These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1187 fasta sequence [CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTGTAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCACGTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTACAAAGTAAGAGCGACATTCATATTTTCCTATTATTTAGCAGCACCCCAACCGGTATGAGTGTGTTGATGTTCGATAAACTATACAGCTCGTTGCAAACGGTAGTTGCTCTGTTCGGGAGTGCAATGCGCGAAAGGTCAGGGGAGGGATAAAGGTAGATTGTGGAACGACACAAGTGTGTCGCGAGGCAGTGCAAAAACCGTTTTACTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAGGGGTACACAGTAATCCGCATAGTGTAAGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCTGGCAGGTAGCACTGTCGCTGGAGAAACTCGTGACTGATGGATTCTTTCTGGCGATAGCGGTACCTATTTAAAAAAAAAAGATACAAAACAGCAACTCCAGAAATAGACAATATCAAACGGAAATGAACAGTTG] [+] EMBL BX628482 [CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTGTAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCACGTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAANGCCGGGACGTTGACTTGC ] [+] EMBL BX628409 [ AATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTGTAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCACGTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCG ] [+] EMBL BX602871 [ TTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGTGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGCAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCAGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCAGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAATGT ] [+] EMBL BX611992 [ CGGCTCAACTAGCGCGAAACAACAATGTCGAAAGCAAAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCTTCGAGGACCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTACAAAGTAAGAGCGACATTCATATTTTCCTATTATTTAGCAGCACCCCAACCGGTATGAGTGTGTTGATGTTCGATAAACTATACAGCTCGTTGCAAACGGTAGTTGCTCTGTTCGGGAGTGCAATGCGCGAAAGGTCAGGGGAGGGATAAAGGTAGATTGTGGAACGACACAAGTGTGTCGCGAGGCAGTGCAAAAACCGTTTTACTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAGGGGTACACAGTAATCCGCATAGTGTAAGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCTGGCAGGTAGCACTGTCGCTGGAGAAACTCGTGACTGATGGATTCTTTCTGGCGATAGCGGTACCTATTTAAAAAAAAAAGATACAAAACAGCAACTCCAGAAATAGACAATATCAAACGGAAATGAACAGTTG] consensusID : consensus_6581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [CAGAATCGCACGAGGTGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATCTAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGTGGGGCAAAAATCGTCGGAAGTAGCAACAGTAAGAGCGACATTCATATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTTGATGTTCGATTAAGACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCCGGGAAGGTGCCAATGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGCACNCGGACACCAANGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG] [+] EMBL BX469428 [CAGAATCGCACGAGGTGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATCTAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGTGGGGCAAAAATCGTCGGAAGTAGCAACAGTAAGAGCGACATTCATATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTTGATGTTCGATTAAGACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCCGGGAAGGTGCCAATGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGCACNCGGACACCAANGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6581#0 CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTG 60 consensus_6581#1 ------------------------------------------------------------ consensus_6581#0 TAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCAC 120 consensus_6581#1 ------------------------------------------------------------ consensus_6581#0 GTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGAT 180 consensus_6581#1 ------------------------------------------------------------ consensus_6581#0 CGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCAT 240 consensus_6581#1 ---------------------------------------CAGAA------TCGCACGAGG 15 **** ** * consensus_6581#0 CGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCAC 300 consensus_6581#1 TGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTA-GACGGGCTCTTCCGCAC 74 ** ********************* **************** ***************** consensus_6581#0 GGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACG 360 consensus_6581#1 GGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACG 134 ************************************************************ consensus_6581#0 GTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTT 420 consensus_6581#1 GTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTT 194 ************************************************************ consensus_6581#0 CGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGA 480 consensus_6581#1 CGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGA 254 ************************************************************ consensus_6581#0 AGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCAT 540 consensus_6581#1 AGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCAT 314 ************************************************************ consensus_6581#0 CGGCTCAACTAGCGCGAAACAACAACG-TCGAAAGCAGAAAGCATC-AGCATCCTGCCGG 598 consensus_6581#1 CGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATCTAGCATCCTGCCGG 374 *************************** ****************** ************* consensus_6581#0 CGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACG 658 consensus_6581#1 CGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACG 434 ************************************************************ consensus_6581#0 GATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAAT 718 consensus_6581#1 GATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAAT 494 ************************************************************ consensus_6581#0 GGTTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTA-CAA-AGTAAGAGCGACATTCAT 776 consensus_6581#1 GGTTGTGACGATG-TGGGGCAAAAATCGTCGGAAGTAGCAACAGTAAGAGCGACATTCAT 553 ************* *********************** *** ****************** consensus_6581#0 ATTTTCCTATTATTTAGC--AGCACCCCAACCGGT-ATGAGTGTGTTGATGTTCGAT--A 831 consensus_6581#1 ATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTTGATGTTCGATTAA 613 **** *********** ***** **** **** ********************* * consensus_6581#0 AACTAT-ACAG--CTCGTT--GCAAA-CGGTAGTTGC---TCTGTTCGGGAGTG---CAA 879 consensus_6581#1 GACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCCGGGAAGGTGCCAA 673 ***** **** ****** ***** ********** * * * ***** * *** consensus_6581#0 TG-CGCGAAAGGT---CAGGGGAGGGATAAA-GGTAGATTGTGGAACGACACAAGTGTGT 934 consensus_6581#1 TGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGCACNCGGACACCAA 733 ** ********* * ********* ** ****** ** * * * consensus_6581#0 CGCGAGGCAGTGCAAAAACCGTTTTACTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAG 994 consensus_6581#1 NGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG------------------------- 768 * * ** * *** * ** * * consensus_6581#0 GGGTACACAGTAATCCGCATAGTGTAAGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCT 1054 consensus_6581#1 ------------------------------------------------------------ consensus_6581#0 GGCAGGTAGCACTGTCGCTGGAGAAACTCGTGACTGATGGATTCTTTCTGGCGATAGCGG 1114 consensus_6581#1 ------------------------------------------------------------ consensus_6581#0 TACCTATTTAAAAAAAAAAGATACAAAACAGCAACTCCAGAAATAGACAATATCAAACGG 1174 consensus_6581#1 ------------------------------------------------------------ consensus_6581#0 AAATGAACAGTTG 1187 consensus_6581#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||