTAATACACACTGTAATAATAATACTGCAAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGAGAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGCGCGCGCGTGTGTGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCGATCGTGTTTTTTTTGGGTTTAAAATACGATTGCGATAGTGTTTCTTAGTGTTAGTAGTACAGAGATAGCAGCACTATAAAGCGTGTACGTCACACATGTATAAGCAGAGAAAAGGGTTTTTGGGGTTGAACACACCCACCTGACCACATCCACACAGACACAAATCCTTATTCGATGTTGGGGTATG] [+] EMBL BM619544 [CCGGAAAAGAAAGCAAGTAATGAAAAGTAATGTTAAAAGAGAAGAATGGAAAGTAAAAAAACACACACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTTCTTTGGTTTTTTGGTTTGCTTTTTGTTTCCCACTTGACCGTCGTGTCCCCAGTTAATAATAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGGACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTGTTAATACACACTGTAATAATAATACTGCAAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGAGAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGCGCGCGCGTGTGTGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCGATCGTGTTTTTTTTGGGTTTAAAATACGATTGCGATAGTGTTTCTTAGTGTTAGTAGTACAGAGATAGCAGCACTATAAAGCGTGTACGTCACACATGTATAAGCAGAGAAAAGGGTTTTTGGGGTTGAACACACCCACCTGACCACATCCACACAGACACAAATCCTTATTCGATGTTGGGGTATG] consensusID : consensus_6580#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CCGCCCACGCGTCCCGTTGAAAAGAGAGAGAGAGAGAGAGAGAGAGTGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCACACACTACCTACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTGAGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGTTTGCTCAAATGTGTGTATGTGTGTTCGCCACACTGCTGTGTAAGGAAAGAGGAGTAAGAGAGAGAGAAAGGAAGAGAAAATCACGTGCGCATTTCCCTCTACGTGTGCGGTCTTATTTCCAGTGAGACTAAAGTCCAAAAAACTTAAGTTGTTCCTCCTGCACCTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAGTAGAGCCTAATAATCCAGCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTTCTTTGGTTTTTTGGTTTGCCTTTTGTTTCCCA] [+] EMBL BM598854 [CCGCCCACGCGTCCCGTTGAAAAGAGAGAGAGAGAGAGAGAGAGAGTGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCACACACTACCTACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTGAGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGTTTGCTCAAATGTGTGTATGTGTGTTCGCCACACTGCTGTGTAAGGAAAGAGGAGTAAGAGAGAGAGAAAGGAAGAGAAAATCACGTGCGCATTTCCCTCTACGTGTGCGGTCTTATTTCCAGTGAGACTAAAGTCCAAAAAACTTAAGTTGTTCCTCCTGCACCTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAGTAGAGCCTAATAATCCAGCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTTCTTTGGTTTTTTGGTTTGCCTTTTGTTTCCCA] consensusID : consensus_6580#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAGTAGAGCCTAATAATCCAGCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTACCATTCTGATGTTGGAGAGTGATTTTTTTTTTTTTTTGTTTCCCACCTGACCGTCGTGTCCCCAGTTAATAATAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGGACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTGTTAATACACACTGTAATAATGATACTGCAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGAGAGAGAGAGAAATGGGAAGGCGCGCACGCGCGTGTGTGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCCATCGGGTTTTTTTTGGGTTTAAAATACGATCGCGATAGTGTTTCTTAGTGTTAGTAGTACA] [+] EMBL AGA282236 [CTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAGTAGAGCCTAATAATCCAGCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTACCATTCTGATGTTGGAGAGTGATTTTTTTTTTTTTTTGTTTCCCACCTGACCGTCGTGTCCCCAGTTAATAATAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGGACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTGTTAATACACACTGTAATAATGATACTGCAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGAGAGAGAGAGAAATGGGAAGGCGCGCACGCGCGTGTGTGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCCATCGGGTTTTTTTTGGGTTTAAAATACGATCGCGATAGTGTTTCTTAGTGTTAGTAGTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6580#2 CCGGAAAAGAAAGCAAGTAATGAAAAGTAATGTTAAAAGAGAAGAATGGAAAGTAAAAAA 60 consensus_6580#4 -----------CTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAG--TAGAGCCTAATAAT 47 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 ------------------------------------------------------------ consensus_6580#3 ------------------------------------------------------------ consensus_6580#2 ACACACACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTT--CTT 118 consensus_6580#4 CCA-GCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTACCATTCTGATGT 106 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 ------------------------------------------------------------ consensus_6580#3 ------------------------------------------------------------ consensus_6580#2 TGG----TTTTTTGGTTTGCTTTTTGTTTCCCACTTGACCGTCGTGTCCCCAGTTAATAA 174 consensus_6580#4 TGGAGAGTGATTTTTTTTTTTTTTTGTTTCCCACCTGACCGTCGTGTCCCCAGTTAATAA 166 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 ------------------CCGAAACACCGTTTATGGTAAAACAAATAGACAGTTGACCTC 42 consensus_6580#3 ------------------------------------------------------------ consensus_6580#2 TAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGG 234 consensus_6580#4 TAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGG 226 consensus_6580#1 ----------------------------------------------------------CC 2 consensus_6580#0 GGGGGGGTTTTCCCATGTCCCCTCTGTATCCCTTTCTCCCCCAGAGCATCTAAACCAGTG 102 consensus_6580#3 --------------------------------CCGCCCACGCGTCCCGTTGAAAAGAGAG 28 consensus_6580#2 ACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGT----ATGCGTGTGT--GTTAAT 288 consensus_6580#4 ACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGT----ATGCGTGTGT--GTTAAT 280 consensus_6580#1 GCACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGT----ATGCGTGTGTTTGTTAAT 58 consensus_6580#0 TTATAAAGCAAAAGAGAGCAAAGTCTACAAACAGAAGATTTAACTTAAACATAAACAGGA 162 consensus_6580#3 AGAGAGAGAGAGAGAGAGTGGGGT-TATAGAGCGAAGA---AAGCTTCTCGTCAGT--GT 82 * * ** * * * * consensus_6580#2 ACACACTGTAATAATAATACTGCAAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGA 348 consensus_6580#4 ACACACTGTAATAATGATACTGCAAAAAA-CAAAAGGCCCCGCAAATGTAACGTAATTGA 339 consensus_6580#1 ACACACTGTAATAATAATACTGCAAAAAGGGGGGGGGGCCCGCAAATGTAACGTAATTGA 118 consensus_6580#0 GCAAACTACACCAGAAA-AGAGTGGGCGG-AAAAAGCAGAAAAGAATAATAGTAAAGCGA 220 consensus_6580#3 TTAACGTTTACTAATCACACACTACCTAC-GACCTACACCTTTGAATGTTTCCAAACACG 141 * * * * * * *** ** consensus_6580#2 GAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGCGCGCGCGTGTGTGTGTATGAGTTGGGA 408 consensus_6580#4 GAGA--------GAGAGAAATGGGAAGGCGCGCACGCGCGTGTGTGTGTATGAGTTGGGA 391 consensus_6580#1 GAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGAGCG----------TGTATGAGTTGGGA 168 consensus_6580#0 AACAA-GGGAGAAAGAAAAACGGCAGAGAAGGAAACAAATGAACTGGGGAAACAGTATAA 279 consensus_6580#3 ATTAA-AATGATGAGTGAGACGAC-GTTTTGGAACTCGGCAACGGAACGGAACGATGGAA 199 * ** * * * * * * consensus_6580#2 TCGACACGATCGTTACGTTCCCTCGAT-CGTGTTTTTTTTGGGTTTAAAATACGATTGCG 467 consensus_6580#4 TCGACACGATCGTTACGTTCCCTCCAT-CGGGTTTTTTTTGGGTTTAAAATACGATCGCG 450 consensus_6580#1 TCGACACGATCGTTACGTTCCCTCGAT-CGTGTTTTTTTTGGGTTTAAAATACGATTGCG 227 consensus_6580#0 CAAACAAAGTTGTTCAAA-GAGAGAAGAAAAGAAAGCATGTAATGAAAAGTAATGTTAAA 338 consensus_6580#3 TGATCCTGTTTGCTCAAATGTGTGTATGTGTGTTCGC-CACACTGCTGTGTAAGGAAAGA 258 * * * * * * * ** consensus_6580#2 ATAGTGTTTCTTAGTGTTAGTAGTACAGAGATAGCAGCACTATAAAGCGTGTACGTCACA 527 consensus_6580#4 ATAGTGTTTCTTAGTGTTAGTAGTACA--------------------------------- 477 consensus_6580#1 ATAGTGTTTCTTAGTGTTAGTGGTACAGAGGTAGCAGCACTATAAAGCG--TACGTCACA 285 consensus_6580#0 AGAG-AATAATGGAAGGTAAAAAAACACACACACTAAACTATTTAACACATCGTTGCAGA 397 consensus_6580#3 GGAGTAAGAGAGAGAGAAAGGAAGAGAAAATCACGTGCGCATTTCCCTCTACGT-GTGCG 317 ** * * * * consensus_6580#2 CATGTATAAGCAGAGAAAAGGGTTTTTGGGG---TTGAACACACCCACCTGACCACATCC 584 consensus_6580#4 ------------------------------------------------------------ consensus_6580#1 CATGTATAAGCAGAGAAAAGGGTTTTTGGGG---TTCAACACACCCACCTGACCACATCC 342 consensus_6580#0 GAGAGAGAGGGAGAGAGAGAGAGATGCAAGGAGGTTAAATACATTTTGCTAAAAACATAG 457 consensus_6580#3 GTCTTATTTCCAGTGAGACTAAAGTCCAAAAAACTTAAGTTGTTCCTCCTGCACCTCCAG 377 consensus_6580#2 ACACAGACACA--AATCCTTATTCGATGTTGGGGTATG---------------------- 620 consensus_6580#4 ------------------------------------------------------------ consensus_6580#1 ACACACACACACAAATCCTTATTCGATGTTGGGGTATGAGTTGTTGTCTCCAAATTGGGT 402 consensus_6580#0 AAGTTGCTAAGTAAGAAGCAAAGAAAAGAAAGAGAAA-AGCTGTTGAAAAGAGAGGGAGA 516 consensus_6580#3 CAATAGG-AAGCGCAGTGTAAAGTAAAGTA-GAGCCT-AATAATCCAGCACACACCAGTA 434 consensus_6580#2 ------------------------------------------------------------ consensus_6580#4 ------------------------------------------------------------ consensus_6580#1 TTAAATTTATGGATATACAACCAAAACAGATCCACACACACACCCTGTAGAGGAAGGTAG 462 consensus_6580#0 GAGAGTGAGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCA 576 consensus_6580#3 AATACCTCGAA--TAACAAGTGTACGGTGGTTCCCGTT--TTCTTTGGTTTTTTGGTTTG 490 consensus_6580#2 ------------------------------------------------------------ consensus_6580#4 ------------------------------------------------------------ consensus_6580#1 CGATCGTGTAGTACACGTTAGGCTTCTACAAGTATGATAAATACATGAACGTCGATTATA 522 consensus_6580#0 CACACTACC--TACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTG 634 consensus_6580#3 CCTTTTGTT--TCCCA-------------------------------------------- 504 consensus_6580#2 ------------------------------------------------------------ consensus_6580#4 ------------------------------------------------------------ consensus_6580#1 ATTTTCTACCTCATTTATTTGATAATTAAAATACGTTCACAAATGACCCCGTTGCTCGAT 582 consensus_6580#0 AGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGGTTGCTC--- 691 consensus_6580#3 ------------------------------------------------------------ consensus_6580#2 ------------------------------------------------------------ consensus_6580#4 ------------------------------------------------------------ consensus_6580#1 ATGTAAGCGAAGGGGCGCGCACGATGGGTTGAAGTTAATGGTGGTTTTTTATTTTCTTAT 642 consensus_6580#0 ------------------------------------------------------------ consensus_6580#3 ------------------------------------------------------------ consensus_6580#2 ------------------------- consensus_6580#4 ------------------------- consensus_6580#1 TACCAAAAACCAAACAATACATCCA 667 consensus_6580#0 ------------------------- consensus_6580#3 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||