These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 919 fasta sequence [CCGGCGCCCAATCGTGTCAGTACTATCCGGCCATCGCTCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAAAATATCCGAACACACGCAGCGTTCGTCGGTGTTATATTGATTCTATATGCGATATTCTCTATCCTTACTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATCGGACAAAATAGATTATGAAGTGAAAGCTGAAGCATTCAGTCCTAAGAGCAAGAGGTCAATTGATGCGGGGTGGTCATTCAATGCAGTGGGCGATGGTGGATCCGGCACAACCAGGTTGCGGAGGTCAATTCGAAAACTGTTTTCTTCGAAGAGTAAAAAGAAAAAGGTTAATACAATGTTCTCGGCATTCGACAATGCCGGAGCCAAAGAAGCCATCAGCCACGAGATCAACCTGGATATCAACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCATCCAGGAGATCAACCAGGAGATCAACCTGGAGATCATGTTCATCAAAGCAGGCTTCCTCATCATGAGTATTGTGAGTTCGTTCATTACAATTATGTACTGGATCGCGTATCTCAAGCGTCAACA-TTTGTTTCTCGTAATATTCATCGGACTTATGACCATTTGCTTTCGCGGGTCTATTCCATCGGGGATGTTCGTCATGATACAGCAGCAGAAATTCATCTGGGCGTGCGCAATGCTATTCGGATTCCTCTTGAACGGATATGTGCTGACGGTGGCGCTGCAACTACTTTCATATATTGAATCTACCCGGCGACAACACAGTTACGGTGCCAAGATGTGTATGCTTCCAGTGAAGTAATTAGTTACAGATTTGCAACGCTATTCTTGAATATATGAAACATGTTCTCGCCATTGGACTTTGAT] [+] EMBL BM645237 [CCGGCGCCCAATCGTGTCAGTACTATCCGGCCATCGCTCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAAAATATCCGAACACACGCAGCGTTCGTCGGTGTTATATTGATTCTATATGCGATATTCTCTATCCTTACTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATCGGACAAAATAGATTATGAAGTGAAAGCTGAAGCATTCAGTCCTAAGAGCAAGAGGTCAATTGATGCGGGGTGGTCATTCAATGCAGTGGGCGATGGTGGATCCGGCACAACCAGGTTGCGGAGGTCAATTCGAAAACTGTTTTCTTCGAAGAGTAAAAAGAAAAAGGTTAATACAATGTTCTCGGCATTCGACAATGCCGGAGCCAAAGAAGCCATCAGCCACGAGATCAACCTGGATATCAACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCATCCAGGAGATCAACCAGGAGATCAACCTGGAGATCATGTTCATCAAAGCAGGCTTCCTCATCATGAGTATTGTGAGTTCGTTCATTACAATTATGTACTGGATCGCGTATCTCAAGCGTCAACATTTTGTTTCTCGTAA ] [+] EMBL BM646506 [ ccgCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAAAATATCCGAACACACGCAGCGTTCGTCGGTGTTATATTGATTCTATATGCGATATTCTCTATCCTTACTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATCGGACAAAATAGATTATGAAGTGAAAGCTGAAGCATTCAGTCCTAAGAGCAAGAGGTCAATTGATGCGGGGTGGTCATTCAATGCAGTGGGCGATGGTGGATCCGGCACAACCAGGTTGCGGAGGTCAATTCGAAAACTGTTTTCTTCGAAGAGTAAAAAGAAAAAGGTTAATACAATGTTCTCGGCATTCGACAATGCCGGAGCCAAAGAAGCCATCAGCCACGAGATCAACCTGGATATCAACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCATCCAGGAGATCAACCAGGAGATCAACCTGGAGATCATGTTCATCAAAGCAGGCTTCCTCATCATGAGTATTGTGAGTTCGTTCATTACAATTATGTACTGGATCGCGTATCTCAAGCGTCAACA TTTGTTTCTCGTAATATTCATCGGACTTATGACCATTTGCTTTCGCGGGTCTATTCCATCGGGGATGTTCGTCATGATAC ] [+] EMBL BM646886 [ ccgATTGATGCGGGGTGGTCATTCAATGCAGTGGGCGATGGTGGATCCGGCACAACCAGGTTGCGGAGGTCAATTCGAAAACTGTTTTCTTCGAAGAGTAAAAAGAAAAAGGTTAATACAATGTTCTCGGCATTCGACAATGCCGGAGCCAAAGAAGCCATCAGCCACGAGATCAACCTGGATATCAACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCATCCAGGAGATCAACCAGGAGATCAACCTGGAGATCATGTTCATCAAAGCAGGCTTCCTCATCATGAGTATTGTGAGTTCGTTCATTACAATTATGTACTGGATCGCGTATCTCAAGCGTCAACA TTTGTTTCTCGTAATATTCATCGGACTTATGACCA TTGCTTTCGCGGGTCTA TCCATC GGGATGTTCGTCATGATACAGCAGCAGAAATTCATCTGGGCGTGCGCAATGCTATTCGGATTCCTCTTGAACGGATATGTGCTGACGGTGGCGCTGCAACTACTTTCATATATTGAATCTACCCGGCGACAACACAGTTACGGTGCCAAGATGTGTATGCTTCCAGTGAAGTAATTAGTTACAGATTTGCAACGCTATTCTTGAATATATGAAACATGTTCTCGCCATTGGACTTTGAT] consensusID : consensus_6590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGCTCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAGAATATCCGAACACACGCAGCGTTCGTCGGTGTGATATTGATTCTATATGCGATATTCTCTATCCTTGCTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATTGGACAAAATAGATTATGAAGTGAAAGCTGATGCATCCAGTCCTAAGAGCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGGCATGCCGTTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGACGAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATTGGACTTTGACAGAATCAGAGAAGCCATCAGCCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCAACCAGAAGTCCACTCAATATATCAACCAGGAGACCATTGAGAAGACCATTCAGGAGATCAGCCAGGAGATCAGCCAGGAGATTTACACGGAGATCATGTTCATCAAGGTAGACTTCCTCATCATGAGCATTGTGAGTTCGTTCACTACAATCATCTACTGGATCGCGTATCTCAAGCGTCAACAGTTGTTTCTCGTAATATTTATCGGACTTATGACCTTTGCTTTTGTGGCTCTATCCAT] [+] EMBL BM629373 [CCGCTCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAGAATATCCGAACACACGCAGCGTTCGTCGGTGTGATATTGATTCTATATGCGATATTCTCTATCCTTGCTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATTGGACAAAATAGATTATGAAGTGAAAGCTGATGCATCCAGTCCTAAGAGCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGGCATGCCGTTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGACGAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATTGGACTTTGACAGAATCAGAGAAGCCATCAGCCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCAACCAGAAGTCCACTCAATATATCAACCAGGAGACCATTGAGAAGACCATTCAGGAGATCAGCCAGGAGATCAGCCAGGAGATTTACACGGAGATCATGTTCATCAAGGTAGACTTCCTCATCATGAGCATTGTGAGTTCGTTCACTACAATCATCTACTGGATCGCGTATCTCAAGCGTCAACAGTTGTTTCTCGTAATATTTATCGGACTTATGACCTTTGCTTTTGTGGCTCTATCCAT] consensusID : consensus_6590#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CAGAATNGCCCGAGGTTATTATGAAGTGAAAGCTGATGCATCCAGTCTAAGATGCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGTGCATGCCGTTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGACGAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATNTGGACTTTGACNAGAATCAGAGAAGCCATCAGCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCAACCAGAAGTCCACTCAATATATCAACCAGGAGANCATTGAGAAGACATATCAGGAGATCAGCCAGGAGATCAGCCAGCGAGCATTTACACGGAGATCATGTTCATCAAGGTACGACTATCCTCATCATGAGCCATTGTAGCAGTTCGTTCACTACAATCATCTACTTGGATCGCGTATCTCAAGCGTCAACAGTAGTACTCGTAATCATNTATCGGACTNNTATGACCTATTGCTCAAGTAGGATCTATCCATCGGGATGTTCGTCATGATTACAGCCAGCTAGCAAATTACATCTGNGGCGATGCGCAATTGCTATCGGAT] [+] EMBL AL697414 [CAGAATNGCCCGAGGTTATTATGAAGTGAAAGCTGATGCATCCAGTCTAAGATGCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGTGCATGCCGTTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGACGAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATNTGGACTTTGACNAGAATCAGAGAAGCCATCAGCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCAACCAGAAGTCCACTCAATATATCAACCAGGAGANCATTGAGAAGACATATCAGGAGATCAGCCAGGAGATCAGCCAGCGAGCATTTACACGGAGATCATGTTCATCAAGGTACGACTATCCTCATCATGAGCCATTGTAGCAGTTCGTTCACTACAATCATCTACTTGGATCGCGTATCTCAAGCGTCAACAGTAGTACTCGTAATCATNTATCGGACTNNTATGACCTATTGCTCAAGTAGGATCTATCCATCGGGATGTTCGTCATGATTACAGCCAGCTAGCAAATTACATCTGNGGCGATGCGCAATTGCTATCGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6590#1 ---------------------------------CCGCTCTGACGCACAAGATGGGATGGC 27 consensus_6590#2 ------------------------------------------------------------ consensus_6590#0 CCGGCGCCCAATCGTGTCAGTACTATCCGGCCATCGCTCTGACGCACAAGATGGGATGGC 60 consensus_6590#1 CGGCGTTTTTGAACTTTAGAAAGAATATCCGAACACACGCAGCGTTCGTCGGTGTGATAT 87 consensus_6590#2 ------------------------------------------------------------ consensus_6590#0 CGGCGTTTTTGAACTTTAGAAAAAATATCCGAACACACGCAGCGTTCGTCGGTGTTATAT 120 consensus_6590#1 TGATTCTATATGCGATATTCTCTATCCTTGCTGGAGTGGCTTGGTGGTTGGAGGTAAAAG 147 consensus_6590#2 ------------------------------------------------------------ consensus_6590#0 TGATTCTATATGCGATATTCTCTATCCTTACTGGAGTGGCTTGGTGGTTGGAGGTAAAAG 180 consensus_6590#1 TGCAGACCGGATTGGACAAAATAGATTATGAAGTGAAAGCTGATGCATCCAGTCCTAAGA 207 consensus_6590#2 -------CAGAATNGCCCGAGGTTATTATGAAGTGAAAGCTGATGCATCCAGTCTAAGAT 53 consensus_6590#0 TGCAGACCGGATCGGACAAAATAGATTATGAAGTGAAAGCTGAAGCATTCAGTCCTAAGA 240 * ** * * * ******************* **** ***** * consensus_6590#1 GCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAG-GCATGCCG 266 consensus_6590#2 GCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGTGCATGCCG 113 consensus_6590#0 GCAAGAGGTCAATTGATGCGGGGTGGTCATTCAATG--CAGTGGGCGATGGTGGAT-CCG 297 ******************** *************** ** * * * ** *** consensus_6590#1 TTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGAC 326 consensus_6590#2 TTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGAC 173 consensus_6590#0 GCACAACCAGGTTGCGGAGGTCAATTCGAAAAC----TGTTTTCT---TCGAAGAGTAA- 349 * * * * ** * * ** **** ** * * *** * * consensus_6590#1 GAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATT-GGACTTTGACA-GAA 384 consensus_6590#2 GAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATNTGGACTTTGACNAGAA 233 consensus_6590#0 ------AAAGAA---AAAGGTTAATACA--ATGTTCTCGGCATT-CGACAATGCCG-GAG 396 ****** * * * *** ********* ** *** ** * ** consensus_6590#1 TCAGAGAAGCCATCAGCCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCA 444 consensus_6590#2 TCAGAGAAGCCATCAGC-ACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCA 292 consensus_6590#0 CCAAAGAAGCCATCAGC---------------------CACGAGATCAACCTGGATATCA 435 ** ************* ** ******* ** ******** consensus_6590#1 ACCAGAAGTCCACTCAATATATCAACCAGGAGACCATTGAGAAGACCATTCAGGAGATCA 504 consensus_6590#2 ACCAGAAGTCCACTCAATATATCAACCAGGAGANCATTGAGAAGACATATCAGGAGATCA 352 consensus_6590#0 ACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCA 495 ******************* ********* ** ** * * ** **** ** ** consensus_6590#1 GCCAGGAGATCAGCCAG-GAG-ATTTACACGGAGATCATGTTCATCAAGGTA-GACT-TC 560 consensus_6590#2 GCCAGGAGATCAGCCAGCGAGCATTTACACGGAGATCATGTTCATCAAGGTACGACTATC 412 consensus_6590#0 TCCAGGAGATCAACCAG-GAG-ATCAACCTGGAGATCATGTTCATCAAAGCA-GGCT-TC 551 *********** **** *** ** ** ****************** * * * ** ** consensus_6590#1 CTCATCATGAGC-ATTGTG--AGTTCGTTCACTACAATCATCTACT-GGATCGCGTATCT 616 consensus_6590#2 CTCATCATGAGCCATTGTAGCAGTTCGTTCACTACAATCATCTACTTGGATCGCGTATCT 472 consensus_6590#0 CTCATCATGAGT-ATTGTG--AGTTCGTTCATTACAATTATGTACT-GGATCGCGTATCT 607 *********** ***** ********** ****** ** **** ************* consensus_6590#1 CAAGCGTCAACAGTTGTTTCTCGTAAT-ATTTATCGGACTTAT--GACCT-TTGCTTTTG 672 consensus_6590#2 CAAGCGTCAACAGTAGTA-CTCGTAATCATNTATCGGACTNNTATGACCTATTGCTCAAG 531 consensus_6590#0 CAAGCGTCAACATTTGTTTCTCGTAAT-ATTCATCGGACTTAT--GACCATTTGCTTTCG 664 ************ * ** ******** ** ******** * **** ***** * consensus_6590#1 T-GGCTCTATCCAT---------------------------------------------- 685 consensus_6590#2 TAGGATCTATCCATCGGG-ATGTTCGTCATGATTACAGCCAGCTAGCAAATTACATCTGN 590 consensus_6590#0 CGGGTCTATTCCATCGGGGATGTTCGTCATGATA-----CAGCAGCAGAAATTCATCTGG 719 ** ***** consensus_6590#1 ------------------------------------------------------------ consensus_6590#2 GGCGATGCGCAATTGCTATCGGAT------------------------------------ 614 consensus_6590#0 G--CGTGCGCAATGCTATTCGGATTCCTCTTGAACGGATATGTGCTGACGGTGGCGCTGC 777 consensus_6590#1 ------------------------------------------------------------ consensus_6590#2 ------------------------------------------------------------ consensus_6590#0 AACTACTTTCATATATTGAATCTACCCGGCGACAACACAGTTACGGTGCCAAGATGTGTA 837 consensus_6590#1 ------------------------------------------------------------ consensus_6590#2 ------------------------------------------------------------ consensus_6590#0 TGCTTCCAGTGAAGTAATTAGTTACAGATTTGCAACGCTATTCTTGAATATATGAAACAT 897 consensus_6590#1 ---------------------- consensus_6590#2 ---------------------- consensus_6590#0 GTTCTCGCCATTGGACTTTGAT 919 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||