These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1359 fasta sequence [TTTTTTATGTTTTGCGCTGCCGGCACGAT-GAAGGAACGAGTTTTAACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAGAGTCGATCCGCCTCGACGGTCGAACGCTGGATGATTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGTACGCATCACCTGCGAGGTGGTGGAACCGAA-GCGATCCGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGAAGGCGGCACCACACTTCGACGGGGGCCGCCAATCGGACGAGTGTGTACAGTTGAACCGTATCCTGGAGCGGGCGCTGAAGGACTCGAACTGTGTCGATCTAGAATCGCTTTTTTGGTGTCGGAGGAAAAGGTGTGGAAGCTGCGCGTAGACGTGACGGTGCTGAACCACGAAGGCAACGCCCAGTGGATTGCTGCTCCATTGCTGCCCTGACCGCGCTGGCACACTTCAAGCGGCCGGACATCACGGTCGACGGCGAGGACGTGATTGTGCACACGATCGAAGAGAAAGATCCGCTGAAAGTGACTCTCTTCCACTATCCGCTGTGCGTGAGCTACGCCATCTTCAACCAGGGCAAGATCGCGATCGCCGATCCCACCTACCTGGAGGAGCGTGTGGCCGAGGCACGGATGGTGTTCGGGCTCAACTCGTACGGCGAGCTGTGTGGGTTGCATCTCGGCGGCACCACGCTGACCAGTGCCGAGCTGCTGCTGCGCACCTCGGCAAAGGCGAGCAAGCGGGCCCGGCTGGTGGTGGAACGCATCAAAGCCGCCATTCAGAAAGATGCCGAGGATCGTGAAAAGGGCCGTCCGGTCGGGGTTTAGCGAGGGCATTGAACGGAACGAGACGACGGTACACGCGCAGGACAGAATGCAGGTGCGGTTGAAACGCTTCAAGCTTCAGATTGAGGGCCAAGAGCGGACTGATCACGATGACGGACAGGATGAGGAAGATGAAGAAGAGGTGGCGCAGGAGGAGATGGAAGCGACCAACGATGCTTCTGCGGATGCGAACGATCCATCGGACGATGTGATGCTGGTGGACGATACGGACGCGGTCGTCGAGGAAGTCGGCGAAACGGCAGCCGTGCTGGTGCCGAAATCCAAGGACGGCGCGAATCAGTGGCTCACCGAGGAGGGACTGGCGGTAGCGAAGGAAAAGACGGGCAAGAAGCGATCGAAAGCGAGCTTGAAGCGCAAGAAGAAGAGCTTACTGTCGAAGCAAGGGACGGGCGAGATGTTGCTGGGCGATAGCAGCGAGGAGGAAACGGTGACGCTAACTTCAACGGATATGTGAATAAA] [+] EMBL AGA280906 [TTTTTTATGTTTTGCGCTGCCGGCACGAT GAAGGAACGAGTTTTAACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAGAGTCGATCCGCCTCGACGGTCGAACGCTGGATGATTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGTACGCATCACCTGCGAGGTGGTGGAACCGAAGGCGATCCGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGAAGGCGGCACCACACTTCGACGGGGGCCGCCAATCGGACGAGTGT ] [+] EMBL CNS09FP7 [ GCACGATAGAAGGAACGAGTTTTAACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAGAGTCGATCCGCCTCGACGGTCGAACGCTCGATGAGTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGCACGCATCACCTGCGAGGTGGTGGAACCGAA GCGACCCGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGATGGCGGCACCACACTTCGACGGAGGCCGCCAATCGGACGAGTGTGTACAGTTGAACCGTATCCTGGAGCGGGCGCTGAAGGACTCGAACTGTGTCGATCTAGAATCGCTTTTTTGGTGTCGGAGGAAAAGGTGTGGAAGCTGCGCGTAGACGTGACGGTGCTGAACCACGAAGGCAACGCCCAGTGGATTGCTGCTCCATTGCTGCCCTGACCGCGCTGGCACACTTCAAGCGGCCGGACATCACGGTCGACGGCGAGGACGTGATTGTGCACACGATCGAAGAGAAAGATCCGCTGAAAGTGACTCTCTTCCACTATCCGCTGTGCGTGAGCTACGCCATCTTCAACCAGGGCAAGATCGCGATCGCCGATCCCACCTACCTGGAGGAGCGTGTGGCCGAGGCACGGATGGTGTTCGGGCTCAACTCGTACGGCGAGCTGTGTGGGTTGCATCTCGGCGGCACCACGCTGACCAGTGCCGAGCTGCTGCTGCGCACCTCGGCAAAGGCGAGCAAGCGGGCCCGGCTGGTGGTGGAACGCATCAAAGCCGCCATTCAGAAAGATGCCGAGGATCGTGAAAAGGGCCGTCCGGTCGGGGTTTAGCGAGGGCATTGAACGGAACGAGACGACGGTACACGCGCAGGACAGAATGCAGGTGCGGTTGAAACGCTTCAAGC ] [-] EMBL CNS09FP8 [ AAGGCAACG CCA TCGATTGCTGCTCCATTGCTGCCCTGACCGCGCTGGCACACTTCAAGCGGCCGGACATCACGGTCGACGGCGAGGACGTGATTGTGCACACGATCGAAGAGAAAGATCCGCTGAAAGTAACTCTCTTCCACTATCCGCTGTGCGTGAG TACGCCATCTTCAACCAGGGCAAGATCGCGATCGCCGATCCCACCTACCTGGAGGAGCGTGTGGCCGAGGCACGGATGGTGTTCGGGCTCAACTCGTACGGCGAGCTGTGTGGGTTGCATCTCGGCGGCACCACGCTGACCAGTGCCGAGCTGCT CTGCGCACCTCGGCAAAGGCGAGCAAGCGGGCCCGGCTGGTGGTGGAACGCATCAAAGCCGCCATTCAGAAAGATGCCGAGGATCGTGAAAAGGGCCGTCCGGTC GGGTTTAGCGAGGGCATTGAACGGAACGAGACGACCCCACACGCGCAGGACAGAATGCAGGTGCGGTTGAAACGCTTCAAGCTTCAGATTGAGGGCCAAGAGCGGACTGATCACGATGACGGACAGGATGAGGAAGATGAAGAAGAGGTGGCGCAGGAGGAGATGGAAGCGACCAACGATGCTTCTGCGGATGCGAACGATCCATCGGACGATGTGATGCTGGTGGACGATACGGACGCGGTCGTCGAGGAAGTCGGCGAAACGGCAGCCGTGCTGGTGCCGAAATCCAAGGACGGCGCGAATCAGTGGCTCACCGAGGAGGGACTGGCGGTAGCGAAGGAAAAGACGGGCAAGAAGCGATCGAAAGCGAGCTTGAAGCGCAAGAAGAAGAGCTTACTGTCGAAGCAAGGGACGGGCGAGATGTTGCTGGGCGATAGCAGCGAGGAGGAAACGGTGACGCTAACTTCAACGGATATGTGAATAAA] consensusID : consensus_6582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [TCGCCAGGNTATTTACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAAGTCGATCCGCCTCGACGGTCGAACGCTGGATGAGTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGCACGCATTAACTGCGAAGTGGTGGGAANCCGAAAGGCGAACCCGGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGATGTGCGGCACCACACTTCGACGGGGGCCGCCAAATCGGACGAGTGTGTTACAGTTGAACCGCATCCTGGAA] [+] EMBL AL932278 [TCGCCAGGNTATTTACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAAGTCGATCCGCCTCGACGGTCGAACGCTGGATGAGTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGCACGCATTAACTGCGAAGTGGTGGGAANCCGAAAGGCGAACCCGGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGATGTGCGGCACCACACTTCGACGGGGGCCGCCAAATCGGACGAGTGTGTTACAGTTGAACCGCATCCTGGAA] consensusID : consensus_6582#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [AGGAGGAAATGGAAGCAACCAATGATGCTTTTGCGGATGCGAACGATCCATCGGACGATGTGATGCTGGTGGACGATACGGACGCGGTAGTCGAGGAAGTCGGCGAAACAGCAGCCGTGCTGGTGCCGAAATCCGGCGCAAATCAGTGGCTCACGGAGGAGGAACTGGCGGCGGCTAAAGAAAAGACGGGCAAGAAGCGATCGAAAGCAAGCTTGAAGCGCAAGAAGAAGAGCTTACTGTTGAAGCAAGGGACAAGCGAAATGTTGCTGGACGATAGCAGC] [-] EMBL AGA282534 [AGGAGGAAATGGAAGCAACCAATGATGCTTTTGCGGATGCGAACGATCCATCGGACGATGTGATGCTGGTGGACGATACGGACGCGGTAGTCGAGGAAGTCGGCGAAACAGCAGCCGTGCTGGTGCCGAAATCCGGCGCAAATCAGTGGCTCACGGAGGAGGAACTGGCGGCGGCTAAAGAAAAGACGGGCAAGAAGCGATCGAAAGCAAGCTTGAAGCGCAAGAAGAAGAGCTTACTGTTGAAGCAAGGGACAAGCGAAATGTTGCTGGACGATAGCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6582#0 TTTTTTATGTTTTGCGCTGCCGGCACGATGAAGGAACGAGTTTTAACCACTAATGAAAAA 60 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 TCCTTCGTTCAAAAGGCCATTCTAGAGTCGATCCGCCTCGACGGTCGAACGCTGGATGAT 120 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 TTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGT 180 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GAGACGCGAGCCCTGGTACGCATCACCTGCGAGGTGGTGGAACCGAAGCGATCCGCCCGA 240 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 ACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGAAGGCGGCACCACACTTCGACG 300 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GGGGCCGCCAATCGGACGAGTGTGTACAGTTGAACCGTATCCTGGAGCGGGCGCTGAAGG 360 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 ACTCGAACTGTGTCGATCTAGAATCGCTTTTTTGGTGTCGGAGGAAAAGGTGTGGAAGCT 420 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GCGCGTAGACGTGACGGTGCTGAACCACGAAGGCAACGCCCAGTGGATTGCTGCTCCATT 480 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GCTGCCCTGACCGCGCTGGCACACTTCAAGCGGCCGGACATCACGGTCGACGGCGAGGAC 540 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GTGATTGTGCACACGATCGAAGAGAAAGATCCGCTGAAAGTGACTCTCTTCCACTATCCG 600 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CTGTGCGTGAGCTACGCCATCTTCAACCAGGGCAAGATCGCGATCGCCGATCCCACCTAC 660 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CTGGAGGAGCGTGTGGCCGAGGCACGGATGGTGTTCGGGCTCAACTCGTACGGCGAGCTG 720 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 TGTGGGTTGCATCTCGGCGGCACCACGCTGACCAGTGCCGAGCTGCTGCTGCGCACCTCG 780 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GCAAAGGCGAGCAAGCGGGCCCGGCTGGTGGTGGAACGCATCAAAGCCGCCATTCAGAAA 840 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GATGCCGAGGATCGTGAAAAGGGCCGTCCGGTCGGGGTTTAGCGAGGGCATTGAACGGAA 900 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 CGAGACGACGGTACACGCGCAGGACAGAATGCAGGTGCGGTTGAAACGCTTCAAGCTTCA 960 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------------------ consensus_6582#0 GATTGAGGGCCAAGAGCGGACTGATCACGATGACGGACAGGATGAGGAAGATGAAGAAGA 1020 consensus_6582#2 ------------------------------------------------------------ consensus_6582#1 ------------------------------------------------TCGCCAGGNTAT 12 consensus_6582#0 GGTGGCGCAGGAGGAGATGGAAGCGACCAACGATGCTTCTGCG--GATGCGAACGATCCA 1078 consensus_6582#2 --------AGGAGGAAATGGAAGCAACCAATGATGCTTTTGCG--GATGCGAACGATCCA 50 consensus_6582#1 TTACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAAGTCGATCCGCCTCGACGG 72 * * ** * ** * ** * * *** ** * consensus_6582#0 TCGGACGATGTGATGCTGGTGGACGATACGGACG-----CGGTCGTCGAGGAAGTCGGCG 1133 consensus_6582#2 TCGGACGATGTGATGCTGGTGGACGATACGGACG-----CGGTAGTCGAGGAAGTCGGCG 105 consensus_6582#1 TCGAACGCTGGATGAGTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGT 132 *** *** ** * * * * * **** *** * * * * * * consensus_6582#0 AAACGGCAGCCGTGCTGGTGCCGAAATCCAAGGACGGCGCGAATCAGTGGCTCACCGAGG 1193 consensus_6582#2 AAACAGCAGCCGTGCTGGTGCCGAAATC------CGGCGCAAATCAGTGGCTCACGGAGG 159 consensus_6582#1 GCACGTCATCCTGGGTGAGACGCGAGCCC-----TGGCACGCATTAACTGCGAAGTGGTG 187 ** ** ** * ** * * * *** * ** * ** * * * consensus_6582#0 AGGGACTGGCGG-------TAGCGAAGGAAAAGACGGGCAAGAAGCGATCG--AAAGCGA 1244 consensus_6582#2 AGGAACTGGCGG-------CGGCTAAAGAAAAGACGGGCAAGAAGCGATCG--AAAGCAA 210 consensus_6582#1 GGAANCCGAAAGGCGAACCCGGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGG 247 * * * * ** * * ** ** ** * consensus_6582#0 GCTTGAAGCGCAAGAAGAAGAGCTTACTGTCGAAGCAAG---GGACGGGCGAGATGTTGC 1301 consensus_6582#2 GCTTGAAGCGCAAGAAGAAGAGCTTACTGTTGAAGCAAG---GGACAAGCGAAATGTTGC 267 consensus_6582#1 GCCCGATGTGCGGCACCACACTTCGACGGGGGCCGCCAAATCGGACGAGTGTGTTACAGT 307 ** ** * ** * * ** * * ** * **** * * * * consensus_6582#0 TGGGCGATAGCAGCGAGGAGGAAACGGTGACGCTAACTTCAACGGATATGTGAATAAA 1359 consensus_6582#2 TGGACGATAGCAGC-------------------------------------------- 281 consensus_6582#1 TGAACCGCATCCTGGAA----------------------------------------- 324 ** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||