These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 950 fasta sequence [TTTGTACAGTTTTCCGCATTCGTCGATTAACAACTTAACATTTAAGATTCGTGCACTCTATACCATCAGAGCAGGAACAGTTGGTTCTTCTCCATTGGCACAGCGCGATTCTTCATTGGGAGGACGGCATACAGAATCCGTTATGTCAAATATTAATCCTGCAGCACAACTAACAGGCGTAGGACTCTTTTCTCCGTTCAGACAAACAAAGTAAGAGACGCAGTCTGCTGGATTGCCCACGTAGTGAATTCCAGTTGGAGGACACGATGTAGGTGATGGTACTCCCT-C-TTCACA-TTCGACAT-TTT--CTT-CCAAGTCGCAC-AGTC-TGG-TTTCAGGATTAAAAAGCAATGTCNGTGCACA-TTCA-CGTT-C-AGATGCT-TCA-CCCATG-AAGCAAATGTAATA-CCTCGAA-CAGTCA-GA-TGG-ATTTGG-CACCGAAATTGGTACGTTGGGATTCACATTATTTGGACAGA-GGGGAATTTCGCAGTTCAC-NTTTTCTGCCAAATCGCATG-TTTTTCTCACAGGATCAANATTGAAGTCCTTGGGCGCATTCACGCAGTTCGCCAATACCTTGAACACAAACCGAATAATATGTGCACTCGCCATCGATTGGCTCAAATGTTGCTTCAAAACTGTCACTTTCAGGGCAGATCAAGCACTTCACATTCCATGGGTGATCACACAGTTGCAATTCTTCGTTGAATACAAATCCAAGTGGGGCATACGCCTGGGAAGGCCTCTCCGCGCAAACACGTGTAGAAAGCGTCACAAGCGGTAAAATCATTTATGAATACGCCGTCTGGCCGAGTTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGACTAGTCTTAAACCTCGGCGATT] [+] EMBL BX626092 [TTTGTACAGTTTTCCGCATTCGTCGATTAACAACTTAACATTTAAGATTCGTGCACTCTATACCATCAGAGCAGGAACAGTTGGTTCTTCTCCATTGGCACAGCGCGATTCTTCATTGGGAGGACGGCATACAGAATCCGTTATGTCAAATATTAATCCTGCAGCACAACTAACAGGCGTAGGACTCTTTTCTCCGTTCAGACAAACAAAGTAAGAGACGCAGTCTGCTGGATTGCCCACGTAGTGAATTCCAGTTGGAGGACACGATGTAGGTGATGGTACTCCCT C TTCACA TTCGACAT TTT CTT CCAAGTCGCAC AGTC TGG TTTCAGGATTAAAAAGCAATGTCNGTGCACA TTCA CGTT C AGATGCT TCA CCCATG AAGCAAATGTAATA CCTCGAA CAGTCA GA TGG ATTTGG CACCGAAATTGGNACGTTGGGATTCACATTATTTGGACAGA GGGGAATTTCGCANTTCAC NTTTTCTGCCAAATCGCATG TTTTCCTCg ] [-] EMBL AL934714 [ ACGATGTA GTGATGGTACTCCCTGCGTTCACAGTNGGACATGTTTCGCTTGCCAAGTCGCACAAGTCGTGGTTTTCAGGAGTTAAAAGCAATGTCGGTGCACATTTCACCGTTNCGAGATGCTGTCACCCCATGAAAGCAAATGTAATACCCTCGAACCAGTCAGGATTGGAATTTGGCCACCGAAATTGGTACGTTGGGATTCACATTATTTGGACAGAGGGGGAATTTCGCAGTTCACAGTTTTCTGCCAAATCGCATG TTTTTTGTACAGGATCAANATTGAAGTCCTTGGGCGCATTCACGCAGTTCGCCAATACCTTGAACACAAACCGAATAATATGTGCACTCGCCATCGATTGGCTCAAATGTTGCTTCAAAACTGTCACTTTCAGGGCAGATCAAGCACTTCACATTCCATGGGTGATCACACAGTTGCAATTCTTCGTTGAATACAAATCCAAGTGGGGCATACGCCTGGGAAGGCCTCTCCGCGCAAACACGTGTAGAAAGCGTCACAAGCGGTAAAATCATTTATGAATACGCCGTCTGGCCGAGTTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGACTAGTCTTAAACCTCGGCGAT ] [-] EMBL AL932861 [ AAGCAAATGTAATA CCTCGAA CAGTCA GA TGG ATTTGG CACCGAAATTGGTACGTTGGGATTCACATTATTTGGACAGA GGGGAATTTCGCAGTTCAC ATTTTCTGCCAAATCGCATGTTTTTTCT ACAGGATCAA ATTGAAGTCCTTGGGCGCATTCACGCAGTTCGCCAATACCTTGAACACAAACCGAATAATATGTGCACTCGCCATCGATTGGCTCAAATGTTGCTTCAAAACTGTCACTTTCAGGGCAGATCAAGCACTTCACATTCCATGGGTGATCACACAGTTGCAATTCTTCGTTGAATACAAATCCAA TGGGGCATACGCCTGGGAAGGCCTCTCCGCGCAAACACGTGTAGAAAGCGTCACAAGCGGTAAAATCATTTATGAATACGCCGTCTGGCCGA TTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGATTAGTCTTTNNCCTCGGCGATT] consensusID : consensus_6586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence [GGGGTAATTCGTTTTGGGGCCTAACTCCGCTGGATANAATACCTTTGTTGGGGGTTAAACCCTGTGGTTTTGGTGAGGAAATGTGTCCCATAGCCGAAAGTTTTTAACTTTTTCGGGGCCGAACCTAAGGTGAAAGGCGGGGTGGTATAATTGNTGTTGCCGCGCCCAATGGCTTGTTTCCTAACCCAATTGGTGCTGTGTCCGTGNGGCCCCTAGTAGAATGTTCCCTGGCCTAAATNTTGTGTTGTTGTTGTGTTGTGCTGAATCCAAGGGGGTATCCAGTATAATTTTGTAGAAGGTTGCCCTTTTTGGGGGGCCGCCNAATTTTCCAATCGGCTAGTTTTTCCGCCGCCCAAAATTAACCCGTTTGGATAACCAACCATATAATCGCGATAGTAAAATTAATGCTGGCTATCCGTCGGTCGCTAGTTCGGGAATGTGGGGGCTGCGCGAAATTGTTTTGTGCTTTTCAAGACTTCGTTGCACCATCTTTTCACGAGGGCACGAGTAACACAGCAGCATCTCGTCAATCAGNTCACCTCGAGTGTGATTGCAATCCAACACAGCCAGCTTAGCTAATTCGTTTCGGATTGACATAGCACACAATGTNCGGGTCGAGTGAGCAACTATCGGCGANGGGCGANAGNGCCGCCGCCGACCGCCAGTAGCTACGGGTAGTAGTAACGCAGTCACCAAAGCGGCGTAATATATCAATTATATGAATATCGGCCTGTCTTGGCCCGAATTGTGCTACTAACGTGTGTTATTCGACANGTGCTGCTTGCAGCAACGAATATTTCAAGCAATACAGCTAAGTAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGATTAGTCTTCCGTCGAAAATGAGTGCAAGCAATGGCTCACAATTTNNACCTCGGG] [-] EMBL AL695486 [GGGGTAATTCGTTTTGGGGCCTAACTCCGCTGGATANAATACCTTTGTTGGGGGTTAAACCCTGTGGTTTTGGTGAGGAAATGTGTCCCATAGCCGAAAGTTTTTAACTTTTTCGGGGCCGAACCTAAGGTGAAAGGCGGGGTGGTATAATTGNTGTTGCCGCGCCCAATGGCTTGTTTCCTAACCCAATTGGTGCTGTGTCCGTGNGGCCCCTAGTAGAATGTTCCCTGGCCTAAATNTTGTGTTGTTGTTGTGTTGTGCTGAATCCAAGGGGGTATCCAGTATAATTTTGTAGAAGGTTGCCCTTTTTGGGGGGCCGCCNAATTTTCCAATCGGCTAGTTTTTCCGCCGCCCAAAATTAACCCGTTTGGATAACCAACCATATAATCGCGATAGTAAAATTAATGCTGGCTATCCGTCGGTCGCTAGTTCGGGAATGTGGGGGCTGCGCGAAATTGTTTTGTGCTTTTCAAGACTTCGTTGCACCATCTTTTCACGAGGGCACGAGTAACACAGCAGCATCTCGTCAATCAGNTCACCTCGAGTGTGATTGCAATCCAACACAGCCAGCTTAGCTAATTCGTTTCGGATTGACATAGCACACAATGTNCGGGTCGAGTGAGCAACTATCGGCGANGGGCGANAGNGCCGCCGCCGACCGCCAGTAGCTACGGGTAGTAGTAACGCAGTCACCAAAGCGGCGTAATATATCAATTATATGAATATCGGCCTGTCTTGGCCCGAATTGTGCTACTAACGTGTGTTATTCGACANGTGCTGCTTGCAGCAACGAATATTTCAAGCAATACAGCTAAGTAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGATTAGTCTTCCGTCGAAAATGAGTGCAAGCAATGGCTCACAATTTNNACCTCGGG] consensusID : consensus_6586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [ANGATTACAATCAGCNNAGTCGCGGGGACANCATNTACACGTCTGCAGATGGNTTNNACCCATGAANGCCATAGTGTTAAANTANCCTCCGTTACCAGTTCAGGATGGGATTTTGGCTCAACAGTATNATTTGTTTACGTNGGGGTACTTTCAAANAGTGTNCTGGTGGCACANGAAGNGGGTAATTNCGTCCNCAGTTTCAAACATGTTTGTTGCTGCCCCAAAACTTCGACAATGNTTGTTTGTTGCAACCAGGGNGATTCAAATATTGGAANNGTCCCTTTGGGNCGCATTTCNACNGGCAGTTCGCCCAATACCGTTTGTACNGCATNACCGTATAAGTANGTGGCANTCGCCAATCGAGTGGTCGTGCAAATCGTGCTTCCAGAAAACTGTCACCTTTTCAGGCCAGATCAAGCACTTCACATTCCATGGGGATCACCAGTGCATTTCGTGAAACNNCCCTGGGCAACGCTGGGAAGCCTTCCGCGCAAACACGTGTAGAAAGCTCACAACGGTAAAATCATTTATGAATACGCCGTCTGGCCGATTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTGCCAGACAGAAGTTATAGTTACGATGCTCCAAACTCTAGCACTGATAGTCTTCCGTNACCG] [-] EMBL AL696126 [ANGATTACAATCAGCNNAGTCGCGGGGACANCATNTACACGTCTGCAGATGGNTTNNACCCATGAANGCCATAGTGTTAAANTANCCTCCGTTACCAGTTCAGGATGGGATTTTGGCTCAACAGTATNATTTGTTTACGTNGGGGTACTTTCAAANAGTGTNCTGGTGGCACANGAAGNGGGTAATTNCGTCCNCAGTTTCAAACATGTTTGTTGCTGCCCCAAAACTTCGACAATGNTTGTTTGTTGCAACCAGGGNGATTCAAATATTGGAANNGTCCCTTTGGGNCGCATTTCNACNGGCAGTTCGCCCAATACCGTTTGTACNGCATNACCGTATAAGTANGTGGCANTCGCCAATCGAGTGGTCGTGCAAATCGTGCTTCCAGAAAACTGTCACCTTTTCAGGCCAGATCAAGCACTTCACATTCCATGGGGATCACCAGTGCATTTCGTGAAACNNCCCTGGGCAACGCTGGGAAGCCTTCCGCGCAAACACGTGTAGAAAGCTCACAACGGTAAAATCATTTATGAATACGCCGTCTGGCCGATTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTGCCAGACAGAAGTTATAGTTACGATGCTCCAAACTCTAGCACTGATAGTCTTCCGTNACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6586#0 TTTGTACAGTTTTCCGCATTCGTCGATTAACAACTTAACATTTAAGATTCGTGCACTCTA 60 consensus_6586#2 ------------------------------------------------------------ consensus_6586#1 ------------------------------------------------------------ consensus_6586#0 TACCATCAGAGCAGGAACAGTTGGTTCTTCTCCATTGGCACAGCGCGATTCTTCATTGGG 120 consensus_6586#2 ------------------------------------------------------------ consensus_6586#1 ----------------GGGGTAATTCGTTTTGGGGCCTAACTCCGCTGGATANAATACCT 44 consensus_6586#0 AGGACGGCATACAGAATCCGTTATGTCAAATATTAATCCTGCAGCACAACTAACAGGCGT 180 consensus_6586#2 ------------------------------------------------------------ consensus_6586#1 TTGTTGGGGGTTAAACCCTGTGGTTTTGGTGAGGAAATGTGTCCCATAGCCGAAAGTTTT 104 consensus_6586#0 AGGACTCTTTT---CTCCGTTCAGACAAACAAAGTAAGAGACGCAGT--CTGCTGGATTG 235 consensus_6586#2 ------------------------------------ANGATTACAAT--CAGCNNAGTCG 22 consensus_6586#1 TAACTTTTTCGGGGCCGAACCTAAGGTGAAAGGCGGGGTGGTATAATTGNTGTTGCCGCG 164 * * * * consensus_6586#0 CCCACGTAGTGAATTCCAGTTGGAGGACACGATGTAGGTGATGGTACTCCCTCTTCACAT 295 consensus_6586#2 CGGGGACANCATNTACACGTCTGCAGATGGNTTNNACCCATGAANGCCATAGTGTTAAAN 82 consensus_6586#1 CCCAATGGCTTGTTTCCTAACCCAATTGGTGCTGTGTCCGTGNGGCCCCTAGTAGAATGT 224 * * * * * * consensus_6586#0 TCG--ACATTTTCTTCCAAGTCGCACAGTCTGGTTTCAGGATTAAAAAGCAATGTCN-GT 352 consensus_6586#2 T----ANCCTCCGTTACCAGTT---CAGGATGGGATTTTGGCTCAACAGTATNATTT-GT 134 consensus_6586#1 TCCCTGGCCTAAATNTTGTGTTGT-TGTTGTGTTGTGCTGAATCCAAGGGGGTATCCAGT 283 * * * ** ** * * * * * * ** consensus_6586#0 GCACATTCACGTTCAGATGCTTCACCCATGAAGCAAATGTAATACCTCGAACAGTCAGAT 412 consensus_6586#2 ------TTACGTNGGGGTACTTT-CAAANAGTGTNCTGGTGGCACANGAAGNGGGTAATT 187 consensus_6586#1 ATAATTTTGTAGAAGGTTGCCCTTTTTGGGGGGCCGCCN-AATTTTCCAATCGGCTAGTT 342 * * * * * * * * * consensus_6586#0 GGATTTGGCACCG-AAATTGGTACGTTGGGATTCACATTATTTGGACAGAGGGGAATT-T 470 consensus_6586#2 NCGTCCNCAGTTTCAAACATGTTTGTTGCTGCCC-CAAAACTTCGACAATGNTTGTTTGT 246 consensus_6586#1 TT-TCCGCCGCCCAAAATTAACCCGTTTGGATAACCAACCATATAATCGCGATAGTAAAA 401 * *** *** ** * * * consensus_6586#0 CGCAGTTCACNTTTTCTGCCAAATCGCATGTTTTTCTCACAGGATCAANATTGAAGTCCT 530 consensus_6586#2 TGCAACCAGGGNGATT---CAAATATTGGAANNGTCCCTTTGGGNCG-CATT----TCNA 298 consensus_6586#1 T-TAATGCTGGCTATCCGTCGGTCGCTAGTTCGGGAATGTGGGGGCTGCGCG-AAATTGT 459 * * * ** * * consensus_6586#0 TGGGCGCATTCACGCAGT-TCGCCAATACCTTGAACACAAACCGAATAATATGTG-CACT 588 consensus_6586#2 CNGGCA-GTTCGCCCAATACCGTTTGTACN----GCATNACCGTATAAGTANGTGGCANT 353 consensus_6586#1 TTTGTG-CTTTTCAAGACTTCGTT-GCACC----ATCTTTTCACGAGGGCACGAGTAACA 513 * ** * ** ** * * * * * consensus_6586#0 CGCCA-TCGATTGGCT---CAAATGTTGCTTC---AAAACTGTCAC--TTTCAGGGCAGA 639 consensus_6586#2 CGCCAATCGAGTGGTCGTGCAAATCGTGCTTCCAGAAAACTGTCACCTTTTCAGGCCAGA 413 consensus_6586#1 CAGCA-GCATCTCGTCAATCAGNTCAC-CTCGAGTGTGATTGCAATCCAACACAGCCAGC 571 * ** * * * ** * ** * ** * * *** consensus_6586#0 TCAAGCACTTCACATTCCATGGGTG-ATCACACAGTTGCAATTCTTCGTTGAATACAAAT 698 consensus_6586#2 TCAAGCACTTCACATTCCATGGG-G-ATCAC-CAGT-GCATTTCGT----------GAAA 459 consensus_6586#1 TTAGCTAATTCGTTTCGGATTGACATAGCACACAAT-GTNCGGGTCGAGTGAGCAACTAT 630 * * * *** * ** * * *** ** * * * consensus_6586#0 CCAAGTGGGGCATACGCCTGGGAAGGCCTCTCCGCGCAAACACGTGTAG----AAAGCG- 753 consensus_6586#2 CNNCCCTGGGCA-ACGC-TGGGAAG--CCTTCCGCGCAAACACGTGTAG----AAAGC-- 509 consensus_6586#1 CGGCGANGGGCGANAGNGCCGCCGCCGACCGCCA-GTAGCTACGGGTAGTAGTAACGCAG 689 * **** * * ** * * *** **** ** ** consensus_6586#0 TCAC--AAGCGGTAAAAT----CATTTAT--GAATACG---CCGTCTGG--CCGAGTTG- 799 consensus_6586#2 TCAC--AA-CGGTAAAAT----CATTTAT--GAATACG---CCGTCTGG--CCGA-TTG- 553 consensus_6586#1 TCACCAAAGCGGCGTAATATATCAATTATATGAATATCGGCCTGTCTTGGCCCGAATTGT 749 **** ** *** *** ** **** ***** * **** * **** *** consensus_6586#0 GCA--CAACGTGTGTTATTCGACAG-TGCTGCTTGCAGCAAC-AATATTTCAAGCAATAC 855 consensus_6586#2 GCA--CAACGTGTGTTATTCGACAG-TGCTGCTTGCAGCAAC-AATATTTCAAGCAATAC 609 consensus_6586#1 GCTACTAACGTGTGTTATTCGACANGTGCTGCTTGCAGCAACGAATATTTCAAGCAATAC 809 ** ****************** **************** ***************** consensus_6586#0 AGCTAA-TAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAA 914 consensus_6586#2 AGCTAA-TAGCCACACTCGATTCATGT-GCCAGACAGAAGTTATAGTTACGATGCTCCAA 667 consensus_6586#1 AGCTAAGTAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAA 869 ****** ******************** *********************** **** *** consensus_6586#0 AACTCTAGCACTGACTAGTCTTAAACCTCGGCGATT------------------------ 950 consensus_6586#2 A-CTCTAGCACTGA-TAGTCTTCCGTNACCG----------------------------- 696 consensus_6586#1 AACTCTAGCACTGATTAGTCTTCCGTCGAAAATGAGTGCAAGCAATGGCTCACAATTTNN 929 * ************ ******* consensus_6586#0 -------- consensus_6586#2 -------- consensus_6586#1 ACCTCGGG 937 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||