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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 950 fasta sequence
[TTTGTACAGTTTTCCGCATTCGTCGATTAACAACTTAACATTTAAGATTCGTGCACTCTATACCATCAGAGCAGGAACAGTTGGTTCTTCTCCATTGGCACAGCGCGATTCTTCATTGGGAGGACGGCATACAGAATCCGTTATGTCAAATATTAATCCTGCAGCACAACTAACAGGCGTAGGACTCTTTTCTCCGTTCAGACAAACAAAGTAAGAGACGCAGTCTGCTGGATTGCCCACGTAGTGAATTCCAGTTGGAGGACACGATGTAGGTGATGGTACTCCCT-C-TTCACA-TTCGACAT-TTT--CTT-CCAAGTCGCAC-AGTC-TGG-TTTCAGGATTAAAAAGCAATGTCNGTGCACA-TTCA-CGTT-C-AGATGCT-TCA-CCCATG-AAGCAAATGTAATA-CCTCGAA-CAGTCA-GA-TGG-ATTTGG-CACCGAAATTGGTACGTTGGGATTCACATTATTTGGACAGA-GGGGAATTTCGCAGTTCAC-NTTTTCTGCCAAATCGCATG-TTTTTCTCACAGGATCAANATTGAAGTCCTTGGGCGCATTCACGCAGTTCGCCAATACCTTGAACACAAACCGAATAATATGTGCACTCGCCATCGATTGGCTCAAATGTTGCTTCAAAACTGTCACTTTCAGGGCAGATCAAGCACTTCACATTCCATGGGTGATCACACAGTTGCAATTCTTCGTTGAATACAAATCCAAGTGGGGCATACGCCTGGGAAGGCCTCTCCGCGCAAACACGTGTAGAAAGCGTCACAAGCGGTAAAATCATTTATGAATACGCCGTCTGGCCGAGTTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGACTAGTCTTAAACCTCGGCGATT]
[+] EMBL BX626092 [TTTGTACAGTTTTCCGCATTCGTCGATTAACAACTTAACATTTAAGATTCGTGCACTCTATACCATCAGAGCAGGAACAGTTGGTTCTTCTCCATTGGCACAGCGCGATTCTTCATTGGGAGGACGGCATACAGAATCCGTTATGTCAAATATTAATCCTGCAGCACAACTAACAGGCGTAGGACTCTTTTCTCCGTTCAGACAAACAAAGTAAGAGACGCAGTCTGCTGGATTGCCCACGTAGTGAATTCCAGTTGGAGGACACGATGTAGGTGATGGTACTCCCT C TTCACA TTCGACAT TTT CTT CCAAGTCGCAC AGTC TGG TTTCAGGATTAAAAAGCAATGTCNGTGCACA TTCA CGTT C AGATGCT TCA CCCATG AAGCAAATGTAATA CCTCGAA CAGTCA GA TGG ATTTGG CACCGAAATTGGNACGTTGGGATTCACATTATTTGGACAGA GGGGAATTTCGCANTTCAC NTTTTCTGCCAAATCGCATG TTTTCCTCg ]
[-] EMBL AL934714 [ ACGATGTA GTGATGGTACTCCCTGCGTTCACAGTNGGACATGTTTCGCTTGCCAAGTCGCACAAGTCGTGGTTTTCAGGAGTTAAAAGCAATGTCGGTGCACATTTCACCGTTNCGAGATGCTGTCACCCCATGAAAGCAAATGTAATACCCTCGAACCAGTCAGGATTGGAATTTGGCCACCGAAATTGGTACGTTGGGATTCACATTATTTGGACAGAGGGGGAATTTCGCAGTTCACAGTTTTCTGCCAAATCGCATG TTTTTTGTACAGGATCAANATTGAAGTCCTTGGGCGCATTCACGCAGTTCGCCAATACCTTGAACACAAACCGAATAATATGTGCACTCGCCATCGATTGGCTCAAATGTTGCTTCAAAACTGTCACTTTCAGGGCAGATCAAGCACTTCACATTCCATGGGTGATCACACAGTTGCAATTCTTCGTTGAATACAAATCCAAGTGGGGCATACGCCTGGGAAGGCCTCTCCGCGCAAACACGTGTAGAAAGCGTCACAAGCGGTAAAATCATTTATGAATACGCCGTCTGGCCGAGTTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGACTAGTCTTAAACCTCGGCGAT ]
[-] EMBL AL932861 [ AAGCAAATGTAATA CCTCGAA CAGTCA GA TGG ATTTGG CACCGAAATTGGTACGTTGGGATTCACATTATTTGGACAGA GGGGAATTTCGCAGTTCAC ATTTTCTGCCAAATCGCATGTTTTTTCT ACAGGATCAA ATTGAAGTCCTTGGGCGCATTCACGCAGTTCGCCAATACCTTGAACACAAACCGAATAATATGTGCACTCGCCATCGATTGGCTCAAATGTTGCTTCAAAACTGTCACTTTCAGGGCAGATCAAGCACTTCACATTCCATGGGTGATCACACAGTTGCAATTCTTCGTTGAATACAAATCCAA TGGGGCATACGCCTGGGAAGGCCTCTCCGCGCAAACACGTGTAGAAAGCGTCACAAGCGGTAAAATCATTTATGAATACGCCGTCTGGCCGA TTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGATTAGTCTTTNNCCTCGGCGATT]
consensusID : consensus_6586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence
[GGGGTAATTCGTTTTGGGGCCTAACTCCGCTGGATANAATACCTTTGTTGGGGGTTAAACCCTGTGGTTTTGGTGAGGAAATGTGTCCCATAGCCGAAAGTTTTTAACTTTTTCGGGGCCGAACCTAAGGTGAAAGGCGGGGTGGTATAATTGNTGTTGCCGCGCCCAATGGCTTGTTTCCTAACCCAATTGGTGCTGTGTCCGTGNGGCCCCTAGTAGAATGTTCCCTGGCCTAAATNTTGTGTTGTTGTTGTGTTGTGCTGAATCCAAGGGGGTATCCAGTATAATTTTGTAGAAGGTTGCCCTTTTTGGGGGGCCGCCNAATTTTCCAATCGGCTAGTTTTTCCGCCGCCCAAAATTAACCCGTTTGGATAACCAACCATATAATCGCGATAGTAAAATTAATGCTGGCTATCCGTCGGTCGCTAGTTCGGGAATGTGGGGGCTGCGCGAAATTGTTTTGTGCTTTTCAAGACTTCGTTGCACCATCTTTTCACGAGGGCACGAGTAACACAGCAGCATCTCGTCAATCAGNTCACCTCGAGTGTGATTGCAATCCAACACAGCCAGCTTAGCTAATTCGTTTCGGATTGACATAGCACACAATGTNCGGGTCGAGTGAGCAACTATCGGCGANGGGCGANAGNGCCGCCGCCGACCGCCAGTAGCTACGGGTAGTAGTAACGCAGTCACCAAAGCGGCGTAATATATCAATTATATGAATATCGGCCTGTCTTGGCCCGAATTGTGCTACTAACGTGTGTTATTCGACANGTGCTGCTTGCAGCAACGAATATTTCAAGCAATACAGCTAAGTAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGATTAGTCTTCCGTCGAAAATGAGTGCAAGCAATGGCTCACAATTTNNACCTCGGG]
[-] EMBL AL695486 [GGGGTAATTCGTTTTGGGGCCTAACTCCGCTGGATANAATACCTTTGTTGGGGGTTAAACCCTGTGGTTTTGGTGAGGAAATGTGTCCCATAGCCGAAAGTTTTTAACTTTTTCGGGGCCGAACCTAAGGTGAAAGGCGGGGTGGTATAATTGNTGTTGCCGCGCCCAATGGCTTGTTTCCTAACCCAATTGGTGCTGTGTCCGTGNGGCCCCTAGTAGAATGTTCCCTGGCCTAAATNTTGTGTTGTTGTTGTGTTGTGCTGAATCCAAGGGGGTATCCAGTATAATTTTGTAGAAGGTTGCCCTTTTTGGGGGGCCGCCNAATTTTCCAATCGGCTAGTTTTTCCGCCGCCCAAAATTAACCCGTTTGGATAACCAACCATATAATCGCGATAGTAAAATTAATGCTGGCTATCCGTCGGTCGCTAGTTCGGGAATGTGGGGGCTGCGCGAAATTGTTTTGTGCTTTTCAAGACTTCGTTGCACCATCTTTTCACGAGGGCACGAGTAACACAGCAGCATCTCGTCAATCAGNTCACCTCGAGTGTGATTGCAATCCAACACAGCCAGCTTAGCTAATTCGTTTCGGATTGACATAGCACACAATGTNCGGGTCGAGTGAGCAACTATCGGCGANGGGCGANAGNGCCGCCGCCGACCGCCAGTAGCTACGGGTAGTAGTAACGCAGTCACCAAAGCGGCGTAATATATCAATTATATGAATATCGGCCTGTCTTGGCCCGAATTGTGCTACTAACGTGTGTTATTCGACANGTGCTGCTTGCAGCAACGAATATTTCAAGCAATACAGCTAAGTAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAAAACTCTAGCACTGATTAGTCTTCCGTCGAAAATGAGTGCAAGCAATGGCTCACAATTTNNACCTCGGG]
consensusID : consensus_6586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[ANGATTACAATCAGCNNAGTCGCGGGGACANCATNTACACGTCTGCAGATGGNTTNNACCCATGAANGCCATAGTGTTAAANTANCCTCCGTTACCAGTTCAGGATGGGATTTTGGCTCAACAGTATNATTTGTTTACGTNGGGGTACTTTCAAANAGTGTNCTGGTGGCACANGAAGNGGGTAATTNCGTCCNCAGTTTCAAACATGTTTGTTGCTGCCCCAAAACTTCGACAATGNTTGTTTGTTGCAACCAGGGNGATTCAAATATTGGAANNGTCCCTTTGGGNCGCATTTCNACNGGCAGTTCGCCCAATACCGTTTGTACNGCATNACCGTATAAGTANGTGGCANTCGCCAATCGAGTGGTCGTGCAAATCGTGCTTCCAGAAAACTGTCACCTTTTCAGGCCAGATCAAGCACTTCACATTCCATGGGGATCACCAGTGCATTTCGTGAAACNNCCCTGGGCAACGCTGGGAAGCCTTCCGCGCAAACACGTGTAGAAAGCTCACAACGGTAAAATCATTTATGAATACGCCGTCTGGCCGATTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTGCCAGACAGAAGTTATAGTTACGATGCTCCAAACTCTAGCACTGATAGTCTTCCGTNACCG]
[-] EMBL AL696126 [ANGATTACAATCAGCNNAGTCGCGGGGACANCATNTACACGTCTGCAGATGGNTTNNACCCATGAANGCCATAGTGTTAAANTANCCTCCGTTACCAGTTCAGGATGGGATTTTGGCTCAACAGTATNATTTGTTTACGTNGGGGTACTTTCAAANAGTGTNCTGGTGGCACANGAAGNGGGTAATTNCGTCCNCAGTTTCAAACATGTTTGTTGCTGCCCCAAAACTTCGACAATGNTTGTTTGTTGCAACCAGGGNGATTCAAATATTGGAANNGTCCCTTTGGGNCGCATTTCNACNGGCAGTTCGCCCAATACCGTTTGTACNGCATNACCGTATAAGTANGTGGCANTCGCCAATCGAGTGGTCGTGCAAATCGTGCTTCCAGAAAACTGTCACCTTTTCAGGCCAGATCAAGCACTTCACATTCCATGGGGATCACCAGTGCATTTCGTGAAACNNCCCTGGGCAACGCTGGGAAGCCTTCCGCGCAAACACGTGTAGAAAGCTCACAACGGTAAAATCATTTATGAATACGCCGTCTGGCCGATTGGCACAACGTGTGTTATTCGACAGTGCTGCTTGCAGCAACAATATTTCAAGCAATACAGCTAATAGCCACACTCGATTCATGTGCCAGACAGAAGTTATAGTTACGATGCTCCAAACTCTAGCACTGATAGTCTTCCGTNACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6586#0 TTTGTACAGTTTTCCGCATTCGTCGATTAACAACTTAACATTTAAGATTCGTGCACTCTA 60
consensus_6586#2 ------------------------------------------------------------
consensus_6586#1 ------------------------------------------------------------
consensus_6586#0 TACCATCAGAGCAGGAACAGTTGGTTCTTCTCCATTGGCACAGCGCGATTCTTCATTGGG 120
consensus_6586#2 ------------------------------------------------------------
consensus_6586#1 ----------------GGGGTAATTCGTTTTGGGGCCTAACTCCGCTGGATANAATACCT 44
consensus_6586#0 AGGACGGCATACAGAATCCGTTATGTCAAATATTAATCCTGCAGCACAACTAACAGGCGT 180
consensus_6586#2 ------------------------------------------------------------
consensus_6586#1 TTGTTGGGGGTTAAACCCTGTGGTTTTGGTGAGGAAATGTGTCCCATAGCCGAAAGTTTT 104
consensus_6586#0 AGGACTCTTTT---CTCCGTTCAGACAAACAAAGTAAGAGACGCAGT--CTGCTGGATTG 235
consensus_6586#2 ------------------------------------ANGATTACAAT--CAGCNNAGTCG 22
consensus_6586#1 TAACTTTTTCGGGGCCGAACCTAAGGTGAAAGGCGGGGTGGTATAATTGNTGTTGCCGCG 164
* * * *
consensus_6586#0 CCCACGTAGTGAATTCCAGTTGGAGGACACGATGTAGGTGATGGTACTCCCTCTTCACAT 295
consensus_6586#2 CGGGGACANCATNTACACGTCTGCAGATGGNTTNNACCCATGAANGCCATAGTGTTAAAN 82
consensus_6586#1 CCCAATGGCTTGTTTCCTAACCCAATTGGTGCTGTGTCCGTGNGGCCCCTAGTAGAATGT 224
* * * * * *
consensus_6586#0 TCG--ACATTTTCTTCCAAGTCGCACAGTCTGGTTTCAGGATTAAAAAGCAATGTCN-GT 352
consensus_6586#2 T----ANCCTCCGTTACCAGTT---CAGGATGGGATTTTGGCTCAACAGTATNATTT-GT 134
consensus_6586#1 TCCCTGGCCTAAATNTTGTGTTGT-TGTTGTGTTGTGCTGAATCCAAGGGGGTATCCAGT 283
* * * ** ** * * * * * * **
consensus_6586#0 GCACATTCACGTTCAGATGCTTCACCCATGAAGCAAATGTAATACCTCGAACAGTCAGAT 412
consensus_6586#2 ------TTACGTNGGGGTACTTT-CAAANAGTGTNCTGGTGGCACANGAAGNGGGTAATT 187
consensus_6586#1 ATAATTTTGTAGAAGGTTGCCCTTTTTGGGGGGCCGCCN-AATTTTCCAATCGGCTAGTT 342
* * * * * * * * *
consensus_6586#0 GGATTTGGCACCG-AAATTGGTACGTTGGGATTCACATTATTTGGACAGAGGGGAATT-T 470
consensus_6586#2 NCGTCCNCAGTTTCAAACATGTTTGTTGCTGCCC-CAAAACTTCGACAATGNTTGTTTGT 246
consensus_6586#1 TT-TCCGCCGCCCAAAATTAACCCGTTTGGATAACCAACCATATAATCGCGATAGTAAAA 401
* *** *** ** * * *
consensus_6586#0 CGCAGTTCACNTTTTCTGCCAAATCGCATGTTTTTCTCACAGGATCAANATTGAAGTCCT 530
consensus_6586#2 TGCAACCAGGGNGATT---CAAATATTGGAANNGTCCCTTTGGGNCG-CATT----TCNA 298
consensus_6586#1 T-TAATGCTGGCTATCCGTCGGTCGCTAGTTCGGGAATGTGGGGGCTGCGCG-AAATTGT 459
* * * ** * *
consensus_6586#0 TGGGCGCATTCACGCAGT-TCGCCAATACCTTGAACACAAACCGAATAATATGTG-CACT 588
consensus_6586#2 CNGGCA-GTTCGCCCAATACCGTTTGTACN----GCATNACCGTATAAGTANGTGGCANT 353
consensus_6586#1 TTTGTG-CTTTTCAAGACTTCGTT-GCACC----ATCTTTTCACGAGGGCACGAGTAACA 513
* ** * ** ** * * * * *
consensus_6586#0 CGCCA-TCGATTGGCT---CAAATGTTGCTTC---AAAACTGTCAC--TTTCAGGGCAGA 639
consensus_6586#2 CGCCAATCGAGTGGTCGTGCAAATCGTGCTTCCAGAAAACTGTCACCTTTTCAGGCCAGA 413
consensus_6586#1 CAGCA-GCATCTCGTCAATCAGNTCAC-CTCGAGTGTGATTGCAATCCAACACAGCCAGC 571
* ** * * * ** * ** * ** * * ***
consensus_6586#0 TCAAGCACTTCACATTCCATGGGTG-ATCACACAGTTGCAATTCTTCGTTGAATACAAAT 698
consensus_6586#2 TCAAGCACTTCACATTCCATGGG-G-ATCAC-CAGT-GCATTTCGT----------GAAA 459
consensus_6586#1 TTAGCTAATTCGTTTCGGATTGACATAGCACACAAT-GTNCGGGTCGAGTGAGCAACTAT 630
* * * *** * ** * * *** ** * * *
consensus_6586#0 CCAAGTGGGGCATACGCCTGGGAAGGCCTCTCCGCGCAAACACGTGTAG----AAAGCG- 753
consensus_6586#2 CNNCCCTGGGCA-ACGC-TGGGAAG--CCTTCCGCGCAAACACGTGTAG----AAAGC-- 509
consensus_6586#1 CGGCGANGGGCGANAGNGCCGCCGCCGACCGCCA-GTAGCTACGGGTAGTAGTAACGCAG 689
* **** * * ** * * *** **** ** **
consensus_6586#0 TCAC--AAGCGGTAAAAT----CATTTAT--GAATACG---CCGTCTGG--CCGAGTTG- 799
consensus_6586#2 TCAC--AA-CGGTAAAAT----CATTTAT--GAATACG---CCGTCTGG--CCGA-TTG- 553
consensus_6586#1 TCACCAAAGCGGCGTAATATATCAATTATATGAATATCGGCCTGTCTTGGCCCGAATTGT 749
**** ** *** *** ** **** ***** * **** * **** ***
consensus_6586#0 GCA--CAACGTGTGTTATTCGACAG-TGCTGCTTGCAGCAAC-AATATTTCAAGCAATAC 855
consensus_6586#2 GCA--CAACGTGTGTTATTCGACAG-TGCTGCTTGCAGCAAC-AATATTTCAAGCAATAC 609
consensus_6586#1 GCTACTAACGTGTGTTATTCGACANGTGCTGCTTGCAGCAACGAATATTTCAAGCAATAC 809
** ****************** **************** *****************
consensus_6586#0 AGCTAA-TAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAA 914
consensus_6586#2 AGCTAA-TAGCCACACTCGATTCATGT-GCCAGACAGAAGTTATAGTTACGATGCTCCAA 667
consensus_6586#1 AGCTAAGTAGCCACACTCGATTCATGTTGCCAGACAGAAGTTATAGTTACGCTGCTGCAA 869
****** ******************** *********************** **** ***
consensus_6586#0 AACTCTAGCACTGACTAGTCTTAAACCTCGGCGATT------------------------ 950
consensus_6586#2 A-CTCTAGCACTGA-TAGTCTTCCGTNACCG----------------------------- 696
consensus_6586#1 AACTCTAGCACTGATTAGTCTTCCGTCGAAAATGAGTGCAAGCAATGGCTCACAATTTNN 929
* ************ *******
consensus_6586#0 --------
consensus_6586#2 --------
consensus_6586#1 ACCTCGGG 937
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||