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Anopheles gambiae
cluster # 6581 cluster # 6581       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6581#0 length = 1187 sequences # 4  
consensus_6581#1 length = 768 sequences # 1  

consensusID : consensus_6581#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1187
fasta sequence
                              [CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTGTAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCACGTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTACAAAGTAAGAGCGACATTCATATTTTCCTATTATTTAGCAGCACCCCAACCGGTATGAGTGTGTTGATGTTCGATAAACTATACAGCTCGTTGCAAACGGTAGTTGCTCTGTTCGGGAGTGCAATGCGCGAAAGGTCAGGGGAGGGATAAAGGTAGATTGTGGAACGACACAAGTGTGTCGCGAGGCAGTGCAAAAACCGTTTTACTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAGGGGTACACAGTAATCCGCATAGTGTAAGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCTGGCAGGTAGCACTGTCGCTGGAGAAACTCGTGACTGATGGATTCTTTCTGGCGATAGCGGTACCTATTTAAAAAAAAAAGATACAAAACAGCAACTCCAGAAATAGACAATATCAAACGGAAATGAACAGTTG]

[+] EMBL BX628482             [CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTGTAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCACGTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAANGCCGGGACGTTGACTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX628409             [                    AATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTGTAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCACGTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX602871             [                                                                                                                                                                         TTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGTGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGCAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCAGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCAGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX611992             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGGCTCAACTAGCGCGAAACAACAATGTCGAAAGCAAAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCTTCGAGGACCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTACAAAGTAAGAGCGACATTCATATTTTCCTATTATTTAGCAGCACCCCAACCGGTATGAGTGTGTTGATGTTCGATAAACTATACAGCTCGTTGCAAACGGTAGTTGCTCTGTTCGGGAGTGCAATGCGCGAAAGGTCAGGGGAGGGATAAAGGTAGATTGTGGAACGACACAAGTGTGTCGCGAGGCAGTGCAAAAACCGTTTTACTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAGGGGTACACAGTAATCCGCATAGTGTAAGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCTGGCAGGTAGCACTGTCGCTGGAGAAACTCGTGACTGATGGATTCTTTCTGGCGATAGCGGTACCTATTTAAAAAAAAAAGATACAAAACAGCAACTCCAGAAATAGACAATATCAAACGGAAATGAACAGTTG]


>consensus_6581#0 CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTG TAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCAC GTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGAT CGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCAT CGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCAC GGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACG GTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTT CGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGA AGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCAT CGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCG AGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGA TCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGG TTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTACAAAGTAAGAGCGACATTCATATTT TCCTATTATTTAGCAGCACCCCAACCGGTATGAGTGTGTTGATGTTCGATAAACTATACA GCTCGTTGCAAACGGTAGTTGCTCTGTTCGGGAGTGCAATGCGCGAAAGGTCAGGGGAGG GATAAAGGTAGATTGTGGAACGACACAAGTGTGTCGCGAGGCAGTGCAAAAACCGTTTTA CTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAGGGGTACACAGTAATCCGCATAGTGTA AGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCTGGCAGGTAGCACTGTCGCTGGAGAAA CTCGTGACTGATGGATTCTTTCTGGCGATAGCGGTACCTATTTAAAAAAAAAAGATACAA AACAGCAACTCCAGAAATAGACAATATCAAACGGAAATGAACAGTTG



consensusID : consensus_6581#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 768
fasta sequence
                              [CAGAATCGCACGAGGTGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATCTAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGTGGGGCAAAAATCGTCGGAAGTAGCAACAGTAAGAGCGACATTCATATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTTGATGTTCGATTAAGACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCCGGGAAGGTGCCAATGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGCACNCGGACACCAANGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG]

[+] EMBL BX469428             [CAGAATCGCACGAGGTGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATCTAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGTGGGGCAAAAATCGTCGGAAGTAGCAACAGTAAGAGCGACATTCATATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTTGATGTTCGATTAAGACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCCGGGAAGGTGCCAATGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGCACNCGGACACCAANGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG]


>consensus_6581#1 CAGAATCGCACGAGGTGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTAGAC GGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCA AAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAA GAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCC AAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGG TGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATC TAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGC GTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAG GAGGCAGACGAAATGGTTGTGACGATGTGGGGCAAAAATCGTCGGAAGTAGCAACAGTAA GAGCGACATTCATATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTT GATGTTCGATTAAGACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCC GGGAAGGTGCCAATGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGC ACNCGGACACCAANGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6581#0      CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTG 60
consensus_6581#1      ------------------------------------------------------------
                                                                                  

consensus_6581#0      TAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCAC 120
consensus_6581#1      ------------------------------------------------------------
                                                                                  

consensus_6581#0      GTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGAT 180
consensus_6581#1      ------------------------------------------------------------
                                                                                  

consensus_6581#0      CGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCAT 240
consensus_6581#1      ---------------------------------------CAGAA------TCGCACGAGG 15
                                                              ****      **   *    

consensus_6581#0      CGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCAC 300
consensus_6581#1      TGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTA-GACGGGCTCTTCCGCAC 74
                       ** ********************* **************** *****************

consensus_6581#0      GGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACG 360
consensus_6581#1      GGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACG 134
                      ************************************************************

consensus_6581#0      GTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTT 420
consensus_6581#1      GTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTT 194
                      ************************************************************

consensus_6581#0      CGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGA 480
consensus_6581#1      CGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGA 254
                      ************************************************************

consensus_6581#0      AGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCAT 540
consensus_6581#1      AGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCAT 314
                      ************************************************************

consensus_6581#0      CGGCTCAACTAGCGCGAAACAACAACG-TCGAAAGCAGAAAGCATC-AGCATCCTGCCGG 598
consensus_6581#1      CGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATCTAGCATCCTGCCGG 374
                      *************************** ****************** *************

consensus_6581#0      CGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACG 658
consensus_6581#1      CGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACG 434
                      ************************************************************

consensus_6581#0      GATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAAT 718
consensus_6581#1      GATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAAT 494
                      ************************************************************

consensus_6581#0      GGTTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTA-CAA-AGTAAGAGCGACATTCAT 776
consensus_6581#1      GGTTGTGACGATG-TGGGGCAAAAATCGTCGGAAGTAGCAACAGTAAGAGCGACATTCAT 553
                      ************* *********************** *** ******************

consensus_6581#0      ATTTTCCTATTATTTAGC--AGCACCCCAACCGGT-ATGAGTGTGTTGATGTTCGAT--A 831
consensus_6581#1      ATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTTGATGTTCGATTAA 613
                      **** ***********    ***** **** **** *********************  *

consensus_6581#0      AACTAT-ACAG--CTCGTT--GCAAA-CGGTAGTTGC---TCTGTTCGGGAGTG---CAA 879
consensus_6581#1      GACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCCGGGAAGGTGCCAA 673
                       ***** ****  ******  ***** **********   * * * *****  *   ***

consensus_6581#0      TG-CGCGAAAGGT---CAGGGGAGGGATAAA-GGTAGATTGTGGAACGACACAAGTGTGT 934
consensus_6581#1      TGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGCACNCGGACACCAA 733
                      ** *********     * ********* ** ****** **  *  *      *      

consensus_6581#0      CGCGAGGCAGTGCAAAAACCGTTTTACTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAG 994
consensus_6581#1      NGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG------------------------- 768
                       *    *    ** *   *** *  **     * *                         

consensus_6581#0      GGGTACACAGTAATCCGCATAGTGTAAGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCT 1054
consensus_6581#1      ------------------------------------------------------------
                                                                                  

consensus_6581#0      GGCAGGTAGCACTGTCGCTGGAGAAACTCGTGACTGATGGATTCTTTCTGGCGATAGCGG 1114
consensus_6581#1      ------------------------------------------------------------
                                                                                  

consensus_6581#0      TACCTATTTAAAAAAAAAAGATACAAAACAGCAACTCCAGAAATAGACAATATCAAACGG 1174
consensus_6581#1      ------------------------------------------------------------
                                                                                  

consensus_6581#0      AAATGAACAGTTG 1187
consensus_6581#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)